RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 LCE2DQ5TA82 110 aaPredicted RBP9.66□□□□□ -0.86
CCDC28A-202ENST00000611852 C9JAW5 83 aa9.65□□□□□ -0.86
CCDC28A-202ENST00000611852 TRACP01848 142 aa9.64□□□□□ -0.87
CCDC28A-202ENST00000611852 SPRR1BP22528 89 aa9.64□□□□□ -0.87
CCDC28A-202ENST00000611852 MTURNQ8N3F0 131 aa9.64□□□□□ -0.87
CCDC28A-202ENST00000611852 LINC00304Q8N9R0 145 aa9.63□□□□□ -0.87
CCDC28A-202ENST00000611852 PRO0461Q9UI25 63 aa9.63□□□□□ -0.87
CCDC28A-202ENST00000611852 IGLV9-49A0A0B4J1Y8 123 aa9.62□□□□□ -0.87
CCDC28A-202ENST00000611852 DNAL4O96015 105 aa9.62□□□□□ -0.87
CCDC28A-202ENST00000611852 LINC00575Q6W349 94 aa9.62□□□□□ -0.87
CCDC28A-202ENST00000611852 FAM218AQ96MZ4 157 aa9.62□□□□□ -0.87
CCDC28A-202ENST00000611852 HMCN2Q8NDA2 5059 aa9.62□□□□□ -0.87
CCDC28A-202ENST00000611852 SLC25A20O43772 301 aa9.61□□□□□ -0.87
CCDC28A-202ENST00000611852 SNCGO76070 127 aa9.61□□□□□ -0.87
CCDC28A-202ENST00000611852 MOBPQ13875 183 aa9.61□□□□□ -0.87
CCDC28A-202ENST00000611852 DEFB105AQ8NG35 78 aa9.61□□□□□ -0.87
CCDC28A-202ENST00000611852 A0A1B0GX51 115 aa9.6□□□□□ -0.87
CCDC28A-202ENST00000611852 LINC01547P58512 204 aaPredicted RBP9.6□□□□□ -0.87
CCDC28A-202ENST00000611852 IGLV5-48A0A075B6I7 105 aa9.59□□□□□ -0.87
CCDC28A-202ENST00000611852 TEX49A0A1B0GTD5 131 aa9.59□□□□□ -0.87
CCDC28A-202ENST00000611852 H3BT86 120 aa9.59□□□□□ -0.87
CCDC28A-202ENST00000611852 Q8NBF4 154 aa9.59□□□□□ -0.87
CCDC28A-202ENST00000611852 hADV29S1A0JD25 119 aa9.58□□□□□ -0.88
CCDC28A-202ENST00000611852 SSBP3-AS1Q7Z2R9 100 aa9.58□□□□□ -0.88
CCDC28A-202ENST00000611852 ANKRD29Q8N6D5 301 aa9.58□□□□□ -0.88
CCDC28A-202ENST00000611852 SMCPP49901 116 aaPredicted RBP9.57□□□□□ -0.88
CCDC28A-202ENST00000611852 C9orf153Q5TBE3 101 aa9.56□□□□□ -0.88
CCDC28A-202ENST00000611852 LAMTOR3Q9UHA4 124 aa9.56□□□□□ -0.88
CCDC28A-202ENST00000611852 SPAG11AQ6PDA7 123 aa9.56□□□□□ -0.88
CCDC28A-202ENST00000611852 Q6ZQY7 126 aa9.55□□□□□ -0.88
CCDC28A-202ENST00000611852 SMIM29Q86T20 159 aa9.55□□□□□ -0.88
CCDC28A-202ENST00000611852 ETDBQ3ZM63 59 aa9.54□□□□□ -0.88
CCDC28A-202ENST00000611852 Q8N377 158 aa9.54□□□□□ -0.88
CCDC28A-202ENST00000611852 C4orf48Q5BLP8 95 aa9.53□□□□□ -0.88
CCDC28A-202ENST00000611852 TEN1Q86WV5 123 aa9.53□□□□□ -0.88
CCDC28A-202ENST00000611852 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.52□□□□□ -0.88
CCDC28A-202ENST00000611852 ORMDL1Q9P0S3 153 aa9.52□□□□□ -0.88
CCDC28A-202ENST00000611852 BAALC-AS2P0C853 105 aa9.51□□□□□ -0.89
CCDC28A-202ENST00000611852 SPINK1P00995 79 aa9.5□□□□□ -0.89
CCDC28A-202ENST00000611852 H3BQ85 93 aa9.47□□□□□ -0.89
CCDC28A-202ENST00000611852 GHRHP01286 108 aa9.47□□□□□ -0.89
CCDC28A-202ENST00000611852 PRR4Q16378 134 aa9.47□□□□□ -0.89
CCDC28A-202ENST00000611852 OCIAD2Q56VL3 154 aa9.47□□□□□ -0.89
CCDC28A-202ENST00000611852 PPDPFLQ8WWR9 84 aa9.47□□□□□ -0.89
CCDC28A-202ENST00000611852 K7ERU9 68 aa9.46□□□□□ -0.89
CCDC28A-202ENST00000611852 RETNLBQ9BQ08 111 aa9.46□□□□□ -0.89
CCDC28A-202ENST00000611852 J3QR89 54 aa9.46□□□□□ -0.9
CCDC28A-202ENST00000611852 TMEM256-PLSCR3K7ERE1 68 aa9.46□□□□□ -0.9
CCDC28A-202ENST00000611852 RPS29P62273 56 aaKnown RBP9.46□□□□□ -0.9
CCDC28A-202ENST00000611852 F8WEM9 126 aa9.42□□□□□ -0.9
CCDC28A-202ENST00000611852 A0A0G2JQZ4 141 aa9.41□□□□□ -0.9
CCDC28A-202ENST00000611852 HRCT1Q6UXD1 115 aa9.41□□□□□ -0.9
CCDC28A-202ENST00000611852 LRP2P98164 4655 aa9.4□□□□□ -0.9
CCDC28A-202ENST00000611852 CD164Q04900 197 aa9.4□□□□□ -0.91
CCDC28A-202ENST00000611852 IGLV8-61A0A075B6I0 122 aa9.39□□□□□ -0.91
CCDC28A-202ENST00000611852 JMJD7-PLA2G4BH0Y9G9 81 aa9.37□□□□□ -0.91
CCDC28A-202ENST00000611852 Q6JHZ5 121 aa9.36□□□□□ -0.91
CCDC28A-202ENST00000611852 OBSCN-AS1Q96MR7 158 aa9.36□□□□□ -0.91
CCDC28A-202ENST00000611852 LPAP08519 4548 aa9.35□□□□□ -0.91
CCDC28A-202ENST00000611852 UBR4Q5T4S7 5183 aa9.35□□□□□ -0.91
CCDC28A-202ENST00000611852 IGLV7-46A0A075B6I9 117 aa9.35□□□□□ -0.91
CCDC28A-202ENST00000611852 NDUFV3P56181 108 aaKnown RBP9.35□□□□□ -0.91
CCDC28A-202ENST00000611852 FP248Q71RG6 208 aaPredicted RBP9.35□□□□□ -0.91
CCDC28A-202ENST00000611852 LIMD2Q9BT23 127 aa9.35□□□□□ -0.91
CCDC28A-202ENST00000611852 IGFL1Q6UW32 110 aa9.34□□□□□ -0.91
CCDC28A-202ENST00000611852 A0A1B0GV72 72 aa9.32□□□□□ -0.92
CCDC28A-202ENST00000611852 C14orf132Q9NPU4 83 aa9.32□□□□□ -0.92
CCDC28A-202ENST00000611852 Q5XG85 94 aa9.31□□□□□ -0.92
CCDC28A-202ENST00000611852 RBM3P98179 157 aaKnown RBP9.3□□□□□ -0.92
CCDC28A-202ENST00000611852 TPRXLQ17RH7 258 aa9.3□□□□□ -0.92
CCDC28A-202ENST00000611852 FAM240AA0A1B0GVK7 77 aa9.28□□□□□ -0.92
CCDC28A-202ENST00000611852 DSCR8Q96T75 97 aa9.27□□□□□ -0.93
CCDC28A-202ENST00000611852 TRBV7-7A0A0K0K1E9 115 aa9.26□□□□□ -0.93
CCDC28A-202ENST00000611852 PDE6GP18545 87 aa9.26□□□□□ -0.93
CCDC28A-202ENST00000611852 VPS25Q9BRG1 176 aa9.26□□□□□ -0.93
CCDC28A-202ENST00000611852 LOC110117498A0A087WWA1 95 aa9.25□□□□□ -0.93
CCDC28A-202ENST00000611852 ACYP1P07311 99 aa9.25□□□□□ -0.93
CCDC28A-202ENST00000611852 C21orf62-AS1Q17RA5 79 aa9.25□□□□□ -0.93
CCDC28A-202ENST00000611852 KRTAP13-3Q3SY46 172 aa9.24□□□□□ -0.93
CCDC28A-202ENST00000611852 CCKP06307 115 aa9.23□□□□□ -0.93
CCDC28A-202ENST00000611852 C1orf195Q5TG92 126 aa9.22□□□□□ -0.93
CCDC28A-202ENST00000611852 Q6Q795 121 aa9.22□□□□□ -0.93
CCDC28A-202ENST00000611852 CDIP1Q9H305 208 aa9.22□□□□□ -0.93
CCDC28A-202ENST00000611852 TRBV7-4A0A0J9YYF1 115 aa9.21□□□□□ -0.93
CCDC28A-202ENST00000611852 Q6ZQT0 140 aa9.21□□□□□ -0.93
CCDC28A-202ENST00000611852 ASB16-AS1Q495Z4 193 aa9.19□□□□□ -0.94
CCDC28A-202ENST00000611852 A0A1W2PNM2 257 aa9.17□□□□□ -0.94
CCDC28A-202ENST00000611852 A0A087WSZ3 146 aa9.14□□□□□ -0.95
CCDC28A-202ENST00000611852 SS18L2Q9UHA2 77 aa9.13□□□□□ -0.95
CCDC28A-202ENST00000611852 RNF213Q63HN8 5207 aa9.11□□□□□ -0.95
CCDC28A-202ENST00000611852 LINC00846Q9NV44 126 aa9.1□□□□□ -0.95
CCDC28A-202ENST00000611852 UBL5Q9BZL1 73 aa9.09□□□□□ -0.95
CCDC28A-202ENST00000611852 A0A1B0GW54 56 aa9.08□□□□□ -0.96
CCDC28A-202ENST00000611852 C9orf92A6NGG3 77 aa9.08□□□□□ -0.96
CCDC28A-202ENST00000611852 XP32Q5T750 250 aa9.08□□□□□ -0.96
CCDC28A-202ENST00000611852 LINC00643Q86TS7 51 aa9.08□□□□□ -0.96
CCDC28A-202ENST00000611852 SIGMAR1Q99720 223 aa9.08□□□□□ -0.96
CCDC28A-202ENST00000611852 Q96NJ1 140 aa9.05□□□□□ -0.96
CCDC28A-202ENST00000611852 MT-ATP8P03928 68 aa9.04□□□□□ -0.96
CCDC28A-202ENST00000611852 ATP5EP2Q5VTU8 51 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 98.4 ms