RNA–Protein interactions for RNA: ENST00000608957.5

LINC00539-204, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 869 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-204ENST00000608957 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.95□□□□□ -1.3
LINC00539-204ENST00000608957 Q6ZQY7 126 aa6.95□□□□□ -1.3
LINC00539-204ENST00000608957 BAALC-AS2P0C853 105 aa6.94□□□□□ -1.3
LINC00539-204ENST00000608957 SMCR5Q8TEV8 140 aa6.94□□□□□ -1.3
LINC00539-204ENST00000608957 KRTAP1-4P0C5Y4 121 aa6.93□□□□□ -1.3
LINC00539-204ENST00000608957 KRTAP13-1Q8IUC0 172 aa6.93□□□□□ -1.3
LINC00539-204ENST00000608957 OCIAD2Q56VL3 154 aa6.92□□□□□ -1.3
LINC00539-204ENST00000608957 PRR26Q8N8Z3 221 aa6.92□□□□□ -1.3
LINC00539-204ENST00000608957 HIGD2AQ9BW72 106 aa6.92□□□□□ -1.3
LINC00539-204ENST00000608957 H3BQ85 93 aa6.91□□□□□ -1.3
LINC00539-204ENST00000608957 ERC2-IT1O76042 136 aa6.91□□□□□ -1.3
LINC00539-204ENST00000608957 GHRHP01286 108 aa6.91□□□□□ -1.3
LINC00539-204ENST00000608957 TMEM256-PLSCR3K7ERE1 68 aa6.9□□□□□ -1.3
LINC00539-204ENST00000608957 ETDBQ3ZM63 59 aa6.9□□□□□ -1.3
LINC00539-204ENST00000608957 TEN1Q86WV5 123 aa6.9□□□□□ -1.3
LINC00539-204ENST00000608957 IGLV5-48A0A075B6I7 105 aa6.88□□□□□ -1.31
LINC00539-204ENST00000608957 ZNF861PO60384 105 aa6.88□□□□□ -1.31
LINC00539-204ENST00000608957 ST20-AS1Q8NBB2 130 aa6.88□□□□□ -1.31
LINC00539-204ENST00000608957 PPDPFLQ8WWR9 84 aa6.88□□□□□ -1.31
LINC00539-204ENST00000608957 LINC01547P58512 204 aaPredicted RBP6.87□□□□□ -1.31
LINC00539-204ENST00000608957 DEFB105AQ8NG35 78 aa6.87□□□□□ -1.31
LINC00539-204ENST00000608957 LRP2P98164 4655 aa6.87□□□□□ -1.31
LINC00539-204ENST00000608957 UBR4Q5T4S7 5183 aa6.87□□□□□ -1.31
LINC00539-204ENST00000608957 Q8N377 158 aa6.86□□□□□ -1.31
LINC00539-204ENST00000608957 TEX49A0A1B0GTD5 131 aa6.84□□□□□ -1.31
LINC00539-204ENST00000608957 LAMTOR3Q9UHA4 124 aa6.84□□□□□ -1.31
LINC00539-204ENST00000608957 ZNF706Q9Y5V0 76 aaPredicted RBP6.84□□□□□ -1.31
LINC00539-204ENST00000608957 A0A1B0GV72 72 aa6.83□□□□□ -1.32
LINC00539-204ENST00000608957 JMJD7-PLA2G4BH0Y9G9 81 aa6.83□□□□□ -1.32
LINC00539-204ENST00000608957 NDUFV3P56181 108 aaKnown RBP6.83□□□□□ -1.32
LINC00539-204ENST00000608957 OBSCN-AS1Q96MR7 158 aa6.83□□□□□ -1.32
LINC00539-204ENST00000608957 SPRR1BP22528 89 aa6.82□□□□□ -1.32
LINC00539-204ENST00000608957 SPRR4Q96PI1 79 aa6.82□□□□□ -1.32
LINC00539-204ENST00000608957 A0A087X002 238 aa6.81□□□□□ -1.32
LINC00539-204ENST00000608957 GAGE2AQ6NT46 116 aa6.81□□□□□ -1.32
LINC00539-204ENST00000608957 LPAP08519 4548 aa6.8□□□□□ -1.32
LINC00539-204ENST00000608957 C3orf22Q8N5N4 141 aa6.8□□□□□ -1.32
LINC00539-204ENST00000608957 C14orf132Q9NPU4 83 aa6.8□□□□□ -1.32
LINC00539-204ENST00000608957 RBM3P98179 157 aaKnown RBP6.79□□□□□ -1.32
LINC00539-204ENST00000608957 LINC00483Q53H64 154 aa6.79□□□□□ -1.32
LINC00539-204ENST00000608957 SMIM29Q86T20 159 aa6.79□□□□□ -1.32
LINC00539-204ENST00000608957 ANAPC11Q9NYG5 84 aa6.79□□□□□ -1.32
LINC00539-204ENST00000608957 F8WEM9 126 aa6.78□□□□□ -1.32
LINC00539-204ENST00000608957 J3QR89 54 aa6.78□□□□□ -1.32
LINC00539-204ENST00000608957 K7ERU9 68 aa6.77□□□□□ -1.33
LINC00539-204ENST00000608957 KRTAP13-2Q52LG2 175 aa6.77□□□□□ -1.33
LINC00539-204ENST00000608957 DSCR8Q96T75 97 aa6.77□□□□□ -1.33
LINC00539-204ENST00000608957 LOC110117498A0A087WWA1 95 aa6.76□□□□□ -1.33
LINC00539-204ENST00000608957 TRBV7-4A0A0J9YYF1 115 aa6.76□□□□□ -1.33
LINC00539-204ENST00000608957 PDE6GP18545 87 aa6.75□□□□□ -1.33
LINC00539-204ENST00000608957 Q6ZQT0 140 aa6.74□□□□□ -1.33
LINC00539-204ENST00000608957 IGLV8-61A0A075B6I0 122 aa6.73□□□□□ -1.33
LINC00539-204ENST00000608957 CCKP06307 115 aa6.73□□□□□ -1.33
LINC00539-204ENST00000608957 CRYGAP11844 174 aa6.73□□□□□ -1.33
LINC00539-204ENST00000608957 C21orf62-AS1Q17RA5 79 aa6.73□□□□□ -1.33
LINC00539-204ENST00000608957 C4orf48Q5BLP8 95 aa6.73□□□□□ -1.33
LINC00539-204ENST00000608957 TYMSOSQ8TAI1 123 aa6.72□□□□□ -1.33
LINC00539-204ENST00000608957 IGLV9-49A0A0B4J1Y8 123 aa6.71□□□□□ -1.34
LINC00539-204ENST00000608957 FAM240AA0A1B0GVK7 77 aa6.71□□□□□ -1.34
LINC00539-204ENST00000608957 C9orf153Q5TBE3 101 aa6.71□□□□□ -1.34
LINC00539-204ENST00000608957 Q6JHZ5 121 aa6.71□□□□□ -1.34
LINC00539-204ENST00000608957 FAM229BQ4G0N7 80 aa6.7□□□□□ -1.34
LINC00539-204ENST00000608957 IGFL1Q6UW32 110 aa6.7□□□□□ -1.34
LINC00539-204ENST00000608957 Q8NBF4 154 aa6.7□□□□□ -1.34
LINC00539-204ENST00000608957 VPS25Q9BRG1 176 aa6.7□□□□□ -1.34
LINC00539-204ENST00000608957 ACYP1P07311 99 aa6.69□□□□□ -1.34
LINC00539-204ENST00000608957 MOBPQ13875 183 aa6.69□□□□□ -1.34
LINC00539-204ENST00000608957 PRR4Q16378 134 aa6.69□□□□□ -1.34
LINC00539-204ENST00000608957 A0A1W2PNM2 257 aa6.67□□□□□ -1.34
LINC00539-204ENST00000608957 RNF213Q63HN8 5207 aa6.67□□□□□ -1.34
LINC00539-204ENST00000608957 A0A0G2JQZ4 141 aa6.66□□□□□ -1.34
LINC00539-204ENST00000608957 LINC00304Q8N9R0 145 aa6.65□□□□□ -1.34
LINC00539-204ENST00000608957 A0A1B0GW54 56 aa6.64□□□□□ -1.35
LINC00539-204ENST00000608957 RETNLBQ9BQ08 111 aa6.64□□□□□ -1.35
LINC00539-204ENST00000608957 Q6Q795 121 aa6.63□□□□□ -1.35
LINC00539-204ENST00000608957 SSBP3-AS1Q7Z2R9 100 aa6.63□□□□□ -1.35
LINC00539-204ENST00000608957 CDIP1Q9H305 208 aa6.63□□□□□ -1.35
LINC00539-204ENST00000608957 LINC00846Q9NV44 126 aa6.63□□□□□ -1.35
LINC00539-204ENST00000608957 UBL5Q9BZL1 73 aa6.6□□□□□ -1.35
LINC00539-204ENST00000608957 A0A087WSZ3 146 aa6.59□□□□□ -1.35
LINC00539-204ENST00000608957 TRBV7-7A0A0K0K1E9 115 aa6.59□□□□□ -1.35
LINC00539-204ENST00000608957 CD164Q04900 197 aa6.58□□□□□ -1.36
LINC00539-204ENST00000608957 HRCT1Q6UXD1 115 aa6.58□□□□□ -1.36
LINC00539-204ENST00000608957 Q6ZVQ6 151 aa6.58□□□□□ -1.36
LINC00539-204ENST00000608957 LINC00643Q86TS7 51 aa6.57□□□□□ -1.36
LINC00539-204ENST00000608957 NREPQ16612 68 aa6.55□□□□□ -1.36
LINC00539-204ENST00000608957 ATP5EP2Q5VTU8 51 aa6.54□□□□□ -1.36
LINC00539-204ENST00000608957 SS18L2Q9UHA2 77 aa6.54□□□□□ -1.36
LINC00539-204ENST00000608957 IGLV7-46A0A075B6I9 117 aa6.53□□□□□ -1.36
LINC00539-204ENST00000608957 SPAG11AQ6PDA7 123 aa6.53□□□□□ -1.36
LINC00539-204ENST00000608957 MUC17Q685J3 4493 aa6.52□□□□□ -1.36
LINC00539-204ENST00000608957 MT-ATP8P03928 68 aa6.52□□□□□ -1.37
LINC00539-204ENST00000608957 TPRXLQ17RH7 258 aa6.52□□□□□ -1.37
LINC00539-204ENST00000608957 IGKV3D-7A0A0C4DH55 119 aa6.5□□□□□ -1.37
LINC00539-204ENST00000608957 SIGMAR1Q99720 223 aa6.5□□□□□ -1.37
LINC00539-204ENST00000608957 LIMD2Q9BT23 127 aa6.5□□□□□ -1.37
LINC00539-204ENST00000608957 BPY2O14599 106 aa6.49□□□□□ -1.37
LINC00539-204ENST00000608957 SPINK1P00995 79 aa6.49□□□□□ -1.37
LINC00539-204ENST00000608957 CXCL6P80162 114 aa6.49□□□□□ -1.37
LINC00539-204ENST00000608957 Q5XG85 94 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms