RNA–Protein interactions for RNA: ENST00000586407.1

LIG3-208, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 815 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-208ENST00000586407 VAMP8Q9BV40 100 aa15.4■□□□□ 0.06
LIG3-208ENST00000586407 F8WEM9 126 aa15.38■□□□□ 0.05
LIG3-208ENST00000586407 CFC1BP0CG36 223 aa15.38■□□□□ 0.05
LIG3-208ENST00000586407 CFC1P0CG37 223 aa15.38■□□□□ 0.05
LIG3-208ENST00000586407 C1orf195Q5TG92 126 aa15.37■□□□□ 0.05
LIG3-208ENST00000586407 Q5XG85 94 aa15.37■□□□□ 0.05
LIG3-208ENST00000586407 HIGD1BQ9P298 99 aa15.36■□□□□ 0.05
LIG3-208ENST00000586407 BVES-AS1Q5T3Y7 98 aa15.34■□□□□ 0.05
LIG3-208ENST00000586407 RAB37Q96AX2 223 aa15.33■□□□□ 0.04
LIG3-208ENST00000586407 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP15.32■□□□□ 0.04
LIG3-208ENST00000586407 IGFL1Q6UW32 110 aa15.28■□□□□ 0.04
LIG3-208ENST00000586407 A0A0B4J2C4 111 aa15.27■□□□□ 0.04
LIG3-208ENST00000586407 IGLV8-61A0A075B6I0 122 aa15.26■□□□□ 0.03
LIG3-208ENST00000586407 OCIAD2Q56VL3 154 aa15.26■□□□□ 0.03
LIG3-208ENST00000586407 PCOTHQ58A44 107 aa15.25■□□□□ 0.03
LIG3-208ENST00000586407 Q6JHZ5 121 aa15.24■□□□□ 0.03
LIG3-208ENST00000586407 CEND1Q8N111 149 aa15.24■□□□□ 0.03
LIG3-208ENST00000586407 CLEC2BQ92478 149 aa15.24■□□□□ 0.03
LIG3-208ENST00000586407 FAM218AQ96MZ4 157 aa15.24■□□□□ 0.03
LIG3-208ENST00000586407 H3BUT2 72 aa15.23■□□□□ 0.03
LIG3-208ENST00000586407 TCL1BO95988 128 aa15.23■□□□□ 0.03
LIG3-208ENST00000586407 SNHG12Q9BXW3 62 aa15.22■□□□□ 0.03
LIG3-208ENST00000586407 FXYD2P54710 66 aa15.21■□□□□ 0.03
LIG3-208ENST00000586407 PYY3Q5JQD4 70 aa15.21■□□□□ 0.03
LIG3-208ENST00000586407 TRBV7-7A0A0K0K1E9 115 aa15.2■□□□□ 0.02
LIG3-208ENST00000586407 PPDPFLQ8WWR9 84 aa15.19■□□□□ 0.02
LIG3-208ENST00000586407 TMA7Q9Y2S6 64 aaKnown RBP15.17■□□□□ 0.02
LIG3-208ENST00000586407 PRO1854Q9UHT4 67 aa15.16■□□□□ 0.02
LIG3-208ENST00000586407 H0YGX0 51 aa15.15■□□□□ 0.02
LIG3-208ENST00000586407 TMEM238LA0A1B0GVL6 79 aa15.12■□□□□ 0.01
LIG3-208ENST00000586407 A6NJY4 79 aa15.12■□□□□ 0.01
LIG3-208ENST00000586407 TRIAP1O43715 76 aa15.08■□□□□ 0
LIG3-208ENST00000586407 K7ERJ3 54 aa15.07■□□□□ 0
LIG3-208ENST00000586407 SNCGO76070 127 aa15.07■□□□□ 0
LIG3-208ENST00000586407 NDUFV3P56181 108 aaKnown RBP15.07■□□□□ 0
LIG3-208ENST00000586407 RPL37P61927 97 aaKnown RBP15.05■□□□□ -0
LIG3-208ENST00000586407 HSD52Q0P140 79 aa15.05■□□□□ -0
LIG3-208ENST00000586407 KRTAP9-2Q9BYQ4 174 aa15.05■□□□□ -0
LIG3-208ENST00000586407 LCE2CQ5TA81 110 aa15.03■□□□□ -0
LIG3-208ENST00000586407 KRTAP19-2Q3LHN2 52 aa15.02■□□□□ -0
LIG3-208ENST00000586407 FABP2P12104 132 aa15.01□□□□□ -0.01
LIG3-208ENST00000586407 A0A1B0GX51 115 aa14.99□□□□□ -0.01
LIG3-208ENST00000586407 H3BMG7 143 aa14.97□□□□□ -0.01
LIG3-208ENST00000586407 LST1O00453 97 aa14.97□□□□□ -0.01
LIG3-208ENST00000586407 PSMB2P49721 201 aa14.95□□□□□ -0.02
LIG3-208ENST00000586407 Q6Q795 121 aa14.95□□□□□ -0.02
LIG3-208ENST00000586407 OBSCN-AS1Q96MR7 158 aa14.95□□□□□ -0.02
LIG3-208ENST00000586407 UQCR10Q9UDW1 63 aa14.94□□□□□ -0.02
LIG3-208ENST00000586407 TEN1Q86WV5 123 aa14.93□□□□□ -0.02
LIG3-208ENST00000586407 A0A1B0GV72 72 aa14.92□□□□□ -0.02
LIG3-208ENST00000586407 A0A087WSZ3 146 aa14.91□□□□□ -0.02
LIG3-208ENST00000586407 SS18L2Q9UHA2 77 aa14.9□□□□□ -0.02
LIG3-208ENST00000586407 DNAL4O96015 105 aa14.87□□□□□ -0.03
LIG3-208ENST00000586407 A0A1W2PNM2 257 aa14.86□□□□□ -0.03
LIG3-208ENST00000586407 GHRHP01286 108 aa14.86□□□□□ -0.03
LIG3-208ENST00000586407 ORMDL1Q9P0S3 153 aa14.85□□□□□ -0.03
LIG3-208ENST00000586407 MT1HP80294 61 aa14.83□□□□□ -0.04
LIG3-208ENST00000586407 Q96NJ1 140 aa14.83□□□□□ -0.04
LIG3-208ENST00000586407 COX6CP09669 75 aa14.8□□□□□ -0.04
LIG3-208ENST00000586407 Q75L30 129 aa14.77□□□□□ -0.05
LIG3-208ENST00000586407 ANKRD29Q8N6D5 301 aa14.77□□□□□ -0.05
LIG3-208ENST00000586407 TMEM256-PLSCR3K7ERE1 68 aa14.72□□□□□ -0.05
LIG3-208ENST00000586407 ATP11AUNQ6ZP68 121 aa14.72□□□□□ -0.05
LIG3-208ENST00000586407 SIGMAR1Q99720 223 aa14.72□□□□□ -0.05
LIG3-208ENST00000586407 SCGB1C2P0DMR2 95 aa14.71□□□□□ -0.05
LIG3-208ENST00000586407 H3BQ85 93 aa14.7□□□□□ -0.06
LIG3-208ENST00000586407 DSCR10P59022 87 aa14.7□□□□□ -0.06
LIG3-208ENST00000586407 COX6B2Q6YFQ2 88 aa14.68□□□□□ -0.06
LIG3-208ENST00000586407 TRBV7-4A0A0J9YYF1 115 aa14.67□□□□□ -0.06
LIG3-208ENST00000586407 TRACP01848 142 aa14.67□□□□□ -0.06
LIG3-208ENST00000586407 CCKP06307 115 aa14.65□□□□□ -0.06
LIG3-208ENST00000586407 UBE2V1Q13404 147 aa14.65□□□□□ -0.06
LIG3-208ENST00000586407 C20orf166-AS1Q96NR2 134 aa14.65□□□□□ -0.06
LIG3-208ENST00000586407 A8MUU9 505 aa14.63□□□□□ -0.07
LIG3-208ENST00000586407 IGKV4-1P06312 121 aa14.63□□□□□ -0.07
LIG3-208ENST00000586407 DEFB116Q30KQ4 102 aa14.63□□□□□ -0.07
LIG3-208ENST00000586407 NAA38Q9BRA0 125 aaKnown RBP14.61□□□□□ -0.07
LIG3-208ENST00000586407 VPS25Q9BRG1 176 aa14.59□□□□□ -0.07
LIG3-208ENST00000586407 LINC00472Q9H8W2 130 aa14.56□□□□□ -0.08
LIG3-208ENST00000586407 LCE2DQ5TA82 110 aaPredicted RBP14.55□□□□□ -0.08
LIG3-208ENST00000586407 M0R2T5 61 aa14.54□□□□□ -0.08
LIG3-208ENST00000586407 BAALC-AS2P0C853 105 aa14.54□□□□□ -0.08
LIG3-208ENST00000586407 NOTCH2NLQ7Z3S9 236 aa14.54□□□□□ -0.08
LIG3-208ENST00000586407 M0R143 59 aa14.53□□□□□ -0.08
LIG3-208ENST00000586407 KRTAP10-6P60371 365 aaPredicted RBP14.53□□□□□ -0.08
LIG3-208ENST00000586407 RBM3P98179 157 aaKnown RBP14.53□□□□□ -0.08
LIG3-208ENST00000586407 KRTAP9-6A0A140TA67 174 aa14.52□□□□□ -0.09
LIG3-208ENST00000586407 LINC00313P59037 77 aa14.52□□□□□ -0.09
LIG3-208ENST00000586407 KRTAP16-1A8MUX0 517 aa14.51□□□□□ -0.09
LIG3-208ENST00000586407 LORP23490 312 aaPredicted RBP14.51□□□□□ -0.09
LIG3-208ENST00000586407 FLGP20930 4061 aaPredicted RBP14.5□□□□□ -0.09
LIG3-208ENST00000586407 SMIM6P0DI80 62 aa14.49□□□□□ -0.09
LIG3-208ENST00000586407 DSCR8Q96T75 97 aa14.49□□□□□ -0.09
LIG3-208ENST00000586407 IGHV6-1A0A0B4J1U7 121 aa14.46□□□□□ -0.09
LIG3-208ENST00000586407 ATXN8Q156A1 80 aa14.43□□□□□ -0.1
LIG3-208ENST00000586407 C9JAW5 83 aa14.41□□□□□ -0.1
LIG3-208ENST00000586407 BATFQ16520 125 aa14.36□□□□□ -0.11
LIG3-208ENST00000586407 A0A1B0GVX0 72 aa14.35□□□□□ -0.11
LIG3-208ENST00000586407 Q6ZQT0 140 aa14.32□□□□□ -0.12
LIG3-208ENST00000586407 TSTD3H0UI37 97 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 176.2 ms