RNA–Protein interactions for RNA: ENST00000233146.6

MSH2-201, Transcript of mutS homolog 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH2, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-201ENST00000233146 CDK2AP2O75956 126 aa7.68□□□□□ -1.18
MSH2-201ENST00000233146 IGLV7-43P04211 117 aa7.68□□□□□ -1.18
MSH2-201ENST00000233146 KRTAP1-3Q8IUG1 177 aa7.68□□□□□ -1.18
MSH2-201ENST00000233146 DNAH1Q9P2D7 4330 aa7.66□□□□□ -1.18
MSH2-201ENST00000233146 A8MUU9 505 aa7.66□□□□□ -1.18
MSH2-201ENST00000233146 KRTAP10-3P60369 221 aa7.65□□□□□ -1.18
MSH2-201ENST00000233146 LINC00304Q8N9R0 145 aa7.62□□□□□ -1.19
MSH2-201ENST00000233146 CHTF8P0CG12 524 aa7.61□□□□□ -1.19
MSH2-201ENST00000233146 IGLV9-49A0A0B4J1Y8 123 aa7.6□□□□□ -1.19
MSH2-201ENST00000233146 LINC00483Q53H64 154 aa7.59□□□□□ -1.19
MSH2-201ENST00000233146 KRTAP13-1Q8IUC0 172 aa7.56□□□□□ -1.2
MSH2-201ENST00000233146 KRTAP1-1Q07627 177 aa7.55□□□□□ -1.2
MSH2-201ENST00000233146 IGKV2-30P06310 120 aa7.54□□□□□ -1.2
MSH2-201ENST00000233146 H0YAA0 97 aa7.52□□□□□ -1.21
MSH2-201ENST00000233146 FAM229AH3BQW9 127 aa7.5□□□□□ -1.21
MSH2-201ENST00000233146 LY6G6CO95867 125 aa7.49□□□□□ -1.21
MSH2-201ENST00000233146 Q6ZSA8 131 aa7.48□□□□□ -1.21
MSH2-201ENST00000233146 WWC2-AS2Q96NR7 200 aa7.46□□□□□ -1.22
MSH2-201ENST00000233146 SPINK6Q6UWN8 80 aa7.45□□□□□ -1.22
MSH2-201ENST00000233146 TGP01266 2768 aa7.45□□□□□ -1.22
MSH2-201ENST00000233146 COL7A1Q02388 2944 aa7.44□□□□□ -1.22
MSH2-201ENST00000233146 CRIPTQ9P021 101 aa7.44□□□□□ -1.22
MSH2-201ENST00000233146 DNAH10Q8IVF4 4471 aa7.43□□□□□ -1.22
MSH2-201ENST00000233146 PANO1I0J062 215 aa7.43□□□□□ -1.22
MSH2-201ENST00000233146 TENM3Q9P273 2699 aa7.43□□□□□ -1.22
MSH2-201ENST00000233146 FLG2Q5D862 2391 aaPredicted RBP7.41□□□□□ -1.22
MSH2-201ENST00000233146 IGKV2D-30A0A075B6S6 120 aa7.41□□□□□ -1.22
MSH2-201ENST00000233146 LYSTQ99698 3801 aa7.41□□□□□ -1.22
MSH2-201ENST00000233146 KRTAP16-1A8MUX0 517 aa7.4□□□□□ -1.22
MSH2-201ENST00000233146 STAB2Q8WWQ8 2551 aa7.39□□□□□ -1.23
MSH2-201ENST00000233146 C20orf166-AS1Q96NR2 134 aa7.38□□□□□ -1.23
MSH2-201ENST00000233146 NDUFAF8A1L188 74 aa7.37□□□□□ -1.23
MSH2-201ENST00000233146 A0A087WTM6 91 aa7.37□□□□□ -1.23
MSH2-201ENST00000233146 SSBP3-AS1Q7Z2R9 100 aa7.37□□□□□ -1.23
MSH2-201ENST00000233146 SPINK1P00995 79 aa7.36□□□□□ -1.23
MSH2-201ENST00000233146 KRTAP24-1Q3LI83 254 aa7.36□□□□□ -1.23
MSH2-201ENST00000233146 ANK2Q01484 3957 aa7.36□□□□□ -1.23
MSH2-201ENST00000233146 PSORS1C2Q9UIG4 136 aa7.35□□□□□ -1.23
MSH2-201ENST00000233146 NUPR2A6NF83 97 aa7.35□□□□□ -1.23
MSH2-201ENST00000233146 ANAPC11Q9NYG5 84 aa7.34□□□□□ -1.23
MSH2-201ENST00000233146 C14orf177Q52M58 125 aa7.34□□□□□ -1.23
MSH2-201ENST00000233146 SPINT4Q6UDR6 99 aa7.33□□□□□ -1.24
MSH2-201ENST00000233146 A0A1B0GU33 70 aa7.33□□□□□ -1.24
MSH2-201ENST00000233146 MEGF8Q7Z7M0 2845 aa7.32□□□□□ -1.24
MSH2-201ENST00000233146 KRTAP15-1Q3LI76 137 aa7.31□□□□□ -1.24
MSH2-201ENST00000233146 KRTAP1-5Q9BYS1 174 aa7.31□□□□□ -1.24
MSH2-201ENST00000233146 TYMSOSQ8TAI1 123 aa7.29□□□□□ -1.24
MSH2-201ENST00000233146 H1FX-AS1Q4G0G2 97 aa7.28□□□□□ -1.24
MSH2-201ENST00000233146 FRAS1Q86XX4 4008 aa7.28□□□□□ -1.24
MSH2-201ENST00000233146 K7ERS5 55 aa7.26□□□□□ -1.25
MSH2-201ENST00000233146 DNAH9Q9NYC9 4486 aa7.26□□□□□ -1.25
MSH2-201ENST00000233146 DNAH8Q96JB1 4490 aa7.25□□□□□ -1.25
MSH2-201ENST00000233146 KRTAP10-11P60412 298 aa7.24□□□□□ -1.25
MSH2-201ENST00000233146 TPRXLQ17RH7 258 aa7.22□□□□□ -1.25
MSH2-201ENST00000233146 Q8N1X5 172 aa7.22□□□□□ -1.25
MSH2-201ENST00000233146 CIRBP-AS1Q8TBR5 109 aa7.22□□□□□ -1.25
MSH2-201ENST00000233146 DNHD1Q96M86 4753 aa7.21□□□□□ -1.25
MSH2-201ENST00000233146 SPACA4Q8TDM5 124 aa7.19□□□□□ -1.26
MSH2-201ENST00000233146 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.19□□□□□ -1.26
MSH2-201ENST00000233146 DNAH17Q9UFH2 4485 aa7.1□□□□□ -1.27
MSH2-201ENST00000233146 COX6B2Q6YFQ2 88 aa7.09□□□□□ -1.27
MSH2-201ENST00000233146 C10orf95Q9H7T3 257 aa7.06□□□□□ -1.28
MSH2-201ENST00000233146 CMYA5Q8N3K9 4069 aa7.04□□□□□ -1.28
MSH2-201ENST00000233146 DNAH3Q8TD57 4116 aa7.04□□□□□ -1.28
MSH2-201ENST00000233146 NBDYA0A0U1RRE5 68 aa7.03□□□□□ -1.28
MSH2-201ENST00000233146 RPL37P61927 97 aaKnown RBP7.03□□□□□ -1.28
MSH2-201ENST00000233146 LUZP6Q538Z0 58 aa7.02□□□□□ -1.29
MSH2-201ENST00000233146 UBE2DNLQ8IWF7 75 aa7.01□□□□□ -1.29
MSH2-201ENST00000233146 KRTAP3-1Q9BYR8 98 aa7.01□□□□□ -1.29
MSH2-201ENST00000233146 HUWE1Q7Z6Z7 4374 aaKnown RBP7.01□□□□□ -1.29
MSH2-201ENST00000233146 FBN3Q75N90 2809 aa7□□□□□ -1.29
MSH2-201ENST00000233146 Q6ZRN7 208 aaPredicted RBP6.99□□□□□ -1.29
MSH2-201ENST00000233146 VPS13DQ5THJ4 4388 aa6.97□□□□□ -1.29
MSH2-201ENST00000233146 HECTD4Q9Y4D8 3996 aa6.96□□□□□ -1.3
MSH2-201ENST00000233146 DNAH7Q8WXX0 4024 aa6.95□□□□□ -1.3
MSH2-201ENST00000233146 KRTAP13-2Q52LG2 175 aa6.93□□□□□ -1.3
MSH2-201ENST00000233146 APLNQ9ULZ1 77 aa6.93□□□□□ -1.3
MSH2-201ENST00000233146 PRKDCP78527 4128 aaKnown RBP6.91□□□□□ -1.3
MSH2-201ENST00000233146 KRTAP13-4Q3LI77 160 aa6.88□□□□□ -1.31
MSH2-201ENST00000233146 DYNC2H1Q8NCM8 4307 aaKnown RBP6.86□□□□□ -1.31
MSH2-201ENST00000233146 KMT2AQ03164 3969 aa6.85□□□□□ -1.31
MSH2-201ENST00000233146 A0A0D9SG42 100 aa6.85□□□□□ -1.31
MSH2-201ENST00000233146 KRTAP10-6P60371 365 aaPredicted RBP6.84□□□□□ -1.31
MSH2-201ENST00000233146 DMBT1Q9UGM3 2413 aaPredicted RBP6.79□□□□□ -1.32
MSH2-201ENST00000233146 PLECQ15149 4684 aaKnown RBP6.78□□□□□ -1.32
MSH2-201ENST00000233146 S4R3F8 94 aa6.78□□□□□ -1.32
MSH2-201ENST00000233146 KRTAP3-2Q9BYR7 98 aa6.76□□□□□ -1.33
MSH2-201ENST00000233146 XP32Q5T750 250 aa6.75□□□□□ -1.33
MSH2-201ENST00000233146 DNAH6Q9C0G6 4158 aa6.73□□□□□ -1.33
MSH2-201ENST00000233146 DNAH2Q9P225 4427 aa6.73□□□□□ -1.33
MSH2-201ENST00000233146 KRTAP12-2P59991 146 aa6.71□□□□□ -1.33
MSH2-201ENST00000233146 KRTAP1-4P0C5Y4 121 aa6.7□□□□□ -1.34
MSH2-201ENST00000233146 DNAH11Q96DT5 4516 aa6.69□□□□□ -1.34
MSH2-201ENST00000233146 SEC61BP60468 96 aaKnown RBP6.66□□□□□ -1.34
MSH2-201ENST00000233146 KRTAP3-3Q9BYR6 98 aa6.66□□□□□ -1.34
MSH2-201ENST00000233146 STARD9Q9P2P6 4700 aa6.66□□□□□ -1.34
MSH2-201ENST00000233146 KRTAP12-1P59990 96 aa6.62□□□□□ -1.35
MSH2-201ENST00000233146 PLAC4Q8WY50 150 aa6.6□□□□□ -1.35
MSH2-201ENST00000233146 C9orf92A6NGG3 77 aa6.58□□□□□ -1.36
MSH2-201ENST00000233146 LRP1BQ9NZR2 4599 aa6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms