RNA–Protein interactions for RNA: ENST00000600628.2

SSBP4-208, Transcript of single stranded DNA binding protein 4, human

TSL 3

Gene SSBP4, Length 550 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SSBP4-208	ENST00000600628	RAB37	Q96AX2	223 aa		4.98	□□□□□ -1.61
SSBP4-208	ENST00000600628	SPCS1	Q9Y6A9	102 aa		4.98	□□□□□ -1.61
SSBP4-208	ENST00000600628	IGLV7-46	A0A075B6I9	117 aa		4.97	□□□□□ -1.61
SSBP4-208	ENST00000600628	MOBP	Q13875	183 aa		4.97	□□□□□ -1.61
SSBP4-208	ENST00000600628	SMIM29	Q86T20	159 aa		4.97	□□□□□ -1.61
SSBP4-208	ENST00000600628		Q8N377	158 aa		4.97	□□□□□ -1.61
SSBP4-208	ENST00000600628	FP248	Q71RG6	208 aa	Predicted RBP	4.96	□□□□□ -1.62
SSBP4-208	ENST00000600628	IGLV9-49	A0A0B4J1Y8	123 aa		4.95	□□□□□ -1.62
SSBP4-208	ENST00000600628	TEX49	A0A1B0GTD5	131 aa		4.94	□□□□□ -1.62
SSBP4-208	ENST00000600628		F8W1H4	67 aa		4.94	□□□□□ -1.62
SSBP4-208	ENST00000600628	KRTAP13-3	Q3SY46	172 aa		4.94	□□□□□ -1.62
SSBP4-208	ENST00000600628	OCIAD2	Q56VL3	154 aa		4.94	□□□□□ -1.62
SSBP4-208	ENST00000600628	LINC00575	Q6W349	94 aa		4.94	□□□□□ -1.62
SSBP4-208	ENST00000600628	CDIP1	Q9H305	208 aa		4.93	□□□□□ -1.62
SSBP4-208	ENST00000600628	TRBV20-1	A0A075B6N2	111 aa		4.92	□□□□□ -1.62
SSBP4-208	ENST00000600628		J3QR89	54 aa		4.92	□□□□□ -1.62
SSBP4-208	ENST00000600628		K7ERJ3	54 aa		4.92	□□□□□ -1.62
SSBP4-208	ENST00000600628	CFC1B	P0CG36	223 aa		4.92	□□□□□ -1.62
SSBP4-208	ENST00000600628	CFC1	P0CG37	223 aa		4.92	□□□□□ -1.62
SSBP4-208	ENST00000600628	CD164	Q04900	197 aa		4.92	□□□□□ -1.62
SSBP4-208	ENST00000600628		Q5XG85	94 aa		4.92	□□□□□ -1.62
SSBP4-208	ENST00000600628	SLC25A20	O43772	301 aa		4.91	□□□□□ -1.62
SSBP4-208	ENST00000600628	C9orf153	Q5TBE3	101 aa		4.91	□□□□□ -1.62
SSBP4-208	ENST00000600628	LAMTOR3	Q9UHA4	124 aa		4.91	□□□□□ -1.62
SSBP4-208	ENST00000600628	PRO1854	Q9UHT4	67 aa		4.91	□□□□□ -1.62
SSBP4-208	ENST00000600628	IGLV8-61	A0A075B6I0	122 aa		4.9	□□□□□ -1.63
SSBP4-208	ENST00000600628		A0A0B4J2C4	111 aa		4.9	□□□□□ -1.63
SSBP4-208	ENST00000600628	NAA38	Q9BRA0	125 aa	Known RBP	4.9	□□□□□ -1.63
SSBP4-208	ENST00000600628	VPS25	Q9BRG1	176 aa		4.89	□□□□□ -1.63
SSBP4-208	ENST00000600628	FAT4	Q6V0I7	4981 aa		4.89	□□□□□ -1.63
SSBP4-208	ENST00000600628		Q1RN00	199 aa		4.88	□□□□□ -1.63
SSBP4-208	ENST00000600628	DEFB105A	Q8NG35	78 aa		4.88	□□□□□ -1.63
SSBP4-208	ENST00000600628	hADV29S1	A0JD25	119 aa		4.87	□□□□□ -1.63
SSBP4-208	ENST00000600628		H3BMG7	143 aa		4.87	□□□□□ -1.63
SSBP4-208	ENST00000600628	SCGB1C2	P0DMR2	95 aa		4.87	□□□□□ -1.63
SSBP4-208	ENST00000600628	UNQ6493/PRO21345	Q6UXR8	122 aa	Predicted RBP	4.87	□□□□□ -1.63
SSBP4-208	ENST00000600628		Q6ZQY7	126 aa		4.87	□□□□□ -1.63
SSBP4-208	ENST00000600628	PPDPFL	Q8WWR9	84 aa		4.87	□□□□□ -1.63
SSBP4-208	ENST00000600628		A0A0U1RQV1	116 aa		4.86	□□□□□ -1.63
SSBP4-208	ENST00000600628	COX6C	P09669	75 aa		4.86	□□□□□ -1.63
SSBP4-208	ENST00000600628	PSMB2	P49721	201 aa		4.86	□□□□□ -1.63
SSBP4-208	ENST00000600628	ASB16-AS1	Q495Z4	193 aa		4.85	□□□□□ -1.63
SSBP4-208	ENST00000600628	XP32	Q5T750	250 aa		4.85	□□□□□ -1.63
SSBP4-208	ENST00000600628	FAM218A	Q96MZ4	157 aa		4.85	□□□□□ -1.63
SSBP4-208	ENST00000600628	LIMD2	Q9BT23	127 aa		4.85	□□□□□ -1.63
SSBP4-208	ENST00000600628		A0A0G2JQZ4	141 aa		4.84	□□□□□ -1.63
SSBP4-208	ENST00000600628	ATXN8	Q156A1	80 aa		4.84	□□□□□ -1.63
SSBP4-208	ENST00000600628	HRCT1	Q6UXD1	115 aa		4.84	□□□□□ -1.63
SSBP4-208	ENST00000600628	PRO0461	Q9UI25	63 aa		4.84	□□□□□ -1.63
SSBP4-208	ENST00000600628		A0A1B0GX51	115 aa		4.83	□□□□□ -1.64
SSBP4-208	ENST00000600628		H0YGX0	51 aa		4.83	□□□□□ -1.64
SSBP4-208	ENST00000600628		H7C2G1	150 aa		4.83	□□□□□ -1.64
SSBP4-208	ENST00000600628	C1orf195	Q5TG92	126 aa		4.83	□□□□□ -1.64
SSBP4-208	ENST00000600628	TCL1B	O95988	128 aa		4.82	□□□□□ -1.64
SSBP4-208	ENST00000600628	ETDB	Q3ZM63	59 aa		4.82	□□□□□ -1.64
SSBP4-208	ENST00000600628		Q6JHZ5	121 aa		4.82	□□□□□ -1.64
SSBP4-208	ENST00000600628	TEN1	Q86WV5	123 aa		4.82	□□□□□ -1.64
SSBP4-208	ENST00000600628	PCP4	P48539	62 aa		4.81	□□□□□ -1.64
SSBP4-208	ENST00000600628	LCE2A	Q5TA79	106 aa	Predicted RBP	4.81	□□□□□ -1.64
SSBP4-208	ENST00000600628	IGFL1	Q6UW32	110 aa		4.81	□□□□□ -1.64
SSBP4-208	ENST00000600628	KRTAP4-1	Q9BYQ7	146 aa		4.81	□□□□□ -1.64
SSBP4-208	ENST00000600628	TRIAP1	O43715	76 aa		4.8	□□□□□ -1.64
SSBP4-208	ENST00000600628	SEC61B	P60468	96 aa	Known RBP	4.8	□□□□□ -1.64
SSBP4-208	ENST00000600628		Q6Q795	121 aa		4.8	□□□□□ -1.64
SSBP4-208	ENST00000600628	CLEC2B	Q92478	149 aa		4.8	□□□□□ -1.64
SSBP4-208	ENST00000600628	SCGB1A1	P11684	91 aa		4.79	□□□□□ -1.64
SSBP4-208	ENST00000600628	TRBV7-7	A0A0K0K1E9	115 aa		4.78	□□□□□ -1.64
SSBP4-208	ENST00000600628		C9JAW5	83 aa		4.78	□□□□□ -1.64
SSBP4-208	ENST00000600628		H3BT86	120 aa		4.78	□□□□□ -1.64
SSBP4-208	ENST00000600628	ANKRD29	Q8N6D5	301 aa		4.78	□□□□□ -1.64
SSBP4-208	ENST00000600628	SIGMAR1	Q99720	223 aa		4.78	□□□□□ -1.64
SSBP4-208	ENST00000600628		F8WEM9	126 aa		4.77	□□□□□ -1.65
SSBP4-208	ENST00000600628	SMCP	P49901	116 aa	Predicted RBP	4.77	□□□□□ -1.65
SSBP4-208	ENST00000600628	LST1	O00453	97 aa		4.76	□□□□□ -1.65
SSBP4-208	ENST00000600628	NDUFV3	P56181	108 aa	Known RBP	4.76	□□□□□ -1.65
SSBP4-208	ENST00000600628	MTURN	Q8N3F0	131 aa		4.76	□□□□□ -1.65
SSBP4-208	ENST00000600628	SNCG	O76070	127 aa		4.75	□□□□□ -1.65
SSBP4-208	ENST00000600628	TRAC	P01848	142 aa		4.75	□□□□□ -1.65
SSBP4-208	ENST00000600628	C9orf92	A6NGG3	77 aa		4.74	□□□□□ -1.65
SSBP4-208	ENST00000600628	KRTAP19-2	Q3LHN2	52 aa		4.74	□□□□□ -1.65
SSBP4-208	ENST00000600628		Q96NJ1	140 aa		4.73	□□□□□ -1.65
SSBP4-208	ENST00000600628	FAM240A	A0A1B0GVK7	77 aa		4.72	□□□□□ -1.65
SSBP4-208	ENST00000600628		A0A1W2PNM2	257 aa		4.72	□□□□□ -1.65
SSBP4-208	ENST00000600628		H3BQ85	93 aa		4.72	□□□□□ -1.65
SSBP4-208	ENST00000600628	GHRH	P01286	108 aa		4.72	□□□□□ -1.65
SSBP4-208	ENST00000600628	ACYP1	P07311	99 aa		4.71	□□□□□ -1.66
SSBP4-208	ENST00000600628	LCE2C	Q5TA81	110 aa		4.71	□□□□□ -1.66
SSBP4-208	ENST00000600628	FLG	P20930	4061 aa	Predicted RBP	4.71	□□□□□ -1.66
SSBP4-208	ENST00000600628	DNAL4	O96015	105 aa		4.7	□□□□□ -1.66
SSBP4-208	ENST00000600628	RPL37	P61927	97 aa	Known RBP	4.7	□□□□□ -1.66
SSBP4-208	ENST00000600628	PCOTH	Q58A44	107 aa		4.7	□□□□□ -1.66
SSBP4-208	ENST00000600628	ORMDL1	Q9P0S3	153 aa		4.7	□□□□□ -1.66
SSBP4-208	ENST00000600628	TMEM256-PLSCR3	K7ERE1	68 aa		4.69	□□□□□ -1.66
SSBP4-208	ENST00000600628	TRBV7-4	A0A0J9YYF1	115 aa		4.68	□□□□□ -1.66
SSBP4-208	ENST00000600628	BAALC-AS2	P0C853	105 aa		4.68	□□□□□ -1.66
SSBP4-208	ENST00000600628	C21orf62-AS1	Q17RA5	79 aa		4.68	□□□□□ -1.66
SSBP4-208	ENST00000600628	SS18L2	Q9UHA2	77 aa		4.68	□□□□□ -1.66
SSBP4-208	ENST00000600628		A0A087WSZ3	146 aa		4.67	□□□□□ -1.66
SSBP4-208	ENST00000600628		A0A1B0GV72	72 aa		4.66	□□□□□ -1.66
SSBP4-208	ENST00000600628		Q75L30	129 aa		4.66	□□□□□ -1.66

Retrieved 100 of 20,778 RNA–protein pairs in 827 ms