RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, human

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PDLIM5-223	ENST00000627587		B5MCH6	92 aa		5.93	□□□□□ -1.46
PDLIM5-223	ENST00000627587		Q6ZQY7	126 aa		5.93	□□□□□ -1.46
PDLIM5-223	ENST00000627587		Q6ZRX8	168 aa		5.93	□□□□□ -1.46
PDLIM5-223	ENST00000627587	TMEM256-PLSCR3	K7ERE1	68 aa		5.92	□□□□□ -1.46
PDLIM5-223	ENST00000627587	UNQ6493/PRO21345	Q6UXR8	122 aa	Predicted RBP	5.92	□□□□□ -1.46
PDLIM5-223	ENST00000627587	PPDPFL	Q8WWR9	84 aa		5.92	□□□□□ -1.46
PDLIM5-223	ENST00000627587	KRTAP29-1	A8MX34	341 aa	Predicted RBP	5.92	□□□□□ -1.46
PDLIM5-223	ENST00000627587		J3QR89	54 aa		5.92	□□□□□ -1.46
PDLIM5-223	ENST00000627587	GHRH	P01286	108 aa		5.92	□□□□□ -1.46
PDLIM5-223	ENST00000627587	PLAC8	Q9NZF1	115 aa		5.92	□□□□□ -1.46
PDLIM5-223	ENST00000627587	DHRS4-AS1	Q9P1J3	65 aa		5.92	□□□□□ -1.46
PDLIM5-223	ENST00000627587	TEX49	A0A1B0GTD5	131 aa		5.91	□□□□□ -1.46
PDLIM5-223	ENST00000627587		H3BQ85	93 aa		5.91	□□□□□ -1.46
PDLIM5-223	ENST00000627587	SIGMAR1	Q99720	223 aa		5.91	□□□□□ -1.46
PDLIM5-223	ENST00000627587	FLG2	Q5D862	2391 aa	Predicted RBP	5.9	□□□□□ -1.46
PDLIM5-223	ENST00000627587		Q9BRP9	147 aa		5.9	□□□□□ -1.46
PDLIM5-223	ENST00000627587	SS18L2	Q9UHA2	77 aa		5.9	□□□□□ -1.46
PDLIM5-223	ENST00000627587	FAM19A1	Q7Z5A9	133 aa		5.9	□□□□□ -1.47
PDLIM5-223	ENST00000627587	KRTAP4-7	Q9BYR0	210 aa		5.89	□□□□□ -1.47
PDLIM5-223	ENST00000627587	FAM30A	Q9NZY2	134 aa		5.89	□□□□□ -1.47
PDLIM5-223	ENST00000627587	PRLH	P81277	87 aa		5.88	□□□□□ -1.47
PDLIM5-223	ENST00000627587	SMIM20	Q8N5G0	67 aa		5.88	□□□□□ -1.47
PDLIM5-223	ENST00000627587	JMJD7-PLA2G4B	H0Y9G9	81 aa		5.87	□□□□□ -1.47
PDLIM5-223	ENST00000627587	LCE1D	Q5T752	114 aa		5.87	□□□□□ -1.47
PDLIM5-223	ENST00000627587		Q6ZSA8	131 aa		5.87	□□□□□ -1.47
PDLIM5-223	ENST00000627587		H0Y9J4	135 aa		5.86	□□□□□ -1.47
PDLIM5-223	ENST00000627587	BCE1	O60756	84 aa		5.86	□□□□□ -1.47
PDLIM5-223	ENST00000627587	ERC2-IT1	O76042	136 aa		5.86	□□□□□ -1.47
PDLIM5-223	ENST00000627587	UBE2A	P49459	152 aa		5.86	□□□□□ -1.47
PDLIM5-223	ENST00000627587	HAMP	P81172	84 aa		5.86	□□□□□ -1.47
PDLIM5-223	ENST00000627587	SMCR5	Q8TEV8	140 aa		5.86	□□□□□ -1.47
PDLIM5-223	ENST00000627587	LAMTOR3	Q9UHA4	124 aa		5.86	□□□□□ -1.47
PDLIM5-223	ENST00000627587	OXT	P01178	125 aa		5.85	□□□□□ -1.47
PDLIM5-223	ENST00000627587	OBSCN-AS1	Q96MR7	158 aa		5.85	□□□□□ -1.47
PDLIM5-223	ENST00000627587	HIGD2A	Q9BW72	106 aa		5.85	□□□□□ -1.47
PDLIM5-223	ENST00000627587	LINC01547	P58512	204 aa	Predicted RBP	5.85	□□□□□ -1.47
PDLIM5-223	ENST00000627587	DEFB105A	Q8NG35	78 aa		5.85	□□□□□ -1.47
PDLIM5-223	ENST00000627587	CIRBP-AS1	Q8TBR5	109 aa		5.85	□□□□□ -1.47
PDLIM5-223	ENST00000627587	KRTAP13-1	Q8IUC0	172 aa		5.84	□□□□□ -1.47
PDLIM5-223	ENST00000627587	C14orf132	Q9NPU4	83 aa		5.84	□□□□□ -1.47
PDLIM5-223	ENST00000627587	SCX	Q7RTU7	201 aa		5.83	□□□□□ -1.48
PDLIM5-223	ENST00000627587	PSORS1C2	Q9UIG4	136 aa		5.83	□□□□□ -1.48
PDLIM5-223	ENST00000627587	IGLV5-48	A0A075B6I7	105 aa		5.83	□□□□□ -1.48
PDLIM5-223	ENST00000627587	NDUFV3	P56181	108 aa	Known RBP	5.83	□□□□□ -1.48
PDLIM5-223	ENST00000627587	RBM3	P98179	157 aa	Known RBP	5.83	□□□□□ -1.48
PDLIM5-223	ENST00000627587		Q8N377	158 aa		5.83	□□□□□ -1.48
PDLIM5-223	ENST00000627587	ST20-AS1	Q8NBB2	130 aa		5.83	□□□□□ -1.48
PDLIM5-223	ENST00000627587	C1orf137	Q5JT78	98 aa		5.82	□□□□□ -1.48
PDLIM5-223	ENST00000627587	HMCN2	Q8NDA2	5059 aa		5.82	□□□□□ -1.48
PDLIM5-223	ENST00000627587	FAT3	Q8TDW7	4589 aa		5.81	□□□□□ -1.48
PDLIM5-223	ENST00000627587	DSCR8	Q96T75	97 aa		5.81	□□□□□ -1.48
PDLIM5-223	ENST00000627587	FAM240A	A0A1B0GVK7	77 aa		5.8	□□□□□ -1.48
PDLIM5-223	ENST00000627587	GAGE2A	Q6NT46	116 aa		5.8	□□□□□ -1.48
PDLIM5-223	ENST00000627587	ACYP1	P07311	99 aa		5.79	□□□□□ -1.48
PDLIM5-223	ENST00000627587	LOC110117498	A0A087WWA1	95 aa		5.78	□□□□□ -1.48
PDLIM5-223	ENST00000627587	ZNF861P	O60384	105 aa		5.78	□□□□□ -1.48
PDLIM5-223	ENST00000627587	CCK	P06307	115 aa		5.78	□□□□□ -1.48
PDLIM5-223	ENST00000627587	PDE6G	P18545	87 aa		5.78	□□□□□ -1.48
PDLIM5-223	ENST00000627587	SEC61G	P60059	68 aa		5.78	□□□□□ -1.48
PDLIM5-223	ENST00000627587	C3orf22	Q8N5N4	141 aa		5.78	□□□□□ -1.48
PDLIM5-223	ENST00000627587	LRP1	Q07954	4544 aa	Known RBP	5.77	□□□□□ -1.48
PDLIM5-223	ENST00000627587	TRBV7-4	A0A0J9YYF1	115 aa		5.77	□□□□□ -1.49
PDLIM5-223	ENST00000627587	KRTAP10-4	P60372	401 aa	Predicted RBP	5.77	□□□□□ -1.49
PDLIM5-223	ENST00000627587	SMIM29	Q86T20	159 aa		5.77	□□□□□ -1.49
PDLIM5-223	ENST00000627587	UBR4	Q5T4S7	5183 aa		5.77	□□□□□ -1.49
PDLIM5-223	ENST00000627587	IGLV7-43	P04211	117 aa		5.77	□□□□□ -1.49
