RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 LINC00575Q6W349 94 aa6.46□□□□□ -1.38
CLN3-257ENST00000637110 DLEU1O43261 78 aa6.45□□□□□ -1.38
CLN3-257ENST00000637110 SMIM6P0DI80 62 aa6.45□□□□□ -1.38
CLN3-257ENST00000637110 Q6ZQY7 126 aa6.45□□□□□ -1.38
CLN3-257ENST00000637110 RAB37Q96AX2 223 aa6.45□□□□□ -1.38
CLN3-257ENST00000637110 VAMP8Q9BV40 100 aa6.45□□□□□ -1.38
CLN3-257ENST00000637110 BVES-AS1Q5T3Y7 98 aa6.44□□□□□ -1.38
CLN3-257ENST00000637110 ASB16-AS1Q495Z4 193 aa6.43□□□□□ -1.38
CLN3-257ENST00000637110 C9orf92A6NGG3 77 aa6.42□□□□□ -1.38
CLN3-257ENST00000637110 KRTAP9-7A8MTY7 169 aa6.42□□□□□ -1.38
CLN3-257ENST00000637110 SNCGO76070 127 aa6.41□□□□□ -1.38
CLN3-257ENST00000637110 XP32Q5T750 250 aa6.41□□□□□ -1.38
CLN3-257ENST00000637110 SNHG12Q9BXW3 62 aa6.41□□□□□ -1.38
CLN3-257ENST00000637110 HIGD1BQ9P298 99 aa6.41□□□□□ -1.38
CLN3-257ENST00000637110 TCL1BO95988 128 aa6.4□□□□□ -1.38
CLN3-257ENST00000637110 CFC1BP0CG36 223 aa6.4□□□□□ -1.38
CLN3-257ENST00000637110 CFC1P0CG37 223 aa6.4□□□□□ -1.38
CLN3-257ENST00000637110 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.4□□□□□ -1.38
CLN3-257ENST00000637110 OCIAD2Q56VL3 154 aa6.38□□□□□ -1.39
CLN3-257ENST00000637110 C1orf195Q5TG92 126 aa6.38□□□□□ -1.39
CLN3-257ENST00000637110 Q5XG85 94 aa6.38□□□□□ -1.39
CLN3-257ENST00000637110 Q6JHZ5 121 aa6.38□□□□□ -1.39
CLN3-257ENST00000637110 A0A0B4J2C4 111 aa6.37□□□□□ -1.39
CLN3-257ENST00000637110 TMEM238LA0A1B0GVL6 79 aa6.37□□□□□ -1.39
CLN3-257ENST00000637110 A6NJY4 79 aa6.37□□□□□ -1.39
CLN3-257ENST00000637110 C2orf91Q6ZV80 131 aa6.37□□□□□ -1.39
CLN3-257ENST00000637110 CEND1Q8N111 149 aa6.37□□□□□ -1.39
CLN3-257ENST00000637110 H0YGX0 51 aa6.36□□□□□ -1.39
CLN3-257ENST00000637110 PYY3Q5JQD4 70 aa6.36□□□□□ -1.39
CLN3-257ENST00000637110 PPDPFLQ8WWR9 84 aa6.36□□□□□ -1.39
CLN3-257ENST00000637110 CLEC2BQ92478 149 aa6.36□□□□□ -1.39
CLN3-257ENST00000637110 IGFL1Q6UW32 110 aa6.35□□□□□ -1.39
CLN3-257ENST00000637110 PRO1854Q9UHT4 67 aa6.35□□□□□ -1.39
CLN3-257ENST00000637110 IGLV8-61A0A075B6I0 122 aa6.33□□□□□ -1.4
CLN3-257ENST00000637110 TRBV7-7A0A0K0K1E9 115 aa6.33□□□□□ -1.4
CLN3-257ENST00000637110 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.33□□□□□ -1.4
CLN3-257ENST00000637110 H3BUT2 72 aa6.33□□□□□ -1.4
CLN3-257ENST00000637110 PCOTHQ58A44 107 aa6.33□□□□□ -1.4
CLN3-257ENST00000637110 KRTAP4-1Q9BYQ7 146 aa6.33□□□□□ -1.4
CLN3-257ENST00000637110 FXYD2P54710 66 aa6.32□□□□□ -1.4
CLN3-257ENST00000637110 FABP2P12104 132 aa6.31□□□□□ -1.4
CLN3-257ENST00000637110 PSMB2P49721 201 aa6.31□□□□□ -1.4
CLN3-257ENST00000637110 FAM218AQ96MZ4 157 aa6.31□□□□□ -1.4
CLN3-257ENST00000637110 PCP4L1A6NKN8 68 aa6.3□□□□□ -1.4
CLN3-257ENST00000637110 TSTD3H0UI37 97 aa6.3□□□□□ -1.4
CLN3-257ENST00000637110 GHRHP01286 108 aa6.3□□□□□ -1.4
CLN3-257ENST00000637110 NDUFV3P56181 108 aaKnown RBP6.3□□□□□ -1.4
CLN3-257ENST00000637110 HSD52Q0P140 79 aa6.3□□□□□ -1.4
CLN3-257ENST00000637110 A0A1B0GX51 115 aa6.28□□□□□ -1.4
CLN3-257ENST00000637110 LST1O00453 97 aa6.28□□□□□ -1.4
CLN3-257ENST00000637110 LCE2CQ5TA81 110 aa6.28□□□□□ -1.4
CLN3-257ENST00000637110 TRIAP1O43715 76 aa6.27□□□□□ -1.41
CLN3-257ENST00000637110 DNAL4O96015 105 aa6.27□□□□□ -1.41
CLN3-257ENST00000637110 MT1HP80294 61 aa6.27□□□□□ -1.41
CLN3-257ENST00000637110 UQCR10Q9UDW1 63 aa6.27□□□□□ -1.41
CLN3-257ENST00000637110 H3BMG7 143 aa6.26□□□□□ -1.41
CLN3-257ENST00000637110 K7ERJ3 54 aa6.26□□□□□ -1.41
CLN3-257ENST00000637110 COX6CP09669 75 aa6.26□□□□□ -1.41
CLN3-257ENST00000637110 LORP23490 312 aaPredicted RBP6.25□□□□□ -1.41
CLN3-257ENST00000637110 RPL37P61927 97 aaKnown RBP6.25□□□□□ -1.41
CLN3-257ENST00000637110 SS18L2Q9UHA2 77 aa6.25□□□□□ -1.41
CLN3-257ENST00000637110 A0A1B0GV72 72 aa6.24□□□□□ -1.41
CLN3-257ENST00000637110 TEN1Q86WV5 123 aa6.24□□□□□ -1.41
CLN3-257ENST00000637110 KRTAP10-6P60371 365 aaPredicted RBP6.23□□□□□ -1.41
CLN3-257ENST00000637110 ORMDL1Q9P0S3 153 aa6.23□□□□□ -1.41
CLN3-257ENST00000637110 A0A087WSZ3 146 aa6.22□□□□□ -1.41
CLN3-257ENST00000637110 Q6Q795 121 aa6.22□□□□□ -1.41
CLN3-257ENST00000637110 OBSCN-AS1Q96MR7 158 aa6.22□□□□□ -1.41
CLN3-257ENST00000637110 H3BQ85 93 aa6.21□□□□□ -1.42
CLN3-257ENST00000637110 SCGB1C2P0DMR2 95 aa6.21□□□□□ -1.42
CLN3-257ENST00000637110 ANKRD29Q8N6D5 301 aa6.21□□□□□ -1.42
CLN3-257ENST00000637110 TMEM256-PLSCR3K7ERE1 68 aa6.19□□□□□ -1.42
CLN3-257ENST00000637110 M0R2T5 61 aa6.19□□□□□ -1.42
CLN3-257ENST00000637110 KRTAP19-2Q3LHN2 52 aa6.19□□□□□ -1.42
CLN3-257ENST00000637110 ATP11AUNQ6ZP68 121 aa6.19□□□□□ -1.42
CLN3-257ENST00000637110 Q96NJ1 140 aa6.19□□□□□ -1.42
CLN3-257ENST00000637110 A0A1W2PNM2 257 aa6.16□□□□□ -1.42
CLN3-257ENST00000637110 COX6B2Q6YFQ2 88 aa6.16□□□□□ -1.42
CLN3-257ENST00000637110 SIGMAR1Q99720 223 aa6.16□□□□□ -1.42
CLN3-257ENST00000637110 Q75L30 129 aa6.14□□□□□ -1.43
CLN3-257ENST00000637110 VPS25Q9BRG1 176 aa6.14□□□□□ -1.43
CLN3-257ENST00000637110 TRBV7-4A0A0J9YYF1 115 aa6.13□□□□□ -1.43
CLN3-257ENST00000637110 M0R143 59 aa6.13□□□□□ -1.43
CLN3-257ENST00000637110 TRACP01848 142 aa6.13□□□□□ -1.43
CLN3-257ENST00000637110 CCKP06307 115 aa6.13□□□□□ -1.43
CLN3-257ENST00000637110 IGKV4-1P06312 121 aa6.13□□□□□ -1.43
CLN3-257ENST00000637110 UBE2V1Q13404 147 aa6.13□□□□□ -1.43
CLN3-257ENST00000637110 DSCR10P59022 87 aa6.12□□□□□ -1.43
CLN3-257ENST00000637110 RBM3P98179 157 aaKnown RBP6.1□□□□□ -1.43
CLN3-257ENST00000637110 DEFB116Q30KQ4 102 aa6.1□□□□□ -1.43
CLN3-257ENST00000637110 DSCR8Q96T75 97 aa6.1□□□□□ -1.43
CLN3-257ENST00000637110 BAALC-AS2P0C853 105 aa6.09□□□□□ -1.43
CLN3-257ENST00000637110 LINC00313P59037 77 aa6.09□□□□□ -1.43
CLN3-257ENST00000637110 NAA38Q9BRA0 125 aaKnown RBP6.08□□□□□ -1.44
CLN3-257ENST00000637110 ATXN8Q156A1 80 aa6.07□□□□□ -1.44
CLN3-257ENST00000637110 C20orf166-AS1Q96NR2 134 aa6.07□□□□□ -1.44
CLN3-257ENST00000637110 A8MUU9 505 aa6.06□□□□□ -1.44
CLN3-257ENST00000637110 C9JAW5 83 aa6.06□□□□□ -1.44
CLN3-257ENST00000637110 SSPOA2VEC9 5147 aa6.05□□□□□ -1.44
CLN3-257ENST00000637110 IGHV6-1A0A0B4J1U7 121 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms