RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 CBY1Q9Y3M2 126 aa4.54□□□□□ -1.68
SHKBP1-220ENST00000599716 ELOF1P60002 83 aaKnown RBP4.53□□□□□ -1.68
SHKBP1-220ENST00000599716 SLC25A34Q6PIV7 304 aa4.53□□□□□ -1.68
SHKBP1-220ENST00000599716 PRO1933Q9H354 126 aa4.53□□□□□ -1.68
SHKBP1-220ENST00000599716 SPANXCQ9NY87 97 aa4.53□□□□□ -1.68
SHKBP1-220ENST00000599716 E9PLD3 99 aa4.52□□□□□ -1.69
SHKBP1-220ENST00000599716 KRTAP9-8Q9BYQ0 159 aa4.52□□□□□ -1.69
SHKBP1-220ENST00000599716 TEX49A0A1B0GTD5 131 aa4.51□□□□□ -1.69
SHKBP1-220ENST00000599716 CD164Q04900 197 aa4.51□□□□□ -1.69
SHKBP1-220ENST00000599716 KMT2DO14686 5537 aa4.51□□□□□ -1.69
SHKBP1-220ENST00000599716 SPANXDQ9BXN6 97 aa4.5□□□□□ -1.69
SHKBP1-220ENST00000599716 HSPB8Q9UJY1 196 aa4.5□□□□□ -1.69
SHKBP1-220ENST00000599716 CFC1P0CG37 223 aa4.49□□□□□ -1.69
SHKBP1-220ENST00000599716 Q5XG85 94 aa4.49□□□□□ -1.69
SHKBP1-220ENST00000599716 ZNF815PA8K554 130 aa4.48□□□□□ -1.69
SHKBP1-220ENST00000599716 C14orf144Q96I85 54 aa4.48□□□□□ -1.69
SHKBP1-220ENST00000599716 MDN1Q9NU22 5596 aa4.48□□□□□ -1.69
SHKBP1-220ENST00000599716 PYY3Q5JQD4 70 aa4.47□□□□□ -1.69
SHKBP1-220ENST00000599716 PCP2Q8IVA1 136 aa4.47□□□□□ -1.69
SHKBP1-220ENST00000599716 OBSCN-AS1Q96MR7 158 aa4.47□□□□□ -1.69
SHKBP1-220ENST00000599716 IGLV5-48A0A075B6I7 105 aa4.46□□□□□ -1.7
SHKBP1-220ENST00000599716 A0A1B0GV90 55 aa4.46□□□□□ -1.7
SHKBP1-220ENST00000599716 A6NDN8 102 aa4.46□□□□□ -1.7
SHKBP1-220ENST00000599716 SYS1-DBNDD2H3BUS1 97 aa4.46□□□□□ -1.7
SHKBP1-220ENST00000599716 TIMM17BO60830 172 aa4.46□□□□□ -1.7
SHKBP1-220ENST00000599716 ANKRD39Q53RE8 183 aa4.45□□□□□ -1.7
SHKBP1-220ENST00000599716 HIST3H2BBQ8N257 126 aa4.45□□□□□ -1.7
SHKBP1-220ENST00000599716 LINC00846Q9NV44 126 aa4.45□□□□□ -1.7
SHKBP1-220ENST00000599716 A0A1B0GWB2 263 aa4.44□□□□□ -1.7
SHKBP1-220ENST00000599716 M0R143 59 aa4.43□□□□□ -1.7
SHKBP1-220ENST00000599716 TCL1BO95988 128 aa4.43□□□□□ -1.7
SHKBP1-220ENST00000599716 COA6Q5JTJ3 125 aaKnown RBP4.43□□□□□ -1.7
SHKBP1-220ENST00000599716 HIST1H2BKO60814 126 aa4.42□□□□□ -1.7
SHKBP1-220ENST00000599716 HIST1H2BJP06899 126 aa4.42□□□□□ -1.7
SHKBP1-220ENST00000599716 HIST1H2BOP23527 126 aa4.42□□□□□ -1.7
SHKBP1-220ENST00000599716 HIST1H2BBP33778 126 aa4.42□□□□□ -1.7
SHKBP1-220ENST00000599716 HIST1H2BDP58876 126 aa4.42□□□□□ -1.7
SHKBP1-220ENST00000599716 HIST1H2BCP62807 126 aa4.42□□□□□ -1.7
SHKBP1-220ENST00000599716 HIST2H2BEQ16778 126 aa4.42□□□□□ -1.7
SHKBP1-220ENST00000599716 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.42□□□□□ -1.7
SHKBP1-220ENST00000599716 LINC01545Q5VT33 79 aa4.42□□□□□ -1.7
SHKBP1-220ENST00000599716 SCGB1D4Q6XE38 83 aa4.42□□□□□ -1.7
SHKBP1-220ENST00000599716 ATP11AUNQ6ZP68 121 aa4.42□□□□□ -1.7
SHKBP1-220ENST00000599716 MUSTN1Q8IVN3 82 aa4.42□□□□□ -1.7
SHKBP1-220ENST00000599716 SMIM11BQ8TCY0 68 aa4.42□□□□□ -1.7
SHKBP1-220ENST00000599716 HIST1H2BHQ93079 126 aa4.42□□□□□ -1.7
SHKBP1-220ENST00000599716 HIST1H2BNQ99877 126 aa4.42□□□□□ -1.7
SHKBP1-220ENST00000599716 HIST1H2BMQ99879 126 aa4.42□□□□□ -1.7
SHKBP1-220ENST00000599716 TRBV7-6A0A0J9YX20 115 aa4.41□□□□□ -1.7
SHKBP1-220ENST00000599716 DLEU1O43261 78 aa4.41□□□□□ -1.7
SHKBP1-220ENST00000599716 IGFL1Q6UW32 110 aa4.41□□□□□ -1.7
SHKBP1-220ENST00000599716 MT2AP02795 61 aa4.4□□□□□ -1.71
SHKBP1-220ENST00000599716 C3orf79P0CE67 100 aa4.4□□□□□ -1.71
SHKBP1-220ENST00000599716 Q75L30 129 aa4.4□□□□□ -1.71
SHKBP1-220ENST00000599716 ATOH7Q8N100 152 aa4.4□□□□□ -1.71
SHKBP1-220ENST00000599716 Q96NJ1 140 aa4.4□□□□□ -1.71
SHKBP1-220ENST00000599716 HIST1H2BLQ99880 126 aa4.4□□□□□ -1.71
SHKBP1-220ENST00000599716 TRBV7-7A0A0K0K1E9 115 aa4.39□□□□□ -1.71
SHKBP1-220ENST00000599716 F8WEM9 126 aa4.39□□□□□ -1.71
SHKBP1-220ENST00000599716 PCP4P48539 62 aa4.39□□□□□ -1.71
SHKBP1-220ENST00000599716 Q6ZQY7 126 aa4.39□□□□□ -1.71
SHKBP1-220ENST00000599716 MT1FP04733 61 aa4.38□□□□□ -1.71
SHKBP1-220ENST00000599716 KRTDAPP60985 99 aa4.38□□□□□ -1.71
SHKBP1-220ENST00000599716 PET117Q6UWS5 81 aa4.38□□□□□ -1.71
SHKBP1-220ENST00000599716 C20orf202A1L168 122 aa4.37□□□□□ -1.71
SHKBP1-220ENST00000599716 H3BUT2 72 aa4.37□□□□□ -1.71
SHKBP1-220ENST00000599716 CLEC2BQ92478 149 aa4.37□□□□□ -1.71
SHKBP1-220ENST00000599716 KRTAP19-6Q3LI70 58 aa4.36□□□□□ -1.71
SHKBP1-220ENST00000599716 COL5A1-AS1Q5SY13 56 aa4.36□□□□□ -1.71
SHKBP1-220ENST00000599716 LINC00575Q6W349 94 aa4.36□□□□□ -1.71
SHKBP1-220ENST00000599716 SNHG12Q9BXW3 62 aa4.36□□□□□ -1.71
SHKBP1-220ENST00000599716 NHP2Q9NX24 153 aaKnown RBP4.36□□□□□ -1.71
SHKBP1-220ENST00000599716 A4D1N5 150 aa4.35□□□□□ -1.71
SHKBP1-220ENST00000599716 IFITM1P13164 125 aa4.35□□□□□ -1.71
SHKBP1-220ENST00000599716 OCIAD2Q56VL3 154 aa4.35□□□□□ -1.71
SHKBP1-220ENST00000599716 TRAV13-2A0A0B4J235 113 aa4.34□□□□□ -1.71
SHKBP1-220ENST00000599716 hADV29S1A0JD25 119 aa4.34□□□□□ -1.71
SHKBP1-220ENST00000599716 KRTAP16-1A8MUX0 517 aa4.34□□□□□ -1.71
SHKBP1-220ENST00000599716 LST1O00453 97 aa4.34□□□□□ -1.71
SHKBP1-220ENST00000599716 Q6JHZ5 121 aa4.34□□□□□ -1.71
SHKBP1-220ENST00000599716 SCGB1D1O95968 90 aa4.33□□□□□ -1.72
SHKBP1-220ENST00000599716 DSCR10P59022 87 aa4.33□□□□□ -1.72
SHKBP1-220ENST00000599716 C20orf166-AS1Q96NR2 134 aa4.33□□□□□ -1.72
SHKBP1-220ENST00000599716 VAMP8Q9BV40 100 aa4.33□□□□□ -1.72
SHKBP1-220ENST00000599716 TRBV20-1A0A075B6N2 111 aa4.32□□□□□ -1.72
SHKBP1-220ENST00000599716 FAM236DA0A1B0GTK5 79 aa4.32□□□□□ -1.72
SHKBP1-220ENST00000599716 A8MUU9 505 aa4.32□□□□□ -1.72
SHKBP1-220ENST00000599716 FAM236CP0DP71 79 aa4.32□□□□□ -1.72
SHKBP1-220ENST00000599716 C21orf62-AS1Q17RA5 79 aa4.32□□□□□ -1.72
SHKBP1-220ENST00000599716 COPS9Q8WXC6 57 aa4.32□□□□□ -1.72
SHKBP1-220ENST00000599716 KRTAP10-10P60014 251 aa4.31□□□□□ -1.72
SHKBP1-220ENST00000599716 VAMP3Q15836 100 aa4.31□□□□□ -1.72
SHKBP1-220ENST00000599716 Q6ZVH6 145 aa4.31□□□□□ -1.72
SHKBP1-220ENST00000599716 HSBP1L1C9JCN9 74 aa4.3□□□□□ -1.72
SHKBP1-220ENST00000599716 UQCR10Q9UDW1 63 aa4.3□□□□□ -1.72
SHKBP1-220ENST00000599716 KRTAP2-3P0C7H8 128 aa4.29□□□□□ -1.72
SHKBP1-220ENST00000599716 SVIPQ8NHG7 77 aa4.29□□□□□ -1.72
SHKBP1-220ENST00000599716 KRTAP2-4Q9BYR9 128 aa4.29□□□□□ -1.72
SHKBP1-220ENST00000599716 A0A087WSZ3 146 aa4.28□□□□□ -1.72
SHKBP1-220ENST00000599716 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 121.4 ms