PDLIM5-223	ENST00000627587		Q6ZQT0	140 aa		5.77	□□□□□ -1.49
PDLIM5-223	ENST00000627587	PKHD1L1	Q86WI1	4243 aa		5.76	□□□□□ -1.49
PDLIM5-223	ENST00000627587		F8WEM9	126 aa		5.76	□□□□□ -1.49
PDLIM5-223	ENST00000627587	CDIP1	Q9H305	208 aa		5.76	□□□□□ -1.49
PDLIM5-223	ENST00000627587	SPRR1B	P22528	89 aa		5.75	□□□□□ -1.49
PDLIM5-223	ENST00000627587	ZNF706	Q9Y5V0	76 aa	Predicted RBP	5.75	□□□□□ -1.49
PDLIM5-223	ENST00000627587	RPL37A	P61513	92 aa	Known RBP	5.75	□□□□□ -1.49
PDLIM5-223	ENST00000627587	SPRR4	Q96PI1	79 aa		5.74	□□□□□ -1.49
PDLIM5-223	ENST00000627587	KRTAP4-9	Q9BYQ8	210 aa		5.73	□□□□□ -1.49
PDLIM5-223	ENST00000627587	IGLV8-61	A0A075B6I0	122 aa		5.71	□□□□□ -1.5
PDLIM5-223	ENST00000627587	LINC00483	Q53H64	154 aa		5.71	□□□□□ -1.5
PDLIM5-223	ENST00000627587	ANAPC13	Q9BS18	74 aa		5.71	□□□□□ -1.5
PDLIM5-223	ENST00000627587	LINC00846	Q9NV44	126 aa		5.71	□□□□□ -1.5
PDLIM5-223	ENST00000627587		A0A0G2JQZ4	141 aa		5.69	□□□□□ -1.5
PDLIM5-223	ENST00000627587		Q6JHZ5	121 aa		5.69	□□□□□ -1.5
PDLIM5-223	ENST00000627587	IGFL1	Q6UW32	110 aa		5.68	□□□□□ -1.5
PDLIM5-223	ENST00000627587	LINC00643	Q86TS7	51 aa		5.68	□□□□□ -1.5
PDLIM5-223	ENST00000627587		Q8NBF4	154 aa		5.68	□□□□□ -1.5
PDLIM5-223	ENST00000627587	UBL5	Q9BZL1	73 aa		5.68	□□□□□ -1.5
PDLIM5-223	ENST00000627587		A0A1B0GW54	56 aa		5.68	□□□□□ -1.5
PDLIM5-223	ENST00000627587	IGLV9-49	A0A0B4J1Y8	123 aa		5.67	□□□□□ -1.5
PDLIM5-223	ENST00000627587		A0A1W2PNM2	257 aa		5.67	□□□□□ -1.5
PDLIM5-223	ENST00000627587	MT-ATP8	P03928	68 aa		5.67	□□□□□ -1.5
PDLIM5-223	ENST00000627587	C9orf153	Q5TBE3	101 aa		5.67	□□□□□ -1.5
PDLIM5-223	ENST00000627587	ANAPC11	Q9NYG5	84 aa		5.67	□□□□□ -1.5
PDLIM5-223	ENST00000627587	MT1HL1	P0DM35	61 aa		5.65	□□□□□ -1.5
PDLIM5-223	ENST00000627587	CRYGA	P11844	174 aa		5.65	□□□□□ -1.5
PDLIM5-223	ENST00000627587		Q6ZVQ6	151 aa		5.64	□□□□□ -1.51
PDLIM5-223	ENST00000627587		V9GYY9	64 aa		5.64	□□□□□ -1.51
PDLIM5-223	ENST00000627587	MOBP	Q13875	183 aa		5.64	□□□□□ -1.51
PDLIM5-223	ENST00000627587	KRTAP4-2	Q9BYR5	136 aa		5.64	□□□□□ -1.51
PDLIM5-223	ENST00000627587		J3KT08	172 aa		5.62	□□□□□ -1.51
PDLIM5-223	ENST00000627587	KRTAP1-4	P0C5Y4	121 aa		5.62	□□□□□ -1.51
PDLIM5-223	ENST00000627587	RPS28	P62857	69 aa	Known RBP	5.62	□□□□□ -1.51

Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms