RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 KRTAP13-2Q52LG2 175 aa1.75□□□□□ -2.13
NUP88-209ENST00000574855 LINC00308Q8TCZ7 52 aa1.75□□□□□ -2.13
NUP88-209ENST00000574855 WFDC10AQ9H1F0 79 aa1.75□□□□□ -2.13
NUP88-209ENST00000574855 TOMM7Q9P0U1 55 aa1.75□□□□□ -2.13
NUP88-209ENST00000574855 DMXL1Q9Y485 3027 aa1.75□□□□□ -2.13
NUP88-209ENST00000574855 DSPP15924 2871 aaKnown RBP1.75□□□□□ -2.13
NUP88-209ENST00000574855 PRRC2CQ9Y520 2896 aaKnown RBP1.75□□□□□ -2.13
NUP88-209ENST00000574855 DOPEY1Q5JWR5 2465 aa1.74□□□□□ -2.13
NUP88-209ENST00000574855 LINC00959A0A1B0GUT2 108 aa1.74□□□□□ -2.13
NUP88-209ENST00000574855 DNAL4O96015 105 aa1.74□□□□□ -2.13
NUP88-209ENST00000574855 IGLV6-57P01721 117 aa1.74□□□□□ -2.13
NUP88-209ENST00000574855 COX6A2Q02221 97 aa1.74□□□□□ -2.13
NUP88-209ENST00000574855 COX17Q14061 63 aa1.74□□□□□ -2.13
NUP88-209ENST00000574855 Q6JHZ5 121 aa1.74□□□□□ -2.13
NUP88-209ENST00000574855 Q8IZM0 81 aa1.74□□□□□ -2.13
NUP88-209ENST00000574855 WFDC9Q8NEX5 89 aa1.74□□□□□ -2.13
NUP88-209ENST00000574855 ZNF625Q96I27 306 aaPredicted RBP1.74□□□□□ -2.13
NUP88-209ENST00000574855 PRR15LQ9BU68 103 aa1.74□□□□□ -2.13
NUP88-209ENST00000574855 CSPG4Q6UVK1 2322 aa1.74□□□□□ -2.13
NUP88-209ENST00000574855 DMXL2Q8TDJ6 3036 aa1.74□□□□□ -2.13
NUP88-209ENST00000574855 ADGRG4Q8IZF6 3080 aa1.73□□□□□ -2.13
NUP88-209ENST00000574855 NCOR2Q9Y618 2525 aa1.73□□□□□ -2.13
NUP88-209ENST00000574855 SPTAN1Q13813 2472 aaKnown RBP1.73□□□□□ -2.13
NUP88-209ENST00000574855 NBDYA0A0U1RRE5 68 aa1.73□□□□□ -2.13
NUP88-209ENST00000574855 H3BNG1 76 aa1.73□□□□□ -2.13
NUP88-209ENST00000574855 ANGP03950 147 aaKnown RBP1.73□□□□□ -2.13
NUP88-209ENST00000574855 CCL18P55774 89 aa1.73□□□□□ -2.13
NUP88-209ENST00000574855 LELP1Q5T871 98 aa1.73□□□□□ -2.13
NUP88-209ENST00000574855 SMR3AQ99954 134 aa1.73□□□□□ -2.13
NUP88-209ENST00000574855 ABCA2Q9BZC7 2435 aa1.73□□□□□ -2.13
NUP88-209ENST00000574855 ZFHX4Q86UP3 3567 aa1.73□□□□□ -2.13
NUP88-209ENST00000574855 CEP295Q9C0D2 2601 aa1.73□□□□□ -2.13
NUP88-209ENST00000574855 PIEZO1Q92508 2521 aa1.73□□□□□ -2.13
NUP88-209ENST00000574855 SPG11Q96JI7 2443 aa1.72□□□□□ -2.13
NUP88-209ENST00000574855 CFAP47Q6ZTR5 3102 aa1.72□□□□□ -2.13
NUP88-209ENST00000574855 ATMQ13315 3056 aa1.72□□□□□ -2.13
NUP88-209ENST00000574855 BOD1L1Q8NFC6 3051 aa1.72□□□□□ -2.13
NUP88-209ENST00000574855 A0A087WTM6 91 aa1.72□□□□□ -2.13
NUP88-209ENST00000574855 HTN3P15516 51 aa1.72□□□□□ -2.13
NUP88-209ENST00000574855 RPL37AP61513 92 aaKnown RBP1.72□□□□□ -2.13
NUP88-209ENST00000574855 DEFB135Q30KP9 77 aa1.72□□□□□ -2.13
NUP88-209ENST00000574855 LINC01558Q9Y6Z2 57 aa1.72□□□□□ -2.13
NUP88-209ENST00000574855 ZZEF1O43149 2961 aa1.72□□□□□ -2.13
NUP88-209ENST00000574855 BSNQ9UPA5 3926 aa1.72□□□□□ -2.13
NUP88-209ENST00000574855 NBEAQ8NFP9 2946 aa1.72□□□□□ -2.13
NUP88-209ENST00000574855 DOPEY2Q9Y3R5 2298 aa1.71□□□□□ -2.13
NUP88-209ENST00000574855 ACACBO00763 2458 aa1.71□□□□□ -2.14
NUP88-209ENST00000574855 PKD1L2Q7Z442 2459 aa1.71□□□□□ -2.14
NUP88-209ENST00000574855 A0A096LPF7 62 aa1.71□□□□□ -2.14
NUP88-209ENST00000574855 LINC00304Q8N9R0 145 aa1.71□□□□□ -2.14
NUP88-209ENST00000574855 SMIM11BQ8TCY0 68 aa1.71□□□□□ -2.14
NUP88-209ENST00000574855 SPTBN4Q9H254 2564 aa1.71□□□□□ -2.14
NUP88-209ENST00000574855 SORL1Q92673 2214 aa1.71□□□□□ -2.14
NUP88-209ENST00000574855 CACNA1AO00555 2505 aa1.7□□□□□ -2.14
NUP88-209ENST00000574855 A0A087WVE0 104 aa1.7□□□□□ -2.14
NUP88-209ENST00000574855 DEFB4AO15263 64 aa1.7□□□□□ -2.14
NUP88-209ENST00000574855 CLPSL2Q6UWE3 100 aa1.7□□□□□ -2.14
NUP88-209ENST00000574855 SNURFQ9Y675 71 aa1.7□□□□□ -2.14
NUP88-209ENST00000574855 FAM208BQ5VWN6 2430 aa1.7□□□□□ -2.14
NUP88-209ENST00000574855 DCHS1Q96JQ0 3298 aa1.7□□□□□ -2.14
NUP88-209ENST00000574855 ASPMQ8IZT6 3477 aa1.7□□□□□ -2.14
NUP88-209ENST00000574855 NAV2Q8IVL1 2488 aa1.69□□□□□ -2.14
NUP88-209ENST00000574855 SPENQ96T58 3664 aaKnown RBP1.69□□□□□ -2.14
NUP88-209ENST00000574855 FN1P02751 2386 aaKnown RBP1.69□□□□□ -2.14
NUP88-209ENST00000574855 DEFB131BA0A096LNP1 70 aa1.69□□□□□ -2.14
NUP88-209ENST00000574855 GVQW2A0A096LPI5 108 aaPredicted RBP1.69□□□□□ -2.14
NUP88-209ENST00000574855 INE1O15225 51 aa1.69□□□□□ -2.14
NUP88-209ENST00000574855 ATP5EP2Q5VTU8 51 aa1.69□□□□□ -2.14
NUP88-209ENST00000574855 CREBBPQ92793 2442 aa1.69□□□□□ -2.14
NUP88-209ENST00000574855 LRBAP50851 2863 aa1.69□□□□□ -2.14
NUP88-209ENST00000574855 HRNRQ86YZ3 2850 aaPredicted RBP1.69□□□□□ -2.14
NUP88-209ENST00000574855 CHD8Q9HCK8 2581 aa1.68□□□□□ -2.14
NUP88-209ENST00000574855 LAMA5O15230 3695 aa1.68□□□□□ -2.14
NUP88-209ENST00000574855 ZNF462Q96JM2 2506 aa1.68□□□□□ -2.14
NUP88-209ENST00000574855 LOC110117498A0A087WWA1 95 aa1.68□□□□□ -2.14
NUP88-209ENST00000574855 TRBV7-4A0A0J9YYF1 115 aa1.68□□□□□ -2.14
NUP88-209ENST00000574855 UQCR11O14957 56 aa1.68□□□□□ -2.14
NUP88-209ENST00000574855 IGFL1Q6UW32 110 aa1.68□□□□□ -2.14
NUP88-209ENST00000574855 ENHOQ6UWT2 76 aa1.68□□□□□ -2.14
NUP88-209ENST00000574855 UNQ6190/PRO20217Q6UXQ8 127 aa1.68□□□□□ -2.14
NUP88-209ENST00000574855 COA5Q86WW8 74 aa1.68□□□□□ -2.14
NUP88-209ENST00000574855 LINC00208Q96KT6 92 aa1.68□□□□□ -2.14
NUP88-209ENST00000574855 UBL5Q9BZL1 73 aa1.68□□□□□ -2.14
NUP88-209ENST00000574855 PLAC8Q9NZF1 115 aa1.68□□□□□ -2.14
NUP88-209ENST00000574855 KALRNO60229 2985 aa1.68□□□□□ -2.14
NUP88-209ENST00000574855 ANKRD17O75179 2603 aaKnown RBP1.68□□□□□ -2.14
NUP88-209ENST00000574855 SMG1Q96Q15 3661 aaKnown RBP1.67□□□□□ -2.14
NUP88-209ENST00000574855 IGKV2-24A0A0C4DH68 120 aa1.67□□□□□ -2.14
NUP88-209ENST00000574855 M0R2N4 97 aa1.67□□□□□ -2.14
NUP88-209ENST00000574855 NCR3O14931 201 aa1.67□□□□□ -2.14
NUP88-209ENST00000574855 COX7BP24311 80 aa1.67□□□□□ -2.14
NUP88-209ENST00000574855 LINC01556Q5JQF7 62 aa1.67□□□□□ -2.14
NUP88-209ENST00000574855 KRTAP5-7Q6L8G8 165 aa1.67□□□□□ -2.14
NUP88-209ENST00000574855 LINC00575Q6W349 94 aa1.67□□□□□ -2.14
NUP88-209ENST00000574855 Q6ZRN7 208 aaPredicted RBP1.67□□□□□ -2.14
NUP88-209ENST00000574855 OBSCN-AS1Q96MR7 158 aa1.67□□□□□ -2.14
NUP88-209ENST00000574855 Q96NJ1 140 aa1.67□□□□□ -2.14
NUP88-209ENST00000574855 SPRR4Q96PI1 79 aa1.67□□□□□ -2.14
NUP88-209ENST00000574855 USP9YO00507 2555 aaPredicted RBP1.67□□□□□ -2.14
NUP88-209ENST00000574855 USP9XQ93008 2570 aaPredicted RBP1.67□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 76.7 ms