RNA–Protein interactions for RNA: ENST00000264883.7

NUP54-201, Transcript of nucleoporin 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP54, Length 2,367 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-201ENST00000264883 KRTAP1-5Q9BYS1 174 aa7.89□□□□□ -1.15
NUP54-201ENST00000264883 KRTAP11-1Q8IUC1 163 aa7.89□□□□□ -1.15
NUP54-201ENST00000264883 SRRM2Q9UQ35 2752 aaKnown RBP7.88□□□□□ -1.15
NUP54-201ENST00000264883 A0A1B0GVX0 72 aa7.88□□□□□ -1.15
NUP54-201ENST00000264883 ACYP2P14621 99 aa7.88□□□□□ -1.15
NUP54-201ENST00000264883 KRTAP13-1Q8IUC0 172 aa7.88□□□□□ -1.15
NUP54-201ENST00000264883 SPATA8Q6RVD6 105 aa7.87□□□□□ -1.15
NUP54-201ENST00000264883 UBE2DNLQ8IWF7 75 aa7.87□□□□□ -1.15
NUP54-201ENST00000264883 LYSTQ99698 3801 aa7.87□□□□□ -1.15
NUP54-201ENST00000264883 ALMS1Q8TCU4 4167 aa7.86□□□□□ -1.15
NUP54-201ENST00000264883 A0A1B0GU69 56 aa7.86□□□□□ -1.15
NUP54-201ENST00000264883 CHTF8P0CG12 524 aa7.86□□□□□ -1.15
NUP54-201ENST00000264883 PLECQ15149 4684 aaKnown RBP7.85□□□□□ -1.15
NUP54-201ENST00000264883 NUPR2A6NF83 97 aa7.85□□□□□ -1.15
NUP54-201ENST00000264883 CDK2AP2O75956 126 aa7.85□□□□□ -1.15
NUP54-201ENST00000264883 STARD9Q9P2P6 4700 aa7.83□□□□□ -1.16
NUP54-201ENST00000264883 LINC00483Q53H64 154 aa7.83□□□□□ -1.16
NUP54-201ENST00000264883 ZNF706Q9Y5V0 76 aaPredicted RBP7.83□□□□□ -1.16
NUP54-201ENST00000264883 IGLV9-49A0A0B4J1Y8 123 aa7.82□□□□□ -1.16
NUP54-201ENST00000264883 MIR22HGQ0VDD5 57 aa7.82□□□□□ -1.16
NUP54-201ENST00000264883 CSAG1Q6PB30 78 aa7.81□□□□□ -1.16
NUP54-201ENST00000264883 NOTCH2NLQ7Z3S9 236 aa7.81□□□□□ -1.16
NUP54-201ENST00000264883 WWC2-AS2Q96NR7 200 aa7.8□□□□□ -1.16
NUP54-201ENST00000264883 Q5W150 140 aa7.79□□□□□ -1.16
NUP54-201ENST00000264883 RETNLBQ9BQ08 111 aa7.79□□□□□ -1.16
NUP54-201ENST00000264883 VPS13DQ5THJ4 4388 aa7.78□□□□□ -1.16
NUP54-201ENST00000264883 TGP01266 2768 aa7.78□□□□□ -1.16
NUP54-201ENST00000264883 UQCR11O14957 56 aa7.78□□□□□ -1.16
NUP54-201ENST00000264883 DMAC1Q96GE9 116 aa7.77□□□□□ -1.17
NUP54-201ENST00000264883 KRTAP13-3Q3SY46 172 aa7.77□□□□□ -1.17
NUP54-201ENST00000264883 SPACA4Q8TDM5 124 aa7.75□□□□□ -1.17
NUP54-201ENST00000264883 DNAH10Q8IVF4 4471 aa7.74□□□□□ -1.17
NUP54-201ENST00000264883 NBDYA0A0U1RRE5 68 aa7.74□□□□□ -1.17
NUP54-201ENST00000264883 Q6ZRN7 208 aaPredicted RBP7.71□□□□□ -1.18
NUP54-201ENST00000264883 PANO1I0J062 215 aa7.7□□□□□ -1.18
NUP54-201ENST00000264883 IGLV5-52A0A0A0MRZ9 124 aa7.67□□□□□ -1.18
NUP54-201ENST00000264883 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.67□□□□□ -1.18
NUP54-201ENST00000264883 ZNF861PO60384 105 aa7.66□□□□□ -1.18
NUP54-201ENST00000264883 SPINK6Q6UWN8 80 aa7.66□□□□□ -1.18
NUP54-201ENST00000264883 KMT2AQ03164 3969 aa7.64□□□□□ -1.19
NUP54-201ENST00000264883 PSORS1C2Q9UIG4 136 aa7.63□□□□□ -1.19
NUP54-201ENST00000264883 C1orf134Q5TEV5 83 aa7.62□□□□□ -1.19
NUP54-201ENST00000264883 A0A087WTM6 91 aa7.61□□□□□ -1.19
NUP54-201ENST00000264883 DNAH6Q9C0G6 4158 aa7.61□□□□□ -1.19
NUP54-201ENST00000264883 DNAH2Q9P225 4427 aa7.6□□□□□ -1.19
NUP54-201ENST00000264883 ANAPC11Q9NYG5 84 aa7.59□□□□□ -1.2
NUP54-201ENST00000264883 FAM229AH3BQW9 127 aa7.58□□□□□ -1.2
NUP54-201ENST00000264883 IGKV2-30P06310 120 aa7.57□□□□□ -1.2
