RNA–Protein interactions for RNA: ENST00000577300.1

SMCHD1-202, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 506 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-202ENST00000577300 UBE2DNLQ8IWF7 75 aa1.3□□□□□ -2.2
SMCHD1-202ENST00000577300 USMG5Q96IX5 58 aa1.29□□□□□ -2.2
SMCHD1-202ENST00000577300 CACNA1EQ15878 2313 aa1.28□□□□□ -2.2
SMCHD1-202ENST00000577300 DEFB109BQ30KR1 87 aa1.28□□□□□ -2.2
SMCHD1-202ENST00000577300 KNL1Q8NG31 2342 aa1.28□□□□□ -2.2
SMCHD1-202ENST00000577300 CNOT1A5YKK6 2376 aaKnown RBP1.28□□□□□ -2.2
SMCHD1-202ENST00000577300 COL6A6A6NMZ7 2263 aa1.27□□□□□ -2.21
SMCHD1-202ENST00000577300 SPRR1AP35321 89 aa1.27□□□□□ -2.21
SMCHD1-202ENST00000577300 SPINK13Q1W4C9 94 aa1.27□□□□□ -2.21
SMCHD1-202ENST00000577300 CNTRLQ7Z7A1 2325 aa1.26□□□□□ -2.21
SMCHD1-202ENST00000577300 PRLHP81277 87 aa1.26□□□□□ -2.21
SMCHD1-202ENST00000577300 APLNQ9ULZ1 77 aa1.26□□□□□ -2.21
SMCHD1-202ENST00000577300 DEFB110Q30KQ9 67 aa1.25□□□□□ -2.21
SMCHD1-202ENST00000577300 KRTAP5-10Q6L8G5 202 aa1.25□□□□□ -2.21
SMCHD1-202ENST00000577300 SPRR1BP22528 89 aa1.24□□□□□ -2.21
SMCHD1-202ENST00000577300 S4R3F8 94 aa1.24□□□□□ -2.21
SMCHD1-202ENST00000577300 PCNX1Q96RV3 2341 aa1.23□□□□□ -2.21
SMCHD1-202ENST00000577300 ICE1Q9Y2F5 2266 aa1.23□□□□□ -2.21
SMCHD1-202ENST00000577300 SPINK1P00995 79 aa1.23□□□□□ -2.21
SMCHD1-202ENST00000577300 DEFB119Q8N690 84 aa1.23□□□□□ -2.21
SMCHD1-202ENST00000577300 DEFB108BQ8NET1 73 aa1.23□□□□□ -2.21
SMCHD1-202ENST00000577300 CACNA1GO43497 2377 aa1.23□□□□□ -2.21
SMCHD1-202ENST00000577300 NAV3Q8IVL0 2385 aa1.23□□□□□ -2.21
SMCHD1-202ENST00000577300 IGF2RP11717 2491 aa1.22□□□□□ -2.21
SMCHD1-202ENST00000577300 H3BUA1 57 aa1.22□□□□□ -2.21
SMCHD1-202ENST00000577300 RHPN1-AS1Q9BWJ2 59 aa1.22□□□□□ -2.21
SMCHD1-202ENST00000577300 HELZ2Q9BYK8 2649 aaKnown RBP1.22□□□□□ -2.21
SMCHD1-202ENST00000577300 HMCN1Q96RW7 5635 aa1.21□□□□□ -2.22
SMCHD1-202ENST00000577300 ZDBF2Q9HCK1 2354 aa1.2□□□□□ -2.22
SMCHD1-202ENST00000577300 WNK2Q9Y3S1 2297 aa1.19□□□□□ -2.22
SMCHD1-202ENST00000577300 HTN1P15515 57 aa1.19□□□□□ -2.22
SMCHD1-202ENST00000577300 MUC16Q8WXI7 14507 aa1.19□□□□□ -2.22
SMCHD1-202ENST00000577300 VPS13DQ5THJ4 4388 aa1.19□□□□□ -2.22
SMCHD1-202ENST00000577300 A0A0D9SG42 100 aa1.18□□□□□ -2.22
SMCHD1-202ENST00000577300 CACNA1BQ00975 2339 aa1.17□□□□□ -2.22
SMCHD1-202ENST00000577300 PTPRZ1P23471 2315 aaPredicted RBP1.17□□□□□ -2.22
SMCHD1-202ENST00000577300 WNK1Q9H4A3 2382 aa1.16□□□□□ -2.22
SMCHD1-202ENST00000577300 DEFB136Q30KP8 78 aa1.16□□□□□ -2.22
SMCHD1-202ENST00000577300 Q5VSD8 79 aa1.16□□□□□ -2.22
SMCHD1-202ENST00000577300 PRO0255Q9UI72 69 aa1.16□□□□□ -2.22
SMCHD1-202ENST00000577300 DEFB103AP81534 67 aa1.15□□□□□ -2.23
SMCHD1-202ENST00000577300 TPRP12270 2363 aaKnown RBP1.15□□□□□ -2.23
SMCHD1-202ENST00000577300 CHD7Q9P2D1 2997 aa1.14□□□□□ -2.23
SMCHD1-202ENST00000577300 PIEZO2Q9H5I5 2752 aa1.14□□□□□ -2.23
SMCHD1-202ENST00000577300 FAM208BQ5VWN6 2430 aa1.14□□□□□ -2.23
SMCHD1-202ENST00000577300 CD52P31358 61 aa1.13□□□□□ -2.23
SMCHD1-202ENST00000577300 NOP10Q9NPE3 64 aaKnown RBP1.13□□□□□ -2.23
SMCHD1-202ENST00000577300 ROS1P08922 2347 aa1.13□□□□□ -2.23
SMCHD1-202ENST00000577300 MYCBP2O75592 4640 aa1.12□□□□□ -2.23
SMCHD1-202ENST00000577300 H3BUX3 64 aa1.12□□□□□ -2.23
SMCHD1-202ENST00000577300 SPTBN1Q01082 2364 aaKnown RBP1.12□□□□□ -2.23
SMCHD1-202ENST00000577300 DSPP15924 2871 aaKnown RBP1.11□□□□□ -2.23
SMCHD1-202ENST00000577300 DNAH11Q96DT5 4516 aa1.1□□□□□ -2.23
SMCHD1-202ENST00000577300 PKDREJQ9NTG1 2253 aa1.1□□□□□ -2.23
SMCHD1-202ENST00000577300 NBPF19A0A087WUL8 3843 aa1.1□□□□□ -2.23
SMCHD1-202ENST00000577300 JMJD1CQ15652 2540 aa1.1□□□□□ -2.23
SMCHD1-202ENST00000577300 A0A096LNI7 61 aa1.1□□□□□ -2.23
SMCHD1-202ENST00000577300 OTOGQ6ZRI0 2925 aa1.09□□□□□ -2.23
SMCHD1-202ENST00000577300 CELSR2Q9HCU4 2923 aa1.09□□□□□ -2.24
SMCHD1-202ENST00000577300 TENM2Q9NT68 2774 aa1.08□□□□□ -2.24
SMCHD1-202ENST00000577300 MGAQ8IWI9 3026 aa1.08□□□□□ -2.24
SMCHD1-202ENST00000577300 ZNF462Q96JM2 2506 aa1.08□□□□□ -2.24
SMCHD1-202ENST00000577300 A0A096LPF7 62 aa1.08□□□□□ -2.24
SMCHD1-202ENST00000577300 AKAP6Q13023 2319 aa1.07□□□□□ -2.24
SMCHD1-202ENST00000577300 SPINK6Q6UWN8 80 aa1.07□□□□□ -2.24
SMCHD1-202ENST00000577300 A0A0C4DFX4 3053 aa1.07□□□□□ -2.24
SMCHD1-202ENST00000577300 REV3LO60673 3130 aa1.07□□□□□ -2.24
SMCHD1-202ENST00000577300 COL6A3P12111 3177 aa1.06□□□□□ -2.24
SMCHD1-202ENST00000577300 Q9Y3F1 56 aa1.06□□□□□ -2.24
SMCHD1-202ENST00000577300 CSPG4Q6UVK1 2322 aa1.06□□□□□ -2.24
SMCHD1-202ENST00000577300 ACACAQ13085 2346 aa1.05□□□□□ -2.24
SMCHD1-202ENST00000577300 M0QZ58 72 aa1.05□□□□□ -2.24
SMCHD1-202ENST00000577300 AKAP9Q99996 3911 aa1.05□□□□□ -2.24
SMCHD1-202ENST00000577300 ZFHX4Q86UP3 3567 aa1.04□□□□□ -2.24
SMCHD1-202ENST00000577300 SPTA1P02549 2419 aa1.04□□□□□ -2.24
SMCHD1-202ENST00000577300 EP300Q09472 2414 aaPredicted RBP1.04□□□□□ -2.24
SMCHD1-202ENST00000577300 PRRC2CQ9Y520 2896 aaKnown RBP1.03□□□□□ -2.24
SMCHD1-202ENST00000577300 SPTBN2O15020 2390 aa1.03□□□□□ -2.25
SMCHD1-202ENST00000577300 DEFB133Q30KQ1 61 aa1.02□□□□□ -2.25
SMCHD1-202ENST00000577300 C2CD3Q4AC94 2353 aa1.02□□□□□ -2.25
SMCHD1-202ENST00000577300 SACSQ9NZJ4 4579 aa1.02□□□□□ -2.25
SMCHD1-202ENST00000577300 ASH1LQ9NR48 2969 aaKnown RBP1.02□□□□□ -2.25
SMCHD1-202ENST00000577300 SPTBN4Q9H254 2564 aa1.02□□□□□ -2.25
SMCHD1-202ENST00000577300 DNAH8Q96JB1 4490 aa1.01□□□□□ -2.25
SMCHD1-202ENST00000577300 CHD6Q8TD26 2715 aa1.01□□□□□ -2.25
SMCHD1-202ENST00000577300 CELSR1Q9NYQ6 3014 aa1.01□□□□□ -2.25
SMCHD1-202ENST00000577300 DEFB124Q8NES8 71 aa1□□□□□ -2.25
SMCHD1-202ENST00000577300 ABCA2Q9BZC7 2435 aa0.99□□□□□ -2.25
SMCHD1-202ENST00000577300 LYSTQ99698 3801 aa0.98□□□□□ -2.25
SMCHD1-202ENST00000577300 NCOR1O75376 2440 aa0.98□□□□□ -2.25
SMCHD1-202ENST00000577300 GVINP1Q7Z2Y8 2422 aa0.98□□□□□ -2.25
SMCHD1-202ENST00000577300 DMBT1Q9UGM3 2413 aaPredicted RBP0.98□□□□□ -2.25
SMCHD1-202ENST00000577300 COL6A5A8TX70 2615 aa0.98□□□□□ -2.25
SMCHD1-202ENST00000577300 TENM3Q9P273 2699 aa0.98□□□□□ -2.25
SMCHD1-202ENST00000577300 CACNA1HO95180 2353 aa0.97□□□□□ -2.25
SMCHD1-202ENST00000577300 WDR87Q6ZQQ6 2873 aa0.97□□□□□ -2.25
SMCHD1-202ENST00000577300 APC2O95996 2303 aa0.97□□□□□ -2.25
SMCHD1-202ENST00000577300 LINC01556Q5JQF7 62 aa0.97□□□□□ -2.25
SMCHD1-202ENST00000577300 TNRC18O15417 2968 aaPredicted RBP0.97□□□□□ -2.25
SMCHD1-202ENST00000577300 BSNQ9UPA5 3926 aa0.97□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms