RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 KRTAP10-6P60371 365 aaPredicted RBP9.33□□□□□ -0.92
SHKBP1-223ENST00000600552 LINC00575Q6W349 94 aa9.32□□□□□ -0.92
SHKBP1-223ENST00000600552 Q6ZQY7 126 aa9.32□□□□□ -0.92
SHKBP1-223ENST00000600552 hADV29S1A0JD25 119 aa9.3□□□□□ -0.92
SHKBP1-223ENST00000600552 LORP23490 312 aaPredicted RBP9.3□□□□□ -0.92
SHKBP1-223ENST00000600552 Q6Q795 121 aa9.3□□□□□ -0.92
SHKBP1-223ENST00000600552 SNRPEP62304 92 aaKnown RBP9.27□□□□□ -0.93
SHKBP1-223ENST00000600552 Q6JHZ5 121 aa9.27□□□□□ -0.93
SHKBP1-223ENST00000600552 IGFL1Q6UW32 110 aa9.27□□□□□ -0.93
SHKBP1-223ENST00000600552 OBSCN-AS1Q96MR7 158 aa9.27□□□□□ -0.93
SHKBP1-223ENST00000600552 C12orf57Q99622 126 aa9.27□□□□□ -0.93
SHKBP1-223ENST00000600552 TRBV7-7A0A0K0K1E9 115 aa9.26□□□□□ -0.93
SHKBP1-223ENST00000600552 HSBP1L1C9JCN9 74 aa9.26□□□□□ -0.93
SHKBP1-223ENST00000600552 OCIAD2Q56VL3 154 aa9.26□□□□□ -0.93
SHKBP1-223ENST00000600552 CLEC2BQ92478 149 aa9.26□□□□□ -0.93
SHKBP1-223ENST00000600552 S100A2P29034 98 aa9.23□□□□□ -0.93
SHKBP1-223ENST00000600552 ATP11AUNQ6ZP68 121 aa9.23□□□□□ -0.93
SHKBP1-223ENST00000600552 SNHG12Q9BXW3 62 aa9.23□□□□□ -0.93
SHKBP1-223ENST00000600552 H3BUT2 72 aa9.22□□□□□ -0.93
SHKBP1-223ENST00000600552 FLGP20930 4061 aaPredicted RBP9.21□□□□□ -0.93
SHKBP1-223ENST00000600552 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.2□□□□□ -0.94
SHKBP1-223ENST00000600552 LST1O00453 97 aa9.19□□□□□ -0.94
SHKBP1-223ENST00000600552 HIST3H2BBQ8N257 126 aa9.19□□□□□ -0.94
SHKBP1-223ENST00000600552 HIST1H4GQ99525 98 aa9.19□□□□□ -0.94
SHKBP1-223ENST00000600552 HIST1H2BLQ99880 126 aa9.19□□□□□ -0.94
SHKBP1-223ENST00000600552 Q96NJ1 140 aa9.18□□□□□ -0.94
SHKBP1-223ENST00000600552 BVES-AS1Q5T3Y7 98 aa9.16□□□□□ -0.94
SHKBP1-223ENST00000600552 Q75L30 129 aa9.16□□□□□ -0.94
SHKBP1-223ENST00000600552 SCGB1D1O95968 90 aa9.14□□□□□ -0.95
SHKBP1-223ENST00000600552 PPDPFLQ8WWR9 84 aa9.12□□□□□ -0.95
SHKBP1-223ENST00000600552 S100A6P06703 90 aa9.11□□□□□ -0.95
SHKBP1-223ENST00000600552 RAB37Q96AX2 223 aa9.1□□□□□ -0.95
SHKBP1-223ENST00000600552 SNCGO76070 127 aa9.08□□□□□ -0.96
SHKBP1-223ENST00000600552 SS18L2Q9UHA2 77 aa9.08□□□□□ -0.96
SHKBP1-223ENST00000600552 CFC1P0CG37 223 aa9.06□□□□□ -0.96
SHKBP1-223ENST00000600552 COX8AP10176 69 aa9.06□□□□□ -0.96
SHKBP1-223ENST00000600552 NDUFV3P56181 108 aaKnown RBP9.06□□□□□ -0.96
SHKBP1-223ENST00000600552 A0A087WSZ3 146 aa9.05□□□□□ -0.96
SHKBP1-223ENST00000600552 DSCR10P59022 87 aa9.04□□□□□ -0.96
SHKBP1-223ENST00000600552 TEN1Q86WV5 123 aa9.04□□□□□ -0.96
SHKBP1-223ENST00000600552 C14orf144Q96I85 54 aa9.04□□□□□ -0.96
SHKBP1-223ENST00000600552 FAM218AQ96MZ4 157 aa9.04□□□□□ -0.96
SHKBP1-223ENST00000600552 FABP2P12104 132 aa9.03□□□□□ -0.96
SHKBP1-223ENST00000600552 TRBV20-1A0A075B6N2 111 aa9.02□□□□□ -0.97
SHKBP1-223ENST00000600552 H0YGX0 51 aa9.02□□□□□ -0.97
SHKBP1-223ENST00000600552 H3BMG7 143 aa9.02□□□□□ -0.97
SHKBP1-223ENST00000600552 A8MUU9 505 aa9□□□□□ -0.97
SHKBP1-223ENST00000600552 C20orf166-AS1Q96NR2 134 aa9□□□□□ -0.97
SHKBP1-223ENST00000600552 SIGMAR1Q99720 223 aa9□□□□□ -0.97
SHKBP1-223ENST00000600552 TMA7Q9Y2S6 64 aaKnown RBP9□□□□□ -0.97
SHKBP1-223ENST00000600552 DLEU1O43261 78 aa8.99□□□□□ -0.97
SHKBP1-223ENST00000600552 A0A1B0GV72 72 aa8.98□□□□□ -0.97
SHKBP1-223ENST00000600552 PAM16Q9Y3D7 125 aa8.98□□□□□ -0.97
SHKBP1-223ENST00000600552 A0A0B4J2C4 111 aa8.96□□□□□ -0.98
SHKBP1-223ENST00000600552 SPATA45Q537H7 98 aa8.96□□□□□ -0.98
SHKBP1-223ENST00000600552 FAM236DA0A1B0GTK5 79 aa8.95□□□□□ -0.98
SHKBP1-223ENST00000600552 FAM236CP0DP71 79 aa8.95□□□□□ -0.98
SHKBP1-223ENST00000600552 A0A1W2PNM2 257 aa8.93□□□□□ -0.98
SHKBP1-223ENST00000600552 HIGD1BQ9P298 99 aa8.93□□□□□ -0.98
SHKBP1-223ENST00000600552 GHRHP01286 108 aa8.92□□□□□ -0.98
SHKBP1-223ENST00000600552 IGKV4-1P06312 121 aa8.92□□□□□ -0.98
SHKBP1-223ENST00000600552 LINC00313P59037 77 aa8.92□□□□□ -0.98
SHKBP1-223ENST00000600552 PRO1854Q9UHT4 67 aa8.92□□□□□ -0.98
SHKBP1-223ENST00000600552 C2orf91Q6ZV80 131 aa8.91□□□□□ -0.98
SHKBP1-223ENST00000600552 CEND1Q8N111 149 aa8.91□□□□□ -0.98
SHKBP1-223ENST00000600552 KRTAP9-8Q9BYQ0 159 aa8.91□□□□□ -0.98
SHKBP1-223ENST00000600552 DEFB116Q30KQ4 102 aa8.9□□□□□ -0.98
SHKBP1-223ENST00000600552 ANKRD29Q8N6D5 301 aa8.9□□□□□ -0.98
SHKBP1-223ENST00000600552 VAMP8Q9BV40 100 aa8.9□□□□□ -0.98
SHKBP1-223ENST00000600552 USH2AO75445 5202 aa8.9□□□□□ -0.99
SHKBP1-223ENST00000600552 TMEM238LA0A1B0GVL6 79 aa8.88□□□□□ -0.99
SHKBP1-223ENST00000600552 A0A1B0GX51 115 aa8.88□□□□□ -0.99
SHKBP1-223ENST00000600552 A6NJY4 79 aa8.88□□□□□ -0.99
SHKBP1-223ENST00000600552 KRTAP16-1A8MUX0 517 aa8.88□□□□□ -0.99
SHKBP1-223ENST00000600552 TRIAP1O43715 76 aa8.88□□□□□ -0.99
SHKBP1-223ENST00000600552 DNAL4O96015 105 aa8.86□□□□□ -0.99
SHKBP1-223ENST00000600552 FXYD2P54710 66 aa8.86□□□□□ -0.99
SHKBP1-223ENST00000600552 NOTCH2NLQ7Z3S9 236 aa8.86□□□□□ -0.99
SHKBP1-223ENST00000600552 PSMB2P49721 201 aa8.85□□□□□ -0.99
SHKBP1-223ENST00000600552 ORMDL1Q9P0S3 153 aa8.84□□□□□ -0.99
SHKBP1-223ENST00000600552 IGHV6-1A0A0B4J1U7 121 aa8.83□□□□□ -1
SHKBP1-223ENST00000600552 RBM12B-AS1Q9P1G2 102 aa8.82□□□□□ -1
SHKBP1-223ENST00000600552 SSPOA2VEC9 5147 aa8.82□□□□□ -1
SHKBP1-223ENST00000600552 TRBV7-4A0A0J9YYF1 115 aa8.81□□□□□ -1
SHKBP1-223ENST00000600552 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.8□□□□□ -1
SHKBP1-223ENST00000600552 K7ERJ3 54 aa8.8□□□□□ -1
SHKBP1-223ENST00000600552 CCKP06307 115 aa8.8□□□□□ -1
SHKBP1-223ENST00000600552 TRACP01848 142 aa8.79□□□□□ -1
SHKBP1-223ENST00000600552 MT2AP02795 61 aa8.79□□□□□ -1
SHKBP1-223ENST00000600552 VPS25Q9BRG1 176 aa8.79□□□□□ -1
SHKBP1-223ENST00000600552 KRTAP9-7A8MTY7 169 aa8.77□□□□□ -1.01
SHKBP1-223ENST00000600552 HRES1P13985 223 aa8.77□□□□□ -1.01
SHKBP1-223ENST00000600552 LINC00472Q9H8W2 130 aa8.77□□□□□ -1.01
SHKBP1-223ENST00000600552 TMEM256-PLSCR3K7ERE1 68 aa8.76□□□□□ -1.01
SHKBP1-223ENST00000600552 H3BQ85 93 aa8.75□□□□□ -1.01
SHKBP1-223ENST00000600552 COX6CP09669 75 aa8.75□□□□□ -1.01
SHKBP1-223ENST00000600552 KRTAP10-10P60014 251 aa8.75□□□□□ -1.01
SHKBP1-223ENST00000600552 MT1FP04733 61 aa8.73□□□□□ -1.01
SHKBP1-223ENST00000600552 HSD52Q0P140 79 aa8.72□□□□□ -1.01
SHKBP1-223ENST00000600552 MPLKIPQ8TAP9 179 aa8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 122.8 ms