RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 NOP10Q9NPE3 64 aaKnown RBP1.76□□□□□ -2.13
VPS35-208ENST00000568612 MAP1BP46821 2468 aaKnown RBP1.76□□□□□ -2.13
VPS35-208ENST00000568612 CEP250Q9BV73 2442 aa1.76□□□□□ -2.13
VPS35-208ENST00000568612 GPR179Q6PRD1 2367 aa1.75□□□□□ -2.13
VPS35-208ENST00000568612 TRIOBPQ9H2D6 2365 aa1.75□□□□□ -2.13
VPS35-208ENST00000568612 H3BUX3 64 aa1.75□□□□□ -2.13
VPS35-208ENST00000568612 SPRR1BP22528 89 aa1.75□□□□□ -2.13
VPS35-208ENST00000568612 H1FX-AS1Q4G0G2 97 aa1.75□□□□□ -2.13
VPS35-208ENST00000568612 PRO2289Q9P1D8 64 aa1.75□□□□□ -2.13
VPS35-208ENST00000568612 FRYLO94915 3013 aa1.75□□□□□ -2.13
VPS35-208ENST00000568612 DMDP11532 3685 aa1.75□□□□□ -2.13
VPS35-208ENST00000568612 TPRP12270 2363 aaKnown RBP1.74□□□□□ -2.13
VPS35-208ENST00000568612 LYNX1P0DP58 116 aa1.74□□□□□ -2.13
VPS35-208ENST00000568612 KRTAP10-8P60410 259 aa1.74□□□□□ -2.13
VPS35-208ENST00000568612 DNAH14Q0VDD8 3507 aa1.74□□□□□ -2.13
VPS35-208ENST00000568612 CACNA1EQ15878 2313 aa1.73□□□□□ -2.13
VPS35-208ENST00000568612 DEFB136Q30KP8 78 aa1.73□□□□□ -2.13
VPS35-208ENST00000568612 BRD3OSQ6XYD6 125 aa1.73□□□□□ -2.13
VPS35-208ENST00000568612 COX6B2Q6YFQ2 88 aa1.73□□□□□ -2.13
VPS35-208ENST00000568612 DEFB119Q8N690 84 aa1.73□□□□□ -2.13
VPS35-208ENST00000568612 AKAP9Q99996 3911 aa1.73□□□□□ -2.13
VPS35-208ENST00000568612 K7EIL1 84 aa1.72□□□□□ -2.13
VPS35-208ENST00000568612 LY6EQ16553 131 aa1.72□□□□□ -2.13
VPS35-208ENST00000568612 SPACA4Q8TDM5 124 aa1.72□□□□□ -2.13
VPS35-208ENST00000568612 PRO0255Q9UI72 69 aa1.72□□□□□ -2.13
VPS35-208ENST00000568612 WDFY4Q6ZS81 3184 aa1.72□□□□□ -2.13
VPS35-208ENST00000568612 DCHS1Q96JQ0 3298 aa1.72□□□□□ -2.13
VPS35-208ENST00000568612 PRUNE2Q8WUY3 3088 aa1.72□□□□□ -2.13
VPS35-208ENST00000568612 ACACAQ13085 2346 aa1.72□□□□□ -2.13
VPS35-208ENST00000568612 SPEGQ15772 3267 aa1.71□□□□□ -2.14
VPS35-208ENST00000568612 AKAP6Q13023 2319 aa1.71□□□□□ -2.14
VPS35-208ENST00000568612 DEFB130BP0DP73 79 aa1.71□□□□□ -2.14
VPS35-208ENST00000568612 DEFB130AP0DP74 79 aa1.71□□□□□ -2.14
VPS35-208ENST00000568612 LELP1Q5T871 98 aa1.71□□□□□ -2.14
VPS35-208ENST00000568612 C10orf95Q9H7T3 257 aa1.71□□□□□ -2.14
VPS35-208ENST00000568612 OTOGQ6ZRI0 2925 aa1.71□□□□□ -2.14
VPS35-208ENST00000568612 TENM2Q9NT68 2774 aa1.7□□□□□ -2.14
VPS35-208ENST00000568612 ZDBF2Q9HCK1 2354 aa1.7□□□□□ -2.14
VPS35-208ENST00000568612 LAMA2P24043 3122 aaKnown RBP1.7□□□□□ -2.14
VPS35-208ENST00000568612 SPTBN4Q9H254 2564 aa1.7□□□□□ -2.14
VPS35-208ENST00000568612 ASH1LQ9NR48 2969 aaKnown RBP1.7□□□□□ -2.14
VPS35-208ENST00000568612 BOD1L1Q8NFC6 3051 aa1.7□□□□□ -2.14
VPS35-208ENST00000568612 PCNX1Q96RV3 2341 aa1.69□□□□□ -2.14
VPS35-208ENST00000568612 TRIOO75962 3097 aa1.69□□□□□ -2.14
VPS35-208ENST00000568612 RPL37P61927 97 aaKnown RBP1.69□□□□□ -2.14
VPS35-208ENST00000568612 KALRNO60229 2985 aa1.69□□□□□ -2.14
VPS35-208ENST00000568612 NCOR1O75376 2440 aa1.69□□□□□ -2.14
VPS35-208ENST00000568612 LAMA3Q16787 3333 aa1.69□□□□□ -2.14
VPS35-208ENST00000568612 ZFHX4Q86UP3 3567 aa1.69□□□□□ -2.14
VPS35-208ENST00000568612 RP1L1Q8IWN7 2480 aaPredicted RBP1.68□□□□□ -2.14
VPS35-208ENST00000568612 SPTA1P02549 2419 aa1.68□□□□□ -2.14
VPS35-208ENST00000568612 KRTAP5-8O75690 187 aa1.68□□□□□ -2.14
VPS35-208ENST00000568612 PLAC4Q8WY50 150 aa1.68□□□□□ -2.14
VPS35-208ENST00000568612 WDFY3Q8IZQ1 3526 aa1.68□□□□□ -2.14
VPS35-208ENST00000568612 FRYQ5TBA9 3013 aa1.68□□□□□ -2.14
VPS35-208ENST00000568612 PIEZO2Q9H5I5 2752 aa1.68□□□□□ -2.14
VPS35-208ENST00000568612 APC2O95996 2303 aa1.67□□□□□ -2.14
VPS35-208ENST00000568612 PTPRZ1P23471 2315 aaPredicted RBP1.67□□□□□ -2.14
VPS35-208ENST00000568612 SPENQ96T58 3664 aaKnown RBP1.67□□□□□ -2.14
VPS35-208ENST00000568612 EP300Q09472 2414 aaPredicted RBP1.67□□□□□ -2.14
VPS35-208ENST00000568612 FREM2Q5SZK8 3169 aa1.67□□□□□ -2.14
VPS35-208ENST00000568612 A0A096LPF7 62 aa1.67□□□□□ -2.14
VPS35-208ENST00000568612 PRLHP81277 87 aa1.67□□□□□ -2.14
VPS35-208ENST00000568612 MAP1AP78559 2803 aaPredicted RBP1.67□□□□□ -2.14
VPS35-208ENST00000568612 AKAP13Q12802 2813 aa1.67□□□□□ -2.14
VPS35-208ENST00000568612 NOTCH2Q04721 2471 aa1.67□□□□□ -2.14
VPS35-208ENST00000568612 HTTP42858 3142 aa1.67□□□□□ -2.14
VPS35-208ENST00000568612 C2CD3Q4AC94 2353 aa1.66□□□□□ -2.14
VPS35-208ENST00000568612 FLG2Q5D862 2391 aaPredicted RBP1.66□□□□□ -2.14
VPS35-208ENST00000568612 DSPP15924 2871 aaKnown RBP1.66□□□□□ -2.14
VPS35-208ENST00000568612 CELSR2Q9HCU4 2923 aa1.66□□□□□ -2.14
VPS35-208ENST00000568612 BRCA2P51587 3418 aa1.66□□□□□ -2.14
VPS35-208ENST00000568612 INE1O15225 51 aa1.66□□□□□ -2.14
VPS35-208ENST00000568612 Q6ZRN7 208 aaPredicted RBP1.66□□□□□ -2.14
VPS35-208ENST00000568612 R4GN34 69 aa1.66□□□□□ -2.14
VPS35-208ENST00000568612 C5orf42Q9H799 3197 aa1.65□□□□□ -2.14
VPS35-208ENST00000568612 NBPF19A0A087WUL8 3843 aa1.65□□□□□ -2.15
VPS35-208ENST00000568612 SPINK1P00995 79 aa1.65□□□□□ -2.15
VPS35-208ENST00000568612 C10orf99Q6UWK7 81 aa1.65□□□□□ -2.15
VPS35-208ENST00000568612 LAMA1P25391 3075 aa1.65□□□□□ -2.15
VPS35-208ENST00000568612 GVINP1Q7Z2Y8 2422 aa1.65□□□□□ -2.15
VPS35-208ENST00000568612 VCANP13611 3396 aa1.64□□□□□ -2.15
VPS35-208ENST00000568612 ITPR1Q14643 2758 aa1.64□□□□□ -2.15
VPS35-208ENST00000568612 ABCA2Q9BZC7 2435 aa1.64□□□□□ -2.15
VPS35-208ENST00000568612 ROS1P08922 2347 aa1.63□□□□□ -2.15
VPS35-208ENST00000568612 DEFB123Q8N688 67 aa1.63□□□□□ -2.15
VPS35-208ENST00000568612 DNAH1Q9P2D7 4330 aa1.63□□□□□ -2.15
VPS35-208ENST00000568612 CSMD1Q96PZ7 3565 aa1.63□□□□□ -2.15
VPS35-208ENST00000568612 NCOR2Q9Y618 2525 aa1.62□□□□□ -2.15
VPS35-208ENST00000568612 VPS13DQ5THJ4 4388 aa1.62□□□□□ -2.15
VPS35-208ENST00000568612 SMG1Q96Q15 3661 aaKnown RBP1.62□□□□□ -2.15
VPS35-208ENST00000568612 COL12A1Q99715 3063 aa1.61□□□□□ -2.15
VPS35-208ENST00000568612 CRYBG3Q68DQ2 2970 aa1.61□□□□□ -2.15
VPS35-208ENST00000568612 KRTAP5-5Q701N2 237 aaPredicted RBP1.61□□□□□ -2.15
VPS35-208ENST00000568612 KRTAP13-1Q8IUC0 172 aa1.61□□□□□ -2.15
VPS35-208ENST00000568612 UBE2DNLQ8IWF7 75 aa1.61□□□□□ -2.15
VPS35-208ENST00000568612 S4R3F8 94 aa1.61□□□□□ -2.15
VPS35-208ENST00000568612 LOC400499M0QZD8 3231 aa1.61□□□□□ -2.15
VPS35-208ENST00000568612 DMXL2Q8TDJ6 3036 aa1.61□□□□□ -2.15
VPS35-208ENST00000568612 CDH23Q9H251 3354 aa1.61□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 810.9 ms