RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 H3BQF6 201 aa-2.12□□□□□ -2.75
SS18-214ENST00000580003 VPS13AQ96RL7 3174 aa-2.12□□□□□ -2.75
SS18-214ENST00000580003 POLR1AO95602 1720 aaPredicted RBP-2.12□□□□□ -2.75
SS18-214ENST00000580003 UBR1Q8IWV7 1749 aa-2.12□□□□□ -2.75
SS18-214ENST00000580003 A0A1B0GUL6 1792 aa-2.13□□□□□ -2.75
SS18-214ENST00000580003 KIF21BO75037 1637 aa-2.13□□□□□ -2.75
SS18-214ENST00000580003 PARP4Q9UKK3 1724 aaKnown RBP-2.13□□□□□ -2.75
SS18-214ENST00000580003 SPART-AS1P0CW21 52 aa-2.13□□□□□ -2.75
SS18-214ENST00000580003 CROCC2H7BZ55 1655 aa-2.13□□□□□ -2.75
SS18-214ENST00000580003 PREX1Q8TCU6 1659 aa-2.13□□□□□ -2.75
SS18-214ENST00000580003 SVBPQ8N300 66 aa-2.14□□□□□ -2.75
SS18-214ENST00000580003 TOP2BQ02880 1626 aa-2.14□□□□□ -2.75
SS18-214ENST00000580003 PDCD11Q14690 1871 aaKnown RBP-2.14□□□□□ -2.75
SS18-214ENST00000580003 CRYM-AS1A6NIL9 109 aa-2.15□□□□□ -2.75
SS18-214ENST00000580003 H3BQ15 152 aa-2.15□□□□□ -2.75
SS18-214ENST00000580003 SNAPC5O75971 98 aa-2.15□□□□□ -2.75
SS18-214ENST00000580003 MT-ATP8P03928 68 aa-2.15□□□□□ -2.75
SS18-214ENST00000580003 KRTDAPP60985 99 aa-2.15□□□□□ -2.75
SS18-214ENST00000580003 S100A12P80511 92 aa-2.15□□□□□ -2.75
SS18-214ENST00000580003 COX6B2Q6YFQ2 88 aa-2.15□□□□□ -2.75
SS18-214ENST00000580003 IER3IP1Q9Y5U9 82 aa-2.15□□□□□ -2.75
SS18-214ENST00000580003 A0A0G2JND7 137 aa-2.16□□□□□ -2.76
SS18-214ENST00000580003 CGREF1Q99674 301 aa-2.16□□□□□ -2.76
SS18-214ENST00000580003 LYNX1G3V0Z9 82 aa-2.17□□□□□ -2.76
SS18-214ENST00000580003 LINC00158P58513 81 aa-2.17□□□□□ -2.76
SS18-214ENST00000580003 NMSQ5H8A3 153 aa-2.17□□□□□ -2.76
SS18-214ENST00000580003 DEPDC5O75140 1603 aa-2.17□□□□□ -2.76
SS18-214ENST00000580003 MAPKBP1O60336 1514 aa-2.17□□□□□ -2.76
SS18-214ENST00000580003 PLCH1Q4KWH8 1693 aa-2.18□□□□□ -2.76
SS18-214ENST00000580003 EIF4G3O43432 1585 aaKnown RBP-2.18□□□□□ -2.76
SS18-214ENST00000580003 ATP10BO94823 1461 aa-2.18□□□□□ -2.76
SS18-214ENST00000580003 MYOM2P54296 1465 aa-2.18□□□□□ -2.76
SS18-214ENST00000580003 F8WEM9 126 aa-2.18□□□□□ -2.76
SS18-214ENST00000580003 TIMM8BQ9Y5J9 83 aaPredicted RBP-2.18□□□□□ -2.76
SS18-214ENST00000580003 TMEM131LA2VDJ0 1609 aa-2.18□□□□□ -2.76
SS18-214ENST00000580003 RGPD8O14715 1765 aaPredicted RBP-2.18□□□□□ -2.76
SS18-214ENST00000580003 RGPD5Q99666 1765 aa-2.18□□□□□ -2.76
SS18-214ENST00000580003 ITSN2Q9NZM3 1697 aa-2.18□□□□□ -2.76
SS18-214ENST00000580003 SPTY2D1-AS1A0A0U1RR47 76 aa-2.19□□□□□ -2.76
SS18-214ENST00000580003 C7orf77A4D0Y5 90 aa-2.19□□□□□ -2.76
SS18-214ENST00000580003 C3orf79P0CE67 100 aa-2.19□□□□□ -2.76
SS18-214ENST00000580003 MAGI3Q5TCQ9 1506 aa-2.2□□□□□ -2.76
SS18-214ENST00000580003 TMEM262E9PQX1 116 aa-2.2□□□□□ -2.76
SS18-214ENST00000580003 H0Y9P7 68 aa-2.2□□□□□ -2.76
SS18-214ENST00000580003 IAPPP10997 89 aa-2.2□□□□□ -2.76
SS18-214ENST00000580003 GNGT1P63211 74 aa-2.2□□□□□ -2.76
SS18-214ENST00000580003 TTTY10Q9BZA0 68 aa-2.2□□□□□ -2.76
SS18-214ENST00000580003 QSER1Q2KHR3 1735 aa-2.2□□□□□ -2.76
SS18-214ENST00000580003 ZFYVE16Q7Z3T8 1539 aa-2.21□□□□□ -2.76
SS18-214ENST00000580003 ARMS2P0C7Q2 107 aa-2.21□□□□□ -2.76
SS18-214ENST00000580003 WT1-ASQ06250 92 aa-2.21□□□□□ -2.76
SS18-214ENST00000580003 MED14O60244 1454 aa-2.21□□□□□ -2.76
SS18-214ENST00000580003 ERVK-7P63135 1459 aa-2.21□□□□□ -2.76
SS18-214ENST00000580003 ROCK2O75116 1388 aaKnown RBP-2.22□□□□□ -2.76
SS18-214ENST00000580003 SPHKAPQ2M3C7 1700 aa-2.22□□□□□ -2.76
SS18-214ENST00000580003 SUPT6HQ7KZ85 1726 aaKnown RBP-2.22□□□□□ -2.76
SS18-214ENST00000580003 EEA1Q15075 1411 aa-2.22□□□□□ -2.76
SS18-214ENST00000580003 FAM107BQ9H098 131 aa-2.22□□□□□ -2.76
SS18-214ENST00000580003 TARBP1Q13395 1621 aaKnown RBP-2.22□□□□□ -2.76
SS18-214ENST00000580003 TEX14Q8IWB6 1497 aa-2.22□□□□□ -2.77
SS18-214ENST00000580003 ZC3H13Q5T200 1668 aaKnown RBP-2.22□□□□□ -2.77
SS18-214ENST00000580003 XIRP2A4UGR9 3374 aa-2.23□□□□□ -2.77
SS18-214ENST00000580003 UTRNP46939 3433 aa-2.23□□□□□ -2.77
SS18-214ENST00000580003 TRBV7-7A0A0K0K1E9 115 aa-2.23□□□□□ -2.77
SS18-214ENST00000580003 HMGN1P05114 100 aa-2.23□□□□□ -2.77
SS18-214ENST00000580003 COX7BP24311 80 aa-2.23□□□□□ -2.77
SS18-214ENST00000580003 TOPAZ1Q8N9V7 1692 aa-2.23□□□□□ -2.77
SS18-214ENST00000580003 ARHGAP5Q13017 1502 aa-2.23□□□□□ -2.77
SS18-214ENST00000580003 KIF20BQ96Q89 1820 aa-2.24□□□□□ -2.77
SS18-214ENST00000580003 NRXN3Q9Y4C0 1643 aa-2.24□□□□□ -2.77
SS18-214ENST00000580003 GNG4P50150 75 aa-2.24□□□□□ -2.77
SS18-214ENST00000580003 LRRC7Q96NW7 1537 aa-2.24□□□□□ -2.77
SS18-214ENST00000580003 KIF1AQ12756 1690 aa-2.25□□□□□ -2.77
SS18-214ENST00000580003 M0QY20 66 aa-2.25□□□□□ -2.77
SS18-214ENST00000580003 TRGV9Q99603 122 aa-2.25□□□□□ -2.77
SS18-214ENST00000580003 NESP48681 1621 aa-2.25□□□□□ -2.77
SS18-214ENST00000580003 DOT1LQ8TEK3 1739 aa-2.25□□□□□ -2.77
SS18-214ENST00000580003 NCOA2Q15596 1464 aa-2.26□□□□□ -2.77
SS18-214ENST00000580003 MLH3Q9UHC1 1453 aa-2.26□□□□□ -2.77
SS18-214ENST00000580003 C20orf202A1L168 122 aa-2.26□□□□□ -2.77
SS18-214ENST00000580003 IFI6P09912 130 aa-2.26□□□□□ -2.77
SS18-214ENST00000580003 RPS27P42677 84 aaKnown RBP-2.26□□□□□ -2.77
SS18-214ENST00000580003 RPS27LQ71UM5 84 aaKnown RBP-2.26□□□□□ -2.77
SS18-214ENST00000580003 DEFB107AQ8IZN7 70 aa-2.26□□□□□ -2.77
SS18-214ENST00000580003 SERP2Q8N6R1 65 aa-2.26□□□□□ -2.77
SS18-214ENST00000580003 NOP10Q9NPE3 64 aaKnown RBP-2.26□□□□□ -2.77
SS18-214ENST00000580003 SHPRHQ149N8 1683 aa-2.26□□□□□ -2.77
SS18-214ENST00000580003 UBR3Q6ZT12 1888 aa-2.26□□□□□ -2.77
SS18-214ENST00000580003 PPP3R1P63098 170 aa-2.27□□□□□ -2.77
SS18-214ENST00000580003 HSD52Q0P140 79 aa-2.28□□□□□ -2.77
SS18-214ENST00000580003 PSENENQ9NZ42 101 aa-2.28□□□□□ -2.77
SS18-214ENST00000580003 PLIN4Q96Q06 1357 aa-2.28□□□□□ -2.77
SS18-214ENST00000580003 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP-2.28□□□□□ -2.77
SS18-214ENST00000580003 THOC2Q8NI27 1593 aaKnown RBP-2.28□□□□□ -2.77
SS18-214ENST00000580003 LRRIQ1Q96JM4 1722 aa-2.28□□□□□ -2.78
SS18-214ENST00000580003 PSMG4Q5JS54 123 aa-2.29□□□□□ -2.78
SS18-214ENST00000580003 SAMD9Q5K651 1589 aa-2.29□□□□□ -2.78
SS18-214ENST00000580003 NRKQ7Z2Y5 1582 aa-2.29□□□□□ -2.78
SS18-214ENST00000580003 MON2Q7Z3U7 1717 aa-2.29□□□□□ -2.78
SS18-214ENST00000580003 NALCNQ8IZF0 1738 aa-2.29□□□□□ -2.78
Retrieved 100 of 20,778 RNA–protein pairs in 132.3 ms