RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 TENM3Q9P273 2699 aa6.6□□□□□ -1.35
VPS39-214ENST00000614932 A0A1B0GUV1 79 aa6.6□□□□□ -1.35
VPS39-214ENST00000614932 A0A1W2PNM2 257 aa6.6□□□□□ -1.35
VPS39-214ENST00000614932 H0Y9P7 68 aa6.6□□□□□ -1.35
VPS39-214ENST00000614932 KRTAP10-11P60412 298 aa6.6□□□□□ -1.35
VPS39-214ENST00000614932 CNBPP62633 177 aaKnown RBP6.6□□□□□ -1.35
VPS39-214ENST00000614932 COL6A5A8TX70 2615 aa6.6□□□□□ -1.35
VPS39-214ENST00000614932 KRTAP24-1Q3LI83 254 aa6.6□□□□□ -1.35
VPS39-214ENST00000614932 C9orf163Q8N9P6 203 aa6.6□□□□□ -1.35
VPS39-214ENST00000614932 UNQ6190/PRO20217Q6UXQ8 127 aa6.59□□□□□ -1.35
VPS39-214ENST00000614932 A0A0J9YWU9 116 aa6.58□□□□□ -1.36
VPS39-214ENST00000614932 DEFB116Q30KQ4 102 aa6.58□□□□□ -1.36
VPS39-214ENST00000614932 SPART-AS1P0CW21 52 aa6.58□□□□□ -1.36
VPS39-214ENST00000614932 IGLV7-46A0A075B6I9 117 aa6.57□□□□□ -1.36
VPS39-214ENST00000614932 IGKV2D-24A0A075B6R9 120 aa6.57□□□□□ -1.36
VPS39-214ENST00000614932 CYSRT1A8MQ03 144 aa6.57□□□□□ -1.36
VPS39-214ENST00000614932 WFDC13Q8IUB5 93 aa6.57□□□□□ -1.36
VPS39-214ENST00000614932 CHCHD10Q8WYQ3 142 aaPredicted RBP6.57□□□□□ -1.36
VPS39-214ENST00000614932 LINC00476Q8WZB0 136 aa6.57□□□□□ -1.36
VPS39-214ENST00000614932 Q8NBF4 154 aa6.57□□□□□ -1.36
VPS39-214ENST00000614932 A0A087X002 238 aa6.56□□□□□ -1.36
VPS39-214ENST00000614932 RETNLBQ9BQ08 111 aa6.56□□□□□ -1.36
VPS39-214ENST00000614932 REG3AQ06141 175 aa6.56□□□□□ -1.36
VPS39-214ENST00000614932 Q8N377 158 aa6.56□□□□□ -1.36
VPS39-214ENST00000614932 DEFB105AQ8NG35 78 aa6.56□□□□□ -1.36
VPS39-214ENST00000614932 XAGE1AQ9HD64 81 aa6.55□□□□□ -1.36
VPS39-214ENST00000614932 C1orf137Q5JT78 98 aa6.55□□□□□ -1.36
VPS39-214ENST00000614932 SPRR4Q96PI1 79 aa6.55□□□□□ -1.36
VPS39-214ENST00000614932 H0Y9J4 135 aa6.54□□□□□ -1.36
VPS39-214ENST00000614932 WFDC10BQ8IUB3 73 aa6.54□□□□□ -1.36
VPS39-214ENST00000614932 ZNF706Q9Y5V0 76 aaPredicted RBP6.53□□□□□ -1.36
VPS39-214ENST00000614932 RTL8CO15255 209 aa6.52□□□□□ -1.37
VPS39-214ENST00000614932 CMYA5Q8N3K9 4069 aa6.52□□□□□ -1.37
VPS39-214ENST00000614932 NBEAL1Q6ZS30 2694 aa6.52□□□□□ -1.37
VPS39-214ENST00000614932 BAHCC1Q9P281 2608 aa6.51□□□□□ -1.37
VPS39-214ENST00000614932 GVQW2A0A096LPI5 108 aaPredicted RBP6.51□□□□□ -1.37
VPS39-214ENST00000614932 KRTAP29-1A8MX34 341 aaPredicted RBP6.5□□□□□ -1.37
VPS39-214ENST00000614932 TNP2Q05952 138 aa6.49□□□□□ -1.37
VPS39-214ENST00000614932 C7orf33Q8WU49 177 aa6.49□□□□□ -1.37
VPS39-214ENST00000614932 IGLV1-50A0A075B6I6 118 aa6.49□□□□□ -1.37
VPS39-214ENST00000614932 LELP1Q5T871 98 aa6.49□□□□□ -1.37
VPS39-214ENST00000614932 MGAM2Q2M2H8 2515 aa6.48□□□□□ -1.37
VPS39-214ENST00000614932 C6orf48Q9UBA6 75 aa6.48□□□□□ -1.37
VPS39-214ENST00000614932 CSAG1Q6PB30 78 aa6.47□□□□□ -1.37
VPS39-214ENST00000614932 IGLV5-37A0A075B6J1 123 aa6.44□□□□□ -1.38
VPS39-214ENST00000614932 DEFB131BA0A096LNP1 70 aa6.44□□□□□ -1.38
VPS39-214ENST00000614932 Q6ZR54 194 aa6.44□□□□□ -1.38
VPS39-214ENST00000614932 PCOTHQ58A44 107 aa6.43□□□□□ -1.38
VPS39-214ENST00000614932 HRES1P13985 223 aa6.43□□□□□ -1.38
VPS39-214ENST00000614932 DHRS4-AS1Q9P1J3 65 aa6.43□□□□□ -1.38