NUP54-201ENST00000264883 LY6G6CO95867 125 aa7.57□□□□□ -1.2
NUP54-201ENST00000264883 IGLV7-43P04211 117 aa7.56□□□□□ -1.2
NUP54-201ENST00000264883 SSBP3-AS1Q7Z2R9 100 aa7.56□□□□□ -1.2
NUP54-201ENST00000264883 HECTD4Q9Y4D8 3996 aa7.53□□□□□ -1.2
NUP54-201ENST00000264883 ROMO1P60602 79 aa7.52□□□□□ -1.21
NUP54-201ENST00000264883 KRTAP25-1Q3LHN0 102 aa7.52□□□□□ -1.21
NUP54-201ENST00000264883 DNAH17Q9UFH2 4485 aa7.52□□□□□ -1.21
NUP54-201ENST00000264883 CIRBP-AS1Q8TBR5 109 aa7.49□□□□□ -1.21
NUP54-201ENST00000264883 FRAS1Q86XX4 4008 aa7.48□□□□□ -1.21
NUP54-201ENST00000264883 HYDINQ4G0P3 5121 aa7.47□□□□□ -1.21
NUP54-201ENST00000264883 A8MUU9 505 aa7.47□□□□□ -1.21
NUP54-201ENST00000264883 IGKV2D-30A0A075B6S6 120 aa7.45□□□□□ -1.22
NUP54-201ENST00000264883 DNAH11Q96DT5 4516 aa7.43□□□□□ -1.22
NUP54-201ENST00000264883 SPINK1P00995 79 aa7.43□□□□□ -1.22
NUP54-201ENST00000264883 LINC00304Q8N9R0 145 aa7.43□□□□□ -1.22
NUP54-201ENST00000264883 SACSQ9NZJ4 4579 aa7.42□□□□□ -1.22
NUP54-201ENST00000264883 FAT2Q9NYQ8 4349 aa7.41□□□□□ -1.22
NUP54-201ENST00000264883 DNAH8Q96JB1 4490 aa7.4□□□□□ -1.22
NUP54-201ENST00000264883 H0YAA0 97 aa7.4□□□□□ -1.23
NUP54-201ENST00000264883 Q6ZSA8 131 aa7.39□□□□□ -1.23
NUP54-201ENST00000264883 PKD1P98161 4303 aa7.38□□□□□ -1.23
NUP54-201ENST00000264883 DNAH5Q8TE73 4624 aa7.37□□□□□ -1.23
NUP54-201ENST00000264883 KRTAP10-2P60368 255 aa7.37□□□□□ -1.23
NUP54-201ENST00000264883 KRTAP16-1A8MUX0 517 aa7.37□□□□□ -1.23
NUP54-201ENST00000264883 P0C880 135 aa7.31□□□□□ -1.24
NUP54-201ENST00000264883 Q8N1X5 172 aa7.31□□□□□ -1.24
NUP54-201ENST00000264883 KRTAP13-2Q52LG2 175 aa7.31□□□□□ -1.24
NUP54-201ENST00000264883 A0A1B0GU33 70 aa7.28□□□□□ -1.24
NUP54-201ENST00000264883 CRIPTQ9P021 101 aa7.28□□□□□ -1.24
NUP54-201ENST00000264883 RYR2Q92736 4967 aa7.28□□□□□ -1.24
NUP54-201ENST00000264883 KRTAP10-1P60331 282 aa7.27□□□□□ -1.24
NUP54-201ENST00000264883 TYMSOSQ8TAI1 123 aa7.27□□□□□ -1.25
NUP54-201ENST00000264883 KMT2CQ8NEZ4 4911 aaKnown RBP7.26□□□□□ -1.25
NUP54-201ENST00000264883 H1FX-AS1Q4G0G2 97 aa7.24□□□□□ -1.25
NUP54-201ENST00000264883 PKHD1P08F94 4074 aa7.23□□□□□ -1.25
NUP54-201ENST00000264883 A0A1B0GVY2 172 aa7.2□□□□□ -1.26
NUP54-201ENST00000264883 K7ERS5 55 aa7.2□□□□□ -1.26
NUP54-201ENST00000264883 LRP1BQ9NZR2 4599 aa7.2□□□□□ -1.26
NUP54-201ENST00000264883 KRTAP1-4P0C5Y4 121 aa7.2□□□□□ -1.26
NUP54-201ENST00000264883 FLG2Q5D862 2391 aaPredicted RBP7.18□□□□□ -1.26
NUP54-201ENST00000264883 RPS29P62273 56 aaKnown RBP7.17□□□□□ -1.26
NUP54-201ENST00000264883 DYNC1H1Q14204 4646 aaKnown RBP7.16□□□□□ -1.26
NUP54-201ENST00000264883 SPINT4Q6UDR6 99 aa7.12□□□□□ -1.27
NUP54-201ENST00000264883 VPS13BQ7Z7G8 4022 aa7.1□□□□□ -1.27
NUP54-201ENST00000264883 RYR3Q15413 4870 aa7.09□□□□□ -1.27
NUP54-201ENST00000264883 APOBP04114 4563 aaKnown RBP7.07□□□□□ -1.28
NUP54-201ENST00000264883 COX6B2Q6YFQ2 88 aa7.06□□□□□ -1.28
NUP54-201ENST00000264883 KRTAP3-1Q9BYR8 98 aa7.05□□□□□ -1.28
NUP54-201ENST00000264883 NDUFAF8A1L188 74 aa7.03□□□□□ -1.28
NUP54-201ENST00000264883 TPRXLQ17RH7 258 aa7.02□□□□□ -1.29
NUP54-201ENST00000264883 C20orf166-AS1Q96NR2 134 aa7.02□□□□□ -1.29
NUP54-201ENST00000264883 FAT1Q14517 4588 aa6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms