RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 UMAD1C9J7I0 102 aa-0.98□□□□□ -2.57
SMCHD1-209ENST00000583441 POLR1AO95602 1720 aaPredicted RBP-0.98□□□□□ -2.57
SMCHD1-209ENST00000583441 LYSTQ99698 3801 aa-0.98□□□□□ -2.57
SMCHD1-209ENST00000583441 RGPD3A6NKT7 1758 aaPredicted RBP-0.98□□□□□ -2.57
SMCHD1-209ENST00000583441 NBPF19A0A087WUL8 3843 aa-0.99□□□□□ -2.57
SMCHD1-209ENST00000583441 LCE6AA0A183 80 aa-0.99□□□□□ -2.57
SMCHD1-209ENST00000583441 PLXNC1O60486 1568 aa-1□□□□□ -2.57
SMCHD1-209ENST00000583441 FAT3Q8TDW7 4589 aa-1□□□□□ -2.57
SMCHD1-209ENST00000583441 LTN1O94822 1766 aa-1.01□□□□□ -2.57
SMCHD1-209ENST00000583441 ZZEF1O43149 2961 aa-1.01□□□□□ -2.57
SMCHD1-209ENST00000583441 LAMA2P24043 3122 aaKnown RBP-1.01□□□□□ -2.57
SMCHD1-209ENST00000583441 HMGA1P17096 107 aaKnown RBP-1.01□□□□□ -2.57
SMCHD1-209ENST00000583441 UACAQ9BZF9 1416 aa-1.01□□□□□ -2.57
SMCHD1-209ENST00000583441 CCDC88BA6NC98 1476 aa-1.01□□□□□ -2.57
SMCHD1-209ENST00000583441 DMXL1Q9Y485 3027 aa-1.01□□□□□ -2.57
SMCHD1-209ENST00000583441 TMEM131LA2VDJ0 1609 aa-1.01□□□□□ -2.57
SMCHD1-209ENST00000583441 WIZO95785 1651 aa-1.01□□□□□ -2.57
SMCHD1-209ENST00000583441 ABCA13Q86UQ4 5058 aa-1.02□□□□□ -2.57
SMCHD1-209ENST00000583441 NESP48681 1621 aa-1.02□□□□□ -2.57
SMCHD1-209ENST00000583441 KIF14Q15058 1648 aa-1.02□□□□□ -2.57
SMCHD1-209ENST00000583441 MAGI3Q5TCQ9 1506 aa-1.02□□□□□ -2.57
SMCHD1-209ENST00000583441 ANKRD11Q6UB99 2663 aaPredicted RBP-1.02□□□□□ -2.57
SMCHD1-209ENST00000583441 MAP3K4Q9Y6R4 1608 aa-1.02□□□□□ -2.57
SMCHD1-209ENST00000583441 ACACAQ13085 2346 aa-1.03□□□□□ -2.57
SMCHD1-209ENST00000583441 LAMA1P25391 3075 aa-1.03□□□□□ -2.57
SMCHD1-209ENST00000583441 ANKRD50Q9ULJ7 1429 aa-1.03□□□□□ -2.57
SMCHD1-209ENST00000583441 DSPP15924 2871 aaKnown RBP-1.03□□□□□ -2.57
SMCHD1-209ENST00000583441 DEPDC5O75140 1603 aa-1.04□□□□□ -2.58
SMCHD1-209ENST00000583441 DNAH9Q9NYC9 4486 aa-1.04□□□□□ -2.58
SMCHD1-209ENST00000583441 ATP5EP2Q5VTU8 51 aa-1.04□□□□□ -2.58
SMCHD1-209ENST00000583441 AKAP9Q99996 3911 aa-1.05□□□□□ -2.58
SMCHD1-209ENST00000583441 DOT1LQ8TEK3 1739 aa-1.05□□□□□ -2.58
SMCHD1-209ENST00000583441 LYNX1G3V0Z9 82 aa-1.05□□□□□ -2.58
SMCHD1-209ENST00000583441 IFI6P09912 130 aa-1.05□□□□□ -2.58
SMCHD1-209ENST00000583441 TDRG1Q3Y452 100 aa-1.05□□□□□ -2.58
SMCHD1-209ENST00000583441 USP9XQ93008 2570 aaPredicted RBP-1.05□□□□□ -2.58
SMCHD1-209ENST00000583441 H0YAA0 97 aa-1.06□□□□□ -2.58
SMCHD1-209ENST00000583441 PRLHP81277 87 aa-1.06□□□□□ -2.58
SMCHD1-209ENST00000583441 DIP2BQ9P265 1576 aa-1.06□□□□□ -2.58
SMCHD1-209ENST00000583441 DNAH3Q8TD57 4116 aa-1.07□□□□□ -2.58
SMCHD1-209ENST00000583441 MUC17Q685J3 4493 aa-1.07□□□□□ -2.58
SMCHD1-209ENST00000583441 MGAM2Q2M2H8 2515 aa-1.08□□□□□ -2.58
SMCHD1-209ENST00000583441 DNHD1Q96M86 4753 aa-1.08□□□□□ -2.58
SMCHD1-209ENST00000583441 NDUFA4O00483 81 aa-1.08□□□□□ -2.58
SMCHD1-209ENST00000583441 PKHD1L1Q86WI1 4243 aa-1.08□□□□□ -2.58
SMCHD1-209ENST00000583441 PKD1L2Q7Z442 2459 aa-1.09□□□□□ -2.58
SMCHD1-209ENST00000583441 PPLO60437 1756 aa-1.09□□□□□ -2.58
SMCHD1-209ENST00000583441 CUBNO60494 3623 aa-1.09□□□□□ -2.58
SMCHD1-209ENST00000583441 MTORP42345 2549 aa-1.1□□□□□ -2.58
SMCHD1-209ENST00000583441 LRRK2Q5S007 2527 aa-1.1□□□□□ -2.58
SMCHD1-209ENST00000583441 NIPBLQ6KC79 2804 aaeCLIP-1.1□□□□□ -2.58
SMCHD1-209ENST00000583441 KALRNO60229 2985 aa-1.1□□□□□ -2.59
SMCHD1-209ENST00000583441 GNG2P59768 71 aa-1.1□□□□□ -2.59
SMCHD1-209ENST00000583441 NREPQ16612 68 aa-1.1□□□□□ -2.59
SMCHD1-209ENST00000583441 DEFB121Q5J5C9 76 aa-1.1□□□□□ -2.59
SMCHD1-209ENST00000583441 ST20Q9HBF5 79 aa-1.1□□□□□ -2.59
SMCHD1-209ENST00000583441 VPS13DQ5THJ4 4388 aa-1.1□□□□□ -2.59
SMCHD1-209ENST00000583441 PIK3C2BO00750 1634 aa-1.11□□□□□ -2.59
SMCHD1-209ENST00000583441 TEX15Q9BXT5 2789 aa-1.11□□□□□ -2.59
SMCHD1-209ENST00000583441 A0A087WXM4 84 aa-1.11□□□□□ -2.59
SMCHD1-209ENST00000583441 DEFA5Q01523 94 aa-1.11□□□□□ -2.59
SMCHD1-209ENST00000583441 ADIRFQ15847 76 aa-1.11□□□□□ -2.59
SMCHD1-209ENST00000583441 GCN1Q92616 2671 aaKnown RBP-1.11□□□□□ -2.59
SMCHD1-209ENST00000583441 ZNF831Q5JPB2 1677 aa-1.11□□□□□ -2.59
SMCHD1-209ENST00000583441 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP-1.11□□□□□ -2.59
SMCHD1-209ENST00000583441 ARFGEF2Q9Y6D5 1785 aa-1.11□□□□□ -2.59
SMCHD1-209ENST00000583441 DEFB130BP0DP73 79 aa-1.12□□□□□ -2.59
SMCHD1-209ENST00000583441 DEFB130AP0DP74 79 aa-1.12□□□□□ -2.59
SMCHD1-209ENST00000583441 S100A13Q99584 98 aa-1.12□□□□□ -2.59
SMCHD1-209ENST00000583441 CCDC168Q8NDH2 2452 aa-1.12□□□□□ -2.59
SMCHD1-209ENST00000583441 UTP20O75691 2785 aaKnown RBP-1.13□□□□□ -2.59
SMCHD1-209ENST00000583441 MAP3K1Q13233 1512 aa-1.13□□□□□ -2.59
SMCHD1-209ENST00000583441 DEFB131BA0A096LNP1 70 aa-1.13□□□□□ -2.59
SMCHD1-209ENST00000583441 IAPPP10997 89 aa-1.13□□□□□ -2.59
SMCHD1-209ENST00000583441 CELSR3Q9NYQ7 3312 aa-1.13□□□□□ -2.59
SMCHD1-209ENST00000583441 FAM186AA6NE01 2351 aa-1.13□□□□□ -2.59
SMCHD1-209ENST00000583441 WDR87Q6ZQQ6 2873 aa-1.14□□□□□ -2.59
SMCHD1-209ENST00000583441 MRPL33O75394 65 aaKnown RBP-1.14□□□□□ -2.59
SMCHD1-209ENST00000583441 SCN11AQ9UI33 1791 aa-1.14□□□□□ -2.59
SMCHD1-209ENST00000583441 NBEAQ8NFP9 2946 aa-1.15□□□□□ -2.59
SMCHD1-209ENST00000583441 RIF1Q5UIP0 2472 aaKnown RBP-1.15□□□□□ -2.59
SMCHD1-209ENST00000583441 COL6A5A8TX70 2615 aa-1.16□□□□□ -2.59
SMCHD1-209ENST00000583441 SMIM13P0DJ93 91 aa-1.16□□□□□ -2.6
SMCHD1-209ENST00000583441 S4R3F8 94 aa-1.16□□□□□ -2.6
SMCHD1-209ENST00000583441 ANK3Q12955 4377 aaKnown RBP-1.16□□□□□ -2.6
SMCHD1-209ENST00000583441 THOC2Q8NI27 1593 aaKnown RBP-1.17□□□□□ -2.6
SMCHD1-209ENST00000583441 CEP290O15078 2479 aa-1.17□□□□□ -2.6
SMCHD1-209ENST00000583441 COL12A1Q99715 3063 aa-1.18□□□□□ -2.6
SMCHD1-209ENST00000583441 LAMA3Q16787 3333 aa-1.18□□□□□ -2.6
SMCHD1-209ENST00000583441 A0A0C4DFX4 3053 aa-1.18□□□□□ -2.6
SMCHD1-209ENST00000583441 VPS13BQ7Z7G8 4022 aa-1.19□□□□□ -2.6
SMCHD1-209ENST00000583441 DDX60LQ5H9U9 1706 aaKnown RBP-1.2□□□□□ -2.6
SMCHD1-209ENST00000583441 H3BUT2 72 aa-1.2□□□□□ -2.6
SMCHD1-209ENST00000583441 NBEAL2Q6ZNJ1 2754 aa-1.2□□□□□ -2.6
SMCHD1-209ENST00000583441 ABCC1P33527 1531 aa-1.2□□□□□ -2.6
SMCHD1-209ENST00000583441 DNAH2Q9P225 4427 aa-1.21□□□□□ -2.6
SMCHD1-209ENST00000583441 APOBP04114 4563 aaKnown RBP-1.21□□□□□ -2.6
SMCHD1-209ENST00000583441 PLECQ15149 4684 aaKnown RBP-1.22□□□□□ -2.6
SMCHD1-209ENST00000583441 DEFB106AQ8N104 65 aa-1.22□□□□□ -2.6
SMCHD1-209ENST00000583441 UBL5Q9BZL1 73 aa-1.22□□□□□ -2.6
Retrieved 100 of 20,778 RNA–protein pairs in 70.5 ms