VPS39-214ENST00000614932 EGFEM1PQ0D2K5 195 aa6.42□□□□□ -1.38
VPS39-214ENST00000614932 C1orf134Q5TEV5 83 aa6.42□□□□□ -1.38
VPS39-214ENST00000614932 PRR34Q9NV39 138 aa6.42□□□□□ -1.38
VPS39-214ENST00000614932 LYSTQ99698 3801 aa6.41□□□□□ -1.38
VPS39-214ENST00000614932 RPL37AP61513 92 aaKnown RBP6.41□□□□□ -1.38
VPS39-214ENST00000614932 IGHV6-1A0A0B4J1U7 121 aa6.39□□□□□ -1.39
VPS39-214ENST00000614932 CAMK2N2Q96S95 79 aa6.39□□□□□ -1.39
VPS39-214ENST00000614932 SPATA8Q6RVD6 105 aa6.38□□□□□ -1.39
VPS39-214ENST00000614932 Q6ZRX8 168 aa6.37□□□□□ -1.39
VPS39-214ENST00000614932 CSMD3Q7Z407 3707 aa6.37□□□□□ -1.39
VPS39-214ENST00000614932 K7EIL1 84 aa6.37□□□□□ -1.39
VPS39-214ENST00000614932 DNAH3Q8TD57 4116 aa6.36□□□□□ -1.39
VPS39-214ENST00000614932 HUWE1Q7Z6Z7 4374 aaKnown RBP6.36□□□□□ -1.39
VPS39-214ENST00000614932 CASC10Q5T4H9 136 aa6.35□□□□□ -1.39
VPS39-214ENST00000614932 C15orf56Q8N910 161 aa6.35□□□□□ -1.39
VPS39-214ENST00000614932 STAB2Q8WWQ8 2551 aa6.35□□□□□ -1.39
VPS39-214ENST00000614932 COL7A1Q02388 2944 aa6.35□□□□□ -1.39
VPS39-214ENST00000614932 A0A087WSZ3 146 aa6.35□□□□□ -1.39
VPS39-214ENST00000614932 KRTAP26-1Q6PEX3 210 aa6.35□□□□□ -1.39
VPS39-214ENST00000614932 ROMO1P60602 79 aa6.34□□□□□ -1.39
VPS39-214ENST00000614932 TENM2Q9NT68 2774 aa6.34□□□□□ -1.4
VPS39-214ENST00000614932 IGFL1Q6UW32 110 aa6.33□□□□□ -1.4
VPS39-214ENST00000614932 A8MWP4 228 aa6.32□□□□□ -1.4
VPS39-214ENST00000614932 H3BNG1 76 aa6.32□□□□□ -1.4
VPS39-214ENST00000614932 A0A0G2JQZ4 141 aa6.32□□□□□ -1.4
VPS39-214ENST00000614932 A0A1W2PNN7 141 aa6.32□□□□□ -1.4
VPS39-214ENST00000614932 KRTAP4-16G5E9R7 235 aaPredicted RBP6.31□□□□□ -1.4
VPS39-214ENST00000614932 REG3GQ6UW15 175 aa6.31□□□□□ -1.4
VPS39-214ENST00000614932 LINC01556Q5JQF7 62 aa6.31□□□□□ -1.4
VPS39-214ENST00000614932 IGKV2-24A0A0C4DH68 120 aa6.3□□□□□ -1.4
VPS39-214ENST00000614932 MIR22HGQ0VDD5 57 aa6.3□□□□□ -1.4
VPS39-214ENST00000614932 DNAH10Q8IVF4 4471 aa6.3□□□□□ -1.4
VPS39-214ENST00000614932 TP53AIP1Q9HCN2 124 aa6.3□□□□□ -1.4
VPS39-214ENST00000614932 A0A0A0MQY5 61 aa6.29□□□□□ -1.4
VPS39-214ENST00000614932 MMP24-AS1A0A0U1RRL7 71 aa6.28□□□□□ -1.4
VPS39-214ENST00000614932 A0A1B0GU69 56 aa6.28□□□□□ -1.4
VPS39-214ENST00000614932 FAM168BA1KXE4 195 aa6.27□□□□□ -1.41
VPS39-214ENST00000614932 SPRR1AP35321 89 aa6.27□□□□□ -1.41
VPS39-214ENST00000614932 RPL37AP8A6NKH3 93 aa6.26□□□□□ -1.41
VPS39-214ENST00000614932 DNAH10OSP0CZ25 163 aa6.26□□□□□ -1.41
VPS39-214ENST00000614932 UQCR11O14957 56 aa6.26□□□□□ -1.41
VPS39-214ENST00000614932 ZNF861PO60384 105 aa6.26□□□□□ -1.41
VPS39-214ENST00000614932 DNAH7Q8WXX0 4024 aa6.25□□□□□ -1.41
VPS39-214ENST00000614932 LINC00472Q9H8W2 130 aa6.25□□□□□ -1.41
VPS39-214ENST00000614932 IGLV8-61A0A075B6I0 122 aa6.24□□□□□ -1.41
VPS39-214ENST00000614932 DNAH9Q9NYC9 4486 aa6.24□□□□□ -1.41
VPS39-214ENST00000614932 KRTAP1-5Q9BYS1 174 aa6.23□□□□□ -1.41
VPS39-214ENST00000614932 ACYP2P14621 99 aa6.21□□□□□ -1.41
VPS39-214ENST00000614932 DNAH1Q9P2D7 4330 aa6.21□□□□□ -1.41
VPS39-214ENST00000614932 KRTAP25-1Q3LHN0 102 aa6.21□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 98.2 ms