RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 UBE2D3P61077 147 aa2.19□□□□□ -2.06
LINC00540-201ENST00000611481 UBE2D2P62837 147 aa2.19□□□□□ -2.06
LINC00540-201ENST00000611481 MOBPQ13875 183 aa2.19□□□□□ -2.06
LINC00540-201ENST00000611481 MEIG1Q5JSS6 88 aa2.19□□□□□ -2.06
LINC00540-201ENST00000611481 CLLU1Q5K131 121 aa2.19□□□□□ -2.06
LINC00540-201ENST00000611481 Q6AWC8 147 aa2.19□□□□□ -2.06
LINC00540-201ENST00000611481 C20orf166-AS1Q96NR2 134 aa2.19□□□□□ -2.06
LINC00540-201ENST00000611481 TMSB15BA0A087X1C1 80 aa2.18□□□□□ -2.06
LINC00540-201ENST00000611481 C3orf85A0A1B0GTC6 90 aa2.18□□□□□ -2.06
LINC00540-201ENST00000611481 RBAKDNA6NC62 111 aa2.18□□□□□ -2.06
LINC00540-201ENST00000611481 TRACP01848 142 aa2.18□□□□□ -2.06
LINC00540-201ENST00000611481 LINC01545Q5VT33 79 aa2.18□□□□□ -2.06
LINC00540-201ENST00000611481 COPS9Q8WXC6 57 aa2.18□□□□□ -2.06
LINC00540-201ENST00000611481 TVP23CQ96ET8 276 aa2.18□□□□□ -2.06
LINC00540-201ENST00000611481 CIB3Q96Q77 187 aaPredicted RBP2.18□□□□□ -2.06
LINC00540-201ENST00000611481 NPVFQ9HCQ7 196 aa2.18□□□□□ -2.06
LINC00540-201ENST00000611481 TRBV7-3A0A075B6L6 115 aa2.17□□□□□ -2.06
LINC00540-201ENST00000611481 IGKV3OR2-268A0A0C4DH90 116 aa2.17□□□□□ -2.06
LINC00540-201ENST00000611481 S100A10P60903 97 aa2.17□□□□□ -2.06
LINC00540-201ENST00000611481 FAM74A4Q5TZK3 123 aa2.17□□□□□ -2.06
LINC00540-201ENST00000611481 KCNRGQ8N5I3 272 aa2.17□□□□□ -2.06
LINC00540-201ENST00000611481 NDUFA12Q9UI09 145 aa2.17□□□□□ -2.06
LINC00540-201ENST00000611481 ZFP30Q9Y2G7 519 aa2.17□□□□□ -2.06
LINC00540-201ENST00000611481 AHNAK2Q8IVF2 5795 aa2.17□□□□□ -2.06
LINC00540-201ENST00000611481 PDCD5O14737 125 aa2.16□□□□□ -2.06
LINC00540-201ENST00000611481 IAPPP10997 89 aa2.16□□□□□ -2.06
LINC00540-201ENST00000611481 CKS2P33552 79 aa2.16□□□□□ -2.06
LINC00540-201ENST00000611481 SPAG11AQ6PDA7 123 aa2.16□□□□□ -2.06
LINC00540-201ENST00000611481 TEX261Q6UWH6 196 aa2.16□□□□□ -2.06
LINC00540-201ENST00000611481 Q6ZUT4 128 aa2.16□□□□□ -2.06
LINC00540-201ENST00000611481 C8orf59Q8N0T1 100 aaPredicted RBP2.16□□□□□ -2.06
LINC00540-201ENST00000611481 TMEM254Q8TBM7 123 aa2.16□□□□□ -2.06
LINC00540-201ENST00000611481 SPANXDQ9BXN6 97 aa2.16□□□□□ -2.06
LINC00540-201ENST00000611481 PRO2289Q9P1D8 64 aa2.16□□□□□ -2.06
LINC00540-201ENST00000611481 TRAV1-2A0A0B4J238 106 aa2.15□□□□□ -2.07
LINC00540-201ENST00000611481 TRAV21A0A0B4J279 112 aa2.15□□□□□ -2.07
LINC00540-201ENST00000611481 TRBV10-1A0A0K0K1A3 114 aa2.15□□□□□ -2.07
LINC00540-201ENST00000611481 FNDC10F2Z333 226 aa2.15□□□□□ -2.07
LINC00540-201ENST00000611481 CCDC179H3BU77 68 aa2.15□□□□□ -2.07
LINC00540-201ENST00000611481 RAB37Q96AX2 223 aa2.15□□□□□ -2.07
LINC00540-201ENST00000611481 CACFD1Q9UGQ2 172 aa2.15□□□□□ -2.07
LINC00540-201ENST00000611481 TRBV25-1A0A075B6N4 114 aa2.14□□□□□ -2.07
LINC00540-201ENST00000611481 A0A087WSZ3 146 aa2.14□□□□□ -2.07
LINC00540-201ENST00000611481 A0A087WXM4 84 aa2.14□□□□□ -2.07
LINC00540-201ENST00000611481 A6NN06 94 aa2.14□□□□□ -2.07
LINC00540-201ENST00000611481 C10orf113Q5VZT2 155 aa2.14□□□□□ -2.07
LINC00540-201ENST00000611481 GTF2H5Q6ZYL4 71 aa2.14□□□□□ -2.07
LINC00540-201ENST00000611481 AQP10Q96PS8 301 aa2.14□□□□□ -2.07
LINC00540-201ENST00000611481 NAA60Q9H7X0 242 aa2.14□□□□□ -2.07
LINC00540-201ENST00000611481 CYTL1Q9NRR1 136 aa2.14□□□□□ -2.07
LINC00540-201ENST00000611481 SPRR5A0A1B0GTR4 108 aa2.13□□□□□ -2.07
LINC00540-201ENST00000611481 TMEM218A2RU14 115 aa2.13□□□□□ -2.07
LINC00540-201ENST00000611481 NUPR1O60356 82 aa2.13□□□□□ -2.07
LINC00540-201ENST00000611481 IGLV6-57P01721 117 aa2.13□□□□□ -2.07
LINC00540-201ENST00000611481 RNASE3P12724 160 aaKnown RBP2.13□□□□□ -2.07
LINC00540-201ENST00000611481 SPRR2DP22532 72 aa2.13□□□□□ -2.07
LINC00540-201ENST00000611481 DSTQ03001 7570 aaKnown RBP2.13□□□□□ -2.07
LINC00540-201ENST00000611481 TRAV12-1A0A0B4J245 112 aa2.12□□□□□ -2.07
LINC00540-201ENST00000611481 IGHV1-24A0A0C4DH33 117 aa2.12□□□□□ -2.07
LINC00540-201ENST00000611481 TRBV6-1A0A0K0K1D8 114 aa2.12□□□□□ -2.07
LINC00540-201ENST00000611481 C9orf92A6NGG3 77 aa2.12□□□□□ -2.07
LINC00540-201ENST00000611481 M0R143 59 aa2.12□□□□□ -2.07
LINC00540-201ENST00000611481 PDE6HQ13956 83 aa2.12□□□□□ -2.07
LINC00540-201ENST00000611481 IQCJQ1A5X6 159 aa2.12□□□□□ -2.07
LINC00540-201ENST00000611481 C2orf82Q6UX34 121 aa2.12□□□□□ -2.07
LINC00540-201ENST00000611481 ATP11AUNQ6ZP68 121 aa2.12□□□□□ -2.07
LINC00540-201ENST00000611481 S100ZQ8WXG8 99 aa2.12□□□□□ -2.07
LINC00540-201ENST00000611481 SMIM7Q9BQ49 75 aa2.12□□□□□ -2.07
LINC00540-201ENST00000611481 LENEPQ9Y5L5 61 aa2.12□□□□□ -2.07
LINC00540-201ENST00000611481 CCL25O15444 150 aa2.11□□□□□ -2.07
LINC00540-201ENST00000611481 ERC2-IT1O76042 136 aa2.11□□□□□ -2.07
LINC00540-201ENST00000611481 CASC2Q6XLA1 102 aa2.11□□□□□ -2.07
LINC00540-201ENST00000611481 SNX29P2Q8IUI4 249 aa2.11□□□□□ -2.07
LINC00540-201ENST00000611481 FAM19A2Q8N3H0 131 aa2.11□□□□□ -2.07
LINC00540-201ENST00000611481 BCE1O60756 84 aa2.1□□□□□ -2.07
LINC00540-201ENST00000611481 HSD52Q0P140 79 aa2.1□□□□□ -2.07
LINC00540-201ENST00000611481 MIC13Q5XKP0 118 aa2.1□□□□□ -2.07
LINC00540-201ENST00000611481 LINC00299Q6ZSB3 139 aa2.1□□□□□ -2.07
LINC00540-201ENST00000611481 SFT2D1Q8WV19 159 aa2.1□□□□□ -2.07
LINC00540-201ENST00000611481 SPRR2FQ96RM1 72 aa2.1□□□□□ -2.07
LINC00540-201ENST00000611481 SEC11CQ9BY50 192 aa2.1□□□□□ -2.07
LINC00540-201ENST00000611481 TMEM14CQ9P0S9 112 aa2.1□□□□□ -2.07
LINC00540-201ENST00000611481 SERP1Q9Y6X1 66 aa2.1□□□□□ -2.07
LINC00540-201ENST00000611481 SPINK1P00995 79 aa2.09□□□□□ -2.07
LINC00540-201ENST00000611481 ZNF56Q15929 161 aa2.09□□□□□ -2.07
LINC00540-201ENST00000611481 MRPL54Q6P161 138 aaKnown RBP2.09□□□□□ -2.07
LINC00540-201ENST00000611481 IGFL1Q6UW32 110 aa2.09□□□□□ -2.07
LINC00540-201ENST00000611481 TIMM21Q9BVV7 248 aa2.09□□□□□ -2.07
LINC00540-201ENST00000611481 LOC107984156A0A0G2JMH3 177 aa2.08□□□□□ -2.08
LINC00540-201ENST00000611481 H3BVH4 76 aa2.08□□□□□ -2.08
LINC00540-201ENST00000611481 KRTAP5-10Q6L8G5 202 aa2.08□□□□□ -2.08
LINC00540-201ENST00000611481 ARL17AQ8IVW1 177 aa2.08□□□□□ -2.08
LINC00540-201ENST00000611481 MGST2Q99735 147 aa2.08□□□□□ -2.08
LINC00540-201ENST00000611481 NMES1Q9C002 83 aa2.08□□□□□ -2.08
LINC00540-201ENST00000611481 A0A0G2JQZ4 141 aa2.07□□□□□ -2.08
LINC00540-201ENST00000611481 ADCYAP1P18509 176 aa2.07□□□□□ -2.08
LINC00540-201ENST00000611481 ARMS2P0C7Q2 107 aa2.06□□□□□ -2.08
LINC00540-201ENST00000611481 KRTAP21-2Q3LI59 83 aa2.06□□□□□ -2.08
LINC00540-201ENST00000611481 C9orf153Q5TBE3 101 aa2.06□□□□□ -2.08
LINC00540-201ENST00000611481 SVBPQ8N300 66 aa2.06□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms