RNA–Protein interactions for RNA: ENST00000254066.9

RARA-201, Transcript of retinoic acid receptor alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RARA, Length 2,414 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RARA-201ENST00000254066 SPATA8Q6RVD6 105 aa12.25□□□□□ -0.45
RARA-201ENST00000254066 DNAH9Q9NYC9 4486 aa12.24□□□□□ -0.45
RARA-201ENST00000254066 LINC00483Q53H64 154 aa12.22□□□□□ -0.45
RARA-201ENST00000254066 TENM2Q9NT68 2774 aa12.22□□□□□ -0.45
RARA-201ENST00000254066 KRTAP13-3Q3SY46 172 aa12.22□□□□□ -0.45
RARA-201ENST00000254066 IGLV9-49A0A0B4J1Y8 123 aa12.2□□□□□ -0.46
RARA-201ENST00000254066 CHTF8P0CG12 524 aa12.2□□□□□ -0.46
RARA-201ENST00000254066 DMAC1Q96GE9 116 aa12.19□□□□□ -0.46
RARA-201ENST00000254066 C1orf134Q5TEV5 83 aa12.17□□□□□ -0.46
RARA-201ENST00000254066 COL7A1Q02388 2944 aa12.17□□□□□ -0.46
RARA-201ENST00000254066 A0A1B0GU69 56 aa12.17□□□□□ -0.46
RARA-201ENST00000254066 CSAG1Q6PB30 78 aa12.16□□□□□ -0.46
RARA-201ENST00000254066 Q5W150 140 aa12.13□□□□□ -0.47
RARA-201ENST00000254066 NOTCH2NLQ7Z3S9 236 aa12.12□□□□□ -0.47
RARA-201ENST00000254066 KRTAP1-5Q9BYS1 174 aa12.11□□□□□ -0.47
RARA-201ENST00000254066 UQCR11O14957 56 aa12.09□□□□□ -0.47
RARA-201ENST00000254066 ROMO1P60602 79 aa12.08□□□□□ -0.48
RARA-201ENST00000254066 MIR22HGQ0VDD5 57 aa12.08□□□□□ -0.48
RARA-201ENST00000254066 TENM3Q9P273 2699 aa12.05□□□□□ -0.48
RARA-201ENST00000254066 ALMS1Q8TCU4 4167 aa12.05□□□□□ -0.48
RARA-201ENST00000254066 HUWE1Q7Z6Z7 4374 aaKnown RBP12.04□□□□□ -0.48
RARA-201ENST00000254066 STAB2Q8WWQ8 2551 aa12□□□□□ -0.49
RARA-201ENST00000254066 SRRM2Q9UQ35 2752 aaKnown RBP11.97□□□□□ -0.49
RARA-201ENST00000254066 FAM229AH3BQW9 127 aa11.96□□□□□ -0.49
RARA-201ENST00000254066 KMT2CQ8NEZ4 4911 aaKnown RBP11.94□□□□□ -0.5
RARA-201ENST00000254066 PANO1I0J062 215 aa11.94□□□□□ -0.5
RARA-201ENST00000254066 SPACA4Q8TDM5 124 aa11.93□□□□□ -0.5
RARA-201ENST00000254066 DNAH7Q8WXX0 4024 aa11.91□□□□□ -0.5
RARA-201ENST00000254066 IGKV2-30P06310 120 aa11.91□□□□□ -0.5
RARA-201ENST00000254066 UBE2DNLQ8IWF7 75 aa11.9□□□□□ -0.5
RARA-201ENST00000254066 SPINK6Q6UWN8 80 aa11.88□□□□□ -0.51
RARA-201ENST00000254066 ZNF861PO60384 105 aa11.85□□□□□ -0.51
RARA-201ENST00000254066 IGLV5-52A0A0A0MRZ9 124 aa11.85□□□□□ -0.51
RARA-201ENST00000254066 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.84□□□□□ -0.51
RARA-201ENST00000254066 DYNC2H1Q8NCM8 4307 aaKnown RBP11.83□□□□□ -0.52
RARA-201ENST00000254066 PSORS1C2Q9UIG4 136 aa11.81□□□□□ -0.52
RARA-201ENST00000254066 APLNQ9ULZ1 77 aa11.81□□□□□ -0.52
RARA-201ENST00000254066 RYR3Q15413 4870 aa11.8□□□□□ -0.52
RARA-201ENST00000254066 NUPR2A6NF83 97 aa11.79□□□□□ -0.52
RARA-201ENST00000254066 IGLV7-43P04211 117 aa11.78□□□□□ -0.52
RARA-201ENST00000254066 ANAPC11Q9NYG5 84 aa11.78□□□□□ -0.52
RARA-201ENST00000254066 Q6ZRN7 208 aaPredicted RBP11.76□□□□□ -0.53
RARA-201ENST00000254066 DNAH10Q8IVF4 4471 aa11.76□□□□□ -0.53
RARA-201ENST00000254066 SSBP3-AS1Q7Z2R9 100 aa11.75□□□□□ -0.53
RARA-201ENST00000254066 STARD9Q9P2P6 4700 aa11.74□□□□□ -0.53
RARA-201ENST00000254066 KRTAP25-1Q3LHN0 102 aa11.74□□□□□ -0.53
RARA-201ENST00000254066 NBDYA0A0U1RRE5 68 aa11.73□□□□□ -0.53
RARA-201ENST00000254066 CSMD3Q7Z407 3707 aa11.73□□□□□ -0.53
RARA-201ENST00000254066 SACSQ9NZJ4 4579 aa11.72□□□□□ -0.53
RARA-201ENST00000254066 CIRBP-AS1Q8TBR5 109 aa11.7□□□□□ -0.54
RARA-201ENST00000254066 RYR2Q92736 4967 aa11.69□□□□□ -0.54
RARA-201ENST00000254066 LYSTQ99698 3801 aa11.68□□□□□ -0.54
RARA-201ENST00000254066 IGKV2D-30A0A075B6S6 120 aa11.68□□□□□ -0.54
RARA-201ENST00000254066 P0C880 135 aa11.68□□□□□ -0.54
RARA-201ENST00000254066 KRTAP16-1A8MUX0 517 aa11.62□□□□□ -0.55
RARA-201ENST00000254066 LY6G6CO95867 125 aa11.62□□□□□ -0.55
RARA-201ENST00000254066 PLECQ15149 4684 aaKnown RBP11.59□□□□□ -0.55
RARA-201ENST00000254066 A0A087WTM6 91 aa11.57□□□□□ -0.56
RARA-201ENST00000254066 A8MUU9 505 aa11.57□□□□□ -0.56
RARA-201ENST00000254066 HYDINQ4G0P3 5121 aa11.49□□□□□ -0.57
RARA-201ENST00000254066 Q6ZSA8 131 aa11.45□□□□□ -0.58
RARA-201ENST00000254066 H0YAA0 97 aa11.44□□□□□ -0.58
RARA-201ENST00000254066 LINC00304Q8N9R0 145 aa11.44□□□□□ -0.58
RARA-201ENST00000254066 DNAH8Q96JB1 4490 aa11.43□□□□□ -0.58
RARA-201ENST00000254066 BIRC6Q9NR09 4857 aa11.4□□□□□ -0.59
RARA-201ENST00000254066 SPINK1P00995 79 aa11.39□□□□□ -0.59
RARA-201ENST00000254066 EPPK1P58107 5090 aaKnown RBP11.39□□□□□ -0.59
RARA-201ENST00000254066 VPS13DQ5THJ4 4388 aa11.36□□□□□ -0.59
RARA-201ENST00000254066 C20orf166-AS1Q96NR2 134 aa11.36□□□□□ -0.59
RARA-201ENST00000254066 DNAH6Q9C0G6 4158 aa11.35□□□□□ -0.59
RARA-201ENST00000254066 KMT2AQ03164 3969 aa11.35□□□□□ -0.59
RARA-201ENST00000254066 KRTAP13-2Q52LG2 175 aa11.34□□□□□ -0.59
RARA-201ENST00000254066 A0A1B0GU33 70 aa11.33□□□□□ -0.6
RARA-201ENST00000254066 Q8N1X5 172 aa11.3□□□□□ -0.6
RARA-201ENST00000254066 H1FX-AS1Q4G0G2 97 aa11.27□□□□□ -0.6
RARA-201ENST00000254066 NDUFAF8A1L188 74 aa11.27□□□□□ -0.61
RARA-201ENST00000254066 FRAS1Q86XX4 4008 aa11.26□□□□□ -0.61
RARA-201ENST00000254066 K7ERS5 55 aa11.23□□□□□ -0.61
RARA-201ENST00000254066 TYMSOSQ8TAI1 123 aa11.23□□□□□ -0.61
RARA-201ENST00000254066 A0A1B0GVY2 172 aa11.18□□□□□ -0.62
RARA-201ENST00000254066 HECTD4Q9Y4D8 3996 aa11.18□□□□□ -0.62
RARA-201ENST00000254066 DNAH17Q9UFH2 4485 aa11.13□□□□□ -0.63
RARA-201ENST00000254066 SPINT4Q6UDR6 99 aa11.11□□□□□ -0.63
RARA-201ENST00000254066 LUZP6Q538Z0 58 aa11.1□□□□□ -0.63
RARA-201ENST00000254066 SEC61BP60468 96 aaKnown RBP11.1□□□□□ -0.63
RARA-201ENST00000254066 KRTAP1-4P0C5Y4 121 aa11.09□□□□□ -0.63
RARA-201ENST00000254066 FAT2Q9NYQ8 4349 aa11.09□□□□□ -0.63
RARA-201ENST00000254066 DNAH2Q9P225 4427 aa11.09□□□□□ -0.63
RARA-201ENST00000254066 KRTAP15-1Q3LI76 137 aa11.04□□□□□ -0.64
RARA-201ENST00000254066 KRTAP3-1Q9BYR8 98 aa11.03□□□□□ -0.64
RARA-201ENST00000254066 RPS29P62273 56 aaKnown RBP11.02□□□□□ -0.65
RARA-201ENST00000254066 HERC2O95714 4834 aa11□□□□□ -0.65
RARA-201ENST00000254066 DNAH11Q96DT5 4516 aa10.99□□□□□ -0.65
RARA-201ENST00000254066 COX6B2Q6YFQ2 88 aa10.98□□□□□ -0.65
RARA-201ENST00000254066 PKD1P98161 4303 aa10.98□□□□□ -0.65
RARA-201ENST00000254066 DYNC1H1Q14204 4646 aaKnown RBP10.97□□□□□ -0.65
RARA-201ENST00000254066 CRIPTQ9P021 101 aa10.95□□□□□ -0.66
RARA-201ENST00000254066 PKHD1P08F94 4074 aa10.94□□□□□ -0.66
RARA-201ENST00000254066 KIAA1109Q2LD37 5005 aa10.91□□□□□ -0.66
RARA-201ENST00000254066 RPL37P61927 97 aaKnown RBP10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms