RNA–Protein interactions for RNA: ENST00000263187.3

MSH4-201, Transcript of mutS homolog 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH4, Length 3,266 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4-201ENST00000263187 NUPR2A6NF83 97 aa5.45□□□□□ -1.54
MSH4-201ENST00000263187 Q8N9P0 234 aaPredicted RBP5.45□□□□□ -1.54
MSH4-201ENST00000263187 SPTSSBQ8NFR3 76 aa5.45□□□□□ -1.54
MSH4-201ENST00000263187 WWC2-AS2Q96NR7 200 aa5.45□□□□□ -1.54
MSH4-201ENST00000263187 DNAH11Q96DT5 4516 aa5.44□□□□□ -1.54
MSH4-201ENST00000263187 IGLV5-52A0A0A0MRZ9 124 aa5.43□□□□□ -1.54
MSH4-201ENST00000263187 A0A1B0GVX0 72 aa5.43□□□□□ -1.54
MSH4-201ENST00000263187 ALMS1Q8TCU4 4167 aa5.43□□□□□ -1.54
MSH4-201ENST00000263187 SPANXA2-OT1Q8N9U9 137 aa5.42□□□□□ -1.54
MSH4-201ENST00000263187 ZNF861PO60384 105 aa5.42□□□□□ -1.54
MSH4-201ENST00000263187 LY6G6CO95867 125 aa5.41□□□□□ -1.54
MSH4-201ENST00000263187 A6NED7 52 aa5.41□□□□□ -1.54
MSH4-201ENST00000263187 H3BPC8 53 aa5.4□□□□□ -1.54
MSH4-201ENST00000263187 Q5W150 140 aa5.4□□□□□ -1.54
MSH4-201ENST00000263187 MRPL34Q9BQ48 92 aaKnown RBP5.4□□□□□ -1.54
MSH4-201ENST00000263187 IGLV7-46A0A075B6I9 117 aa5.4□□□□□ -1.55
MSH4-201ENST00000263187 SACSQ9NZJ4 4579 aa5.4□□□□□ -1.55
MSH4-201ENST00000263187 H3BS24 57 aa5.39□□□□□ -1.55
MSH4-201ENST00000263187 PMAIP1Q13794 54 aa5.39□□□□□ -1.55
MSH4-201ENST00000263187 LINC00483Q53H64 154 aa5.39□□□□□ -1.55
MSH4-201ENST00000263187 ZNF706Q9Y5V0 76 aaPredicted RBP5.38□□□□□ -1.55
MSH4-201ENST00000263187 PRR26Q8N8Z3 221 aa5.38□□□□□ -1.55
MSH4-201ENST00000263187 HYDINQ4G0P3 5121 aa5.37□□□□□ -1.55
MSH4-201ENST00000263187 TP53AIP1Q9HCN2 124 aa5.37□□□□□ -1.55
MSH4-201ENST00000263187 HRES1P13985 223 aa5.37□□□□□ -1.55
MSH4-201ENST00000263187 LIMD2Q9BT23 127 aa5.37□□□□□ -1.55
MSH4-201ENST00000263187 LRP1BQ9NZR2 4599 aa5.37□□□□□ -1.55
MSH4-201ENST00000263187 C1orf134Q5TEV5 83 aa5.36□□□□□ -1.55
MSH4-201ENST00000263187 LCA10Q71F78 164 aa5.36□□□□□ -1.55
MSH4-201ENST00000263187 PLAC8Q9NZF1 115 aa5.36□□□□□ -1.55
MSH4-201ENST00000263187 IGLV7-43P04211 117 aa5.35□□□□□ -1.55
MSH4-201ENST00000263187 ASB16-AS1Q495Z4 193 aa5.35□□□□□ -1.55
MSH4-201ENST00000263187 DNAH5Q8TE73 4624 aa5.35□□□□□ -1.55
MSH4-201ENST00000263187 KMT2CQ8NEZ4 4911 aaKnown RBP5.35□□□□□ -1.55
MSH4-201ENST00000263187 KRTAP10-2P60368 255 aa5.35□□□□□ -1.55
MSH4-201ENST00000263187 Q6ZR54 194 aa5.35□□□□□ -1.55
MSH4-201ENST00000263187 SPINK7P58062 85 aa5.32□□□□□ -1.56
MSH4-201ENST00000263187 RYR2Q92736 4967 aa5.31□□□□□ -1.56
MSH4-201ENST00000263187 LOC101927531A0A1B0GV80 90 aa5.3□□□□□ -1.56
MSH4-201ENST00000263187 FAT2Q9NYQ8 4349 aa5.29□□□□□ -1.56
MSH4-201ENST00000263187 RYR3Q15413 4870 aa5.29□□□□□ -1.56
MSH4-201ENST00000263187 Q75L30 129 aa5.29□□□□□ -1.56
MSH4-201ENST00000263187 VPS13BQ7Z7G8 4022 aa5.28□□□□□ -1.56
MSH4-201ENST00000263187 LINC00313P59037 77 aa5.28□□□□□ -1.56
MSH4-201ENST00000263187 KRTAP13-2Q52LG2 175 aa5.27□□□□□ -1.57
MSH4-201ENST00000263187 IGKV2D-30A0A075B6S6 120 aa5.26□□□□□ -1.57
MSH4-201ENST00000263187 IGKV2-30P06310 120 aa5.26□□□□□ -1.57
MSH4-201ENST00000263187 LINC01558Q9Y6Z2 57 aa5.26□□□□□ -1.57
MSH4-201ENST00000263187 KRTAP10-1P60331 282 aa5.25□□□□□ -1.57
MSH4-201ENST00000263187 PKHD1P08F94 4074 aa5.24□□□□□ -1.57
MSH4-201ENST00000263187 KRTAP13-3Q3SY46 172 aa5.24□□□□□ -1.57
MSH4-201ENST00000263187 PKD1P98161 4303 aa5.23□□□□□ -1.57
MSH4-201ENST00000263187 SSBP3-AS1Q7Z2R9 100 aa5.22□□□□□ -1.57
MSH4-201ENST00000263187 CDC42SE1Q9NRR8 79 aa5.22□□□□□ -1.57
MSH4-201ENST00000263187 ACYP2P14621 99 aa5.22□□□□□ -1.57
MSH4-201ENST00000263187 ATP11AUNQ6ZP68 121 aa5.21□□□□□ -1.57
MSH4-201ENST00000263187 SPINK1P00995 79 aa5.21□□□□□ -1.58
MSH4-201ENST00000263187 PLA2G1BP04054 148 aaKnown RBP5.19□□□□□ -1.58
MSH4-201ENST00000263187 C8orf87E5RJ46 101 aa5.18□□□□□ -1.58
MSH4-201ENST00000263187 FAM229AH3BQW9 127 aa5.18□□□□□ -1.58
MSH4-201ENST00000263187 A6NN06 94 aa5.17□□□□□ -1.58
MSH4-201ENST00000263187 SMR3BP02814 79 aaPredicted RBP5.17□□□□□ -1.58
MSH4-201ENST00000263187 KTN1-AS1Q86SY8 53 aa5.17□□□□□ -1.58
MSH4-201ENST00000263187 FAT1Q14517 4588 aa5.16□□□□□ -1.58
MSH4-201ENST00000263187 Q8N1X5 172 aa5.16□□□□□ -1.58
MSH4-201ENST00000263187 A0A1B0GU69 56 aa5.16□□□□□ -1.58
MSH4-201ENST00000263187 C7orf65Q6ZTY9 151 aa5.16□□□□□ -1.58
MSH4-201ENST00000263187 DMAC1Q96GE9 116 aa5.15□□□□□ -1.58
MSH4-201ENST00000263187 KRTAP1-4P0C5Y4 121 aa5.15□□□□□ -1.58
MSH4-201ENST00000263187 TYMSOSQ8TAI1 123 aa5.15□□□□□ -1.58
MSH4-201ENST00000263187 PRAC1Q96KF2 57 aa5.14□□□□□ -1.59
MSH4-201ENST00000263187 KRTAP16-1A8MUX0 517 aa5.14□□□□□ -1.59
MSH4-201ENST00000263187 RBM12B-AS1Q9P1G2 102 aa5.14□□□□□ -1.59
MSH4-201ENST00000263187 ADM2Q7Z4H4 148 aa5.13□□□□□ -1.59
MSH4-201ENST00000263187 C9orf92A6NGG3 77 aa5.12□□□□□ -1.59
MSH4-201ENST00000263187 DYNC1H1Q14204 4646 aaKnown RBP5.1□□□□□ -1.59
MSH4-201ENST00000263187 Q6ZSA8 131 aa5.1□□□□□ -1.59
MSH4-201ENST00000263187 EPPK1P58107 5090 aaKnown RBP5.07□□□□□ -1.6
MSH4-201ENST00000263187 MIR22HGQ0VDD5 57 aa5.05□□□□□ -1.6
MSH4-201ENST00000263187 LINC00304Q8N9R0 145 aa5.05□□□□□ -1.6
MSH4-201ENST00000263187 APOBP04114 4563 aaKnown RBP5.03□□□□□ -1.6
MSH4-201ENST00000263187 UQCR11O14957 56 aa5.03□□□□□ -1.6
MSH4-201ENST00000263187 FLG2Q5D862 2391 aaPredicted RBP5.02□□□□□ -1.61
MSH4-201ENST00000263187 A0A1B0GVY2 172 aa5.01□□□□□ -1.61
MSH4-201ENST00000263187 MYCBP2O75592 4640 aa4.99□□□□□ -1.61
MSH4-201ENST00000263187 SPATA8Q6RVD6 105 aa4.99□□□□□ -1.61
MSH4-201ENST00000263187 DMBT1Q9UGM3 2413 aaPredicted RBP4.99□□□□□ -1.61
MSH4-201ENST00000263187 LRP1Q07954 4544 aaKnown RBP4.97□□□□□ -1.61
MSH4-201ENST00000263187 HSPG2P98160 4391 aa4.97□□□□□ -1.61
MSH4-201ENST00000263187 A0A0A0MQY5 61 aa4.96□□□□□ -1.61
MSH4-201ENST00000263187 PKHD1L1Q86WI1 4243 aa4.94□□□□□ -1.62
MSH4-201ENST00000263187 BIRC6Q9NR09 4857 aa4.93□□□□□ -1.62
MSH4-201ENST00000263187 KRTAP3-1Q9BYR8 98 aa4.92□□□□□ -1.62
MSH4-201ENST00000263187 RYR1P21817 5038 aa4.92□□□□□ -1.62
MSH4-201ENST00000263187 CSAG1Q6PB30 78 aa4.92□□□□□ -1.62
MSH4-201ENST00000263187 H0YAA0 97 aa4.89□□□□□ -1.63
MSH4-201ENST00000263187 CRIPTQ9P021 101 aa4.88□□□□□ -1.63
MSH4-201ENST00000263187 A8MUU9 505 aa4.86□□□□□ -1.63
MSH4-201ENST00000263187 A0A1B0GU33 70 aa4.85□□□□□ -1.63
MSH4-201ENST00000263187 C20orf166-AS1Q96NR2 134 aa4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms