RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 KCNQ1DNQ9H478 68 aa1.9□□□□□ -2.11
SMCHD1-203ENST00000577880 TRAV7A0A075B6U4 112 aa1.9□□□□□ -2.11
SMCHD1-203ENST00000577880 LCE2AQ5TA79 106 aaPredicted RBP1.9□□□□□ -2.11
SMCHD1-203ENST00000577880 TRBV7-4A0A0J9YYF1 115 aa1.9□□□□□ -2.11
SMCHD1-203ENST00000577880 FAM229BQ4G0N7 80 aa1.9□□□□□ -2.11
SMCHD1-203ENST00000577880 SPRR4Q96PI1 79 aa1.9□□□□□ -2.11
SMCHD1-203ENST00000577880 ANAPC11Q9NYG5 84 aa1.9□□□□□ -2.11
SMCHD1-203ENST00000577880 A0A1B0GU69 56 aa1.89□□□□□ -2.11
SMCHD1-203ENST00000577880 RYR3Q15413 4870 aa1.89□□□□□ -2.11
SMCHD1-203ENST00000577880 A0A1W2PNN7 141 aa1.89□□□□□ -2.11
SMCHD1-203ENST00000577880 ZNF469Q96JG9 3925 aaPredicted RBP1.89□□□□□ -2.11
SMCHD1-203ENST00000577880 CUBNO60494 3623 aa1.89□□□□□ -2.11
SMCHD1-203ENST00000577880 UBR5O95071 2799 aaPredicted RBP1.89□□□□□ -2.11
SMCHD1-203ENST00000577880 LINC01554Q52M75 96 aa1.89□□□□□ -2.11
SMCHD1-203ENST00000577880 ATMQ13315 3056 aa1.89□□□□□ -2.11
SMCHD1-203ENST00000577880 H3BPC8 53 aa1.89□□□□□ -2.11
SMCHD1-203ENST00000577880 A8MWP4 228 aa1.88□□□□□ -2.11
SMCHD1-203ENST00000577880 LINC00846Q9NV44 126 aa1.88□□□□□ -2.11
SMCHD1-203ENST00000577880 AKAP13Q12802 2813 aa1.88□□□□□ -2.11
SMCHD1-203ENST00000577880 KRTAP3-3Q9BYR6 98 aa1.88□□□□□ -2.11
SMCHD1-203ENST00000577880 KRTAP3-2Q9BYR7 98 aa1.88□□□□□ -2.11
SMCHD1-203ENST00000577880 IGLV8-61A0A075B6I0 122 aa1.88□□□□□ -2.11
SMCHD1-203ENST00000577880 CSMD1Q96PZ7 3565 aa1.88□□□□□ -2.11
SMCHD1-203ENST00000577880 LYSTQ99698 3801 aa1.87□□□□□ -2.11
SMCHD1-203ENST00000577880 CD164Q04900 197 aa1.87□□□□□ -2.11
SMCHD1-203ENST00000577880 A0A1B0GVX0 72 aa1.87□□□□□ -2.11
SMCHD1-203ENST00000577880 C9orf129Q5T035 196 aaKnown RBP1.87□□□□□ -2.11
SMCHD1-203ENST00000577880 SOSTDC1Q6X4U4 206 aa1.87□□□□□ -2.11
SMCHD1-203ENST00000577880 C8orf17Q9NRJ1 99 aa1.87□□□□□ -2.11
SMCHD1-203ENST00000577880 PLAC8Q9NZF1 115 aa1.87□□□□□ -2.11
SMCHD1-203ENST00000577880 SMIM29Q86T20 159 aa1.87□□□□□ -2.11
SMCHD1-203ENST00000577880 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP1.87□□□□□ -2.11
SMCHD1-203ENST00000577880 IGFL1Q6UW32 110 aa1.87□□□□□ -2.11
SMCHD1-203ENST00000577880 CAMK2N1Q7Z7J9 78 aa1.87□□□□□ -2.11
SMCHD1-203ENST00000577880 TMEM254Q8TBM7 123 aa1.86□□□□□ -2.11
SMCHD1-203ENST00000577880 DNAH3Q8TD57 4116 aa1.86□□□□□ -2.11
SMCHD1-203ENST00000577880 FLNCQ14315 2725 aa1.86□□□□□ -2.11
SMCHD1-203ENST00000577880 LAMA1P25391 3075 aa1.86□□□□□ -2.11
SMCHD1-203ENST00000577880 HRES1P13985 223 aa1.86□□□□□ -2.11
SMCHD1-203ENST00000577880 CSAG1Q6PB30 78 aa1.86□□□□□ -2.11
SMCHD1-203ENST00000577880 COX7CP15954 63 aa1.86□□□□□ -2.11
SMCHD1-203ENST00000577880 URB1-AS1Q96HZ7 61 aa1.86□□□□□ -2.11
SMCHD1-203ENST00000577880 K7EQZ3 153 aa1.85□□□□□ -2.11
SMCHD1-203ENST00000577880 KRTAP10-1P60331 282 aa1.85□□□□□ -2.11
SMCHD1-203ENST00000577880 A0A087WVE0 104 aa1.85□□□□□ -2.11
SMCHD1-203ENST00000577880 A0A096LNJ9 63 aa1.85□□□□□ -2.11
SMCHD1-203ENST00000577880 Q6ZQT0 140 aa1.85□□□□□ -2.11
SMCHD1-203ENST00000577880 FP248Q71RG6 208 aaPredicted RBP1.85□□□□□ -2.11
SMCHD1-203ENST00000577880 MAP1AP78559 2803 aaPredicted RBP1.85□□□□□ -2.11
SMCHD1-203ENST00000577880 MGAQ8IWI9 3026 aa1.85□□□□□ -2.11
SMCHD1-203ENST00000577880 PCLOQ9Y6V0 5065 aa1.85□□□□□ -2.11
SMCHD1-203ENST00000577880 PRRC2CQ9Y520 2896 aaKnown RBP1.85□□□□□ -2.11
SMCHD1-203ENST00000577880 VPS13CQ709C8 3753 aa1.85□□□□□ -2.11
SMCHD1-203ENST00000577880 CR1P17927 2039 aa1.84□□□□□ -2.11
SMCHD1-203ENST00000577880 IGLV5-48A0A075B6I7 105 aa1.84□□□□□ -2.11
SMCHD1-203ENST00000577880 LOC110117498A0A087WWA1 95 aa1.84□□□□□ -2.11
SMCHD1-203ENST00000577880 PRR15Q8IV56 129 aa1.84□□□□□ -2.11
SMCHD1-203ENST00000577880 CELSR3Q9NYQ7 3312 aa1.84□□□□□ -2.11
SMCHD1-203ENST00000577880 SMIM26A0A096LP01 95 aa1.84□□□□□ -2.12
SMCHD1-203ENST00000577880 LINC01546A6NGU7 62 aa1.84□□□□□ -2.12
SMCHD1-203ENST00000577880 KRTAP10-2P60368 255 aa1.83□□□□□ -2.12
SMCHD1-203ENST00000577880 SPINT4Q6UDR6 99 aa1.83□□□□□ -2.12
SMCHD1-203ENST00000577880 Q8N1X5 172 aa1.83□□□□□ -2.12
SMCHD1-203ENST00000577880 PLAC4Q8WY50 150 aa1.83□□□□□ -2.12
SMCHD1-203ENST00000577880 NSD1Q96L73 2696 aaPredicted RBP1.83□□□□□ -2.12
SMCHD1-203ENST00000577880 LINC01600Q96MT4 127 aa1.83□□□□□ -2.12
SMCHD1-203ENST00000577880 CRIPTQ9P021 101 aa1.83□□□□□ -2.12
SMCHD1-203ENST00000577880 KRTAP9-7A8MTY7 169 aa1.83□□□□□ -2.12
SMCHD1-203ENST00000577880 Q8N377 158 aa1.83□□□□□ -2.12
SMCHD1-203ENST00000577880 Q6ZR54 194 aa1.82□□□□□ -2.12
SMCHD1-203ENST00000577880 ERC2-IT1O76042 136 aa1.82□□□□□ -2.12
SMCHD1-203ENST00000577880 YPEL4Q96NS1 127 aa1.81□□□□□ -2.12
SMCHD1-203ENST00000577880 LCE2CQ5TA81 110 aa1.81□□□□□ -2.12
SMCHD1-203ENST00000577880 FAM218AQ96MZ4 157 aa1.81□□□□□ -2.12
SMCHD1-203ENST00000577880 ITPR2Q14571 2701 aa1.81□□□□□ -2.12
SMCHD1-203ENST00000577880 UTP20O75691 2785 aaKnown RBP1.81□□□□□ -2.12
SMCHD1-203ENST00000577880 PSPHP1O15172 72 aa1.81□□□□□ -2.12
SMCHD1-203ENST00000577880 A0A0G2JQZ4 141 aa1.8□□□□□ -2.12
SMCHD1-203ENST00000577880 PDZD2O15018 2839 aa1.8□□□□□ -2.12
SMCHD1-203ENST00000577880 UQCR11O14957 56 aa1.8□□□□□ -2.12
SMCHD1-203ENST00000577880 LINC00310P59036 64 aa1.8□□□□□ -2.12
SMCHD1-203ENST00000577880 CSMD2Q7Z408 3487 aa1.8□□□□□ -2.12
SMCHD1-203ENST00000577880 CELSR1Q9NYQ6 3014 aa1.8□□□□□ -2.12
SMCHD1-203ENST00000577880 PMAIP1Q13794 54 aa1.8□□□□□ -2.12
SMCHD1-203ENST00000577880 ZCCHC13Q8WW36 166 aaKnown RBP1.8□□□□□ -2.12
SMCHD1-203ENST00000577880 CRCT1Q9UGL9 99 aa1.8□□□□□ -2.12
SMCHD1-203ENST00000577880 R4GN34 69 aa1.8□□□□□ -2.12
SMCHD1-203ENST00000577880 KALRNO60229 2985 aa1.8□□□□□ -2.12
SMCHD1-203ENST00000577880 A0A0D9SG42 100 aa1.8□□□□□ -2.12
SMCHD1-203ENST00000577880 OTOGQ6ZRI0 2925 aa1.79□□□□□ -2.12
SMCHD1-203ENST00000577880 NF1P21359 2839 aa1.79□□□□□ -2.12
SMCHD1-203ENST00000577880 FAM104AQ969W3 186 aa1.79□□□□□ -2.12
SMCHD1-203ENST00000577880 KRTAP1-5Q9BYS1 174 aa1.79□□□□□ -2.12
SMCHD1-203ENST00000577880 S4R3F8 94 aa1.79□□□□□ -2.12
SMCHD1-203ENST00000577880 A8MUN3 132 aa1.79□□□□□ -2.12
SMCHD1-203ENST00000577880 RYR2Q92736 4967 aa1.79□□□□□ -2.12
SMCHD1-203ENST00000577880 SPINK7P58062 85 aa1.79□□□□□ -2.12
SMCHD1-203ENST00000577880 LITAFQ99732 161 aa1.79□□□□□ -2.12
SMCHD1-203ENST00000577880 HERC2O95714 4834 aa1.79□□□□□ -2.12
SMCHD1-203ENST00000577880 FBN1P35555 2871 aaKnown RBP1.78□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms