RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 CFC1P0CG37 223 aa8.38□□□□□ -1.07
VPS39-210ENST00000568357 hADV29S1A0JD25 119 aa8.37□□□□□ -1.07
VPS39-210ENST00000568357 CD164Q04900 197 aa8.36□□□□□ -1.07
VPS39-210ENST00000568357 H7C2G1 150 aa8.35□□□□□ -1.07
VPS39-210ENST00000568357 PYY3Q5JQD4 70 aa8.35□□□□□ -1.07
VPS39-210ENST00000568357 Q6ZQY7 126 aa8.35□□□□□ -1.07
VPS39-210ENST00000568357 LIMD2Q9BT23 127 aa8.34□□□□□ -1.07
VPS39-210ENST00000568357 BVES-AS1Q5T3Y7 98 aa8.33□□□□□ -1.08
VPS39-210ENST00000568357 RAB37Q96AX2 223 aa8.33□□□□□ -1.08
VPS39-210ENST00000568357 TMA7Q9Y2S6 64 aaKnown RBP8.33□□□□□ -1.08
VPS39-210ENST00000568357 A0A0B4J2C4 111 aa8.32□□□□□ -1.08
VPS39-210ENST00000568357 CEND1Q8N111 149 aa8.32□□□□□ -1.08
VPS39-210ENST00000568357 LCE2BO14633 110 aa8.3□□□□□ -1.08
VPS39-210ENST00000568357 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.3□□□□□ -1.08
VPS39-210ENST00000568357 Q5XG85 94 aa8.29□□□□□ -1.08
VPS39-210ENST00000568357 F8WEM9 126 aa8.28□□□□□ -1.08
VPS39-210ENST00000568357 FXYD2P54710 66 aa8.28□□□□□ -1.08
VPS39-210ENST00000568357 ASB16-AS1Q495Z4 193 aa8.28□□□□□ -1.08
VPS39-210ENST00000568357 SMCPP49901 116 aaPredicted RBP8.27□□□□□ -1.09
VPS39-210ENST00000568357 OCIAD2Q56VL3 154 aa8.27□□□□□ -1.09
VPS39-210ENST00000568357 FAM218AQ96MZ4 157 aa8.27□□□□□ -1.09
VPS39-210ENST00000568357 PRO1854Q9UHT4 67 aa8.27□□□□□ -1.09
VPS39-210ENST00000568357 IGLV8-61A0A075B6I0 122 aa8.26□□□□□ -1.09
VPS39-210ENST00000568357 XP32Q5T750 250 aa8.26□□□□□ -1.09
VPS39-210ENST00000568357 C1orf195Q5TG92 126 aa8.26□□□□□ -1.09
VPS39-210ENST00000568357 H0YGX0 51 aa8.25□□□□□ -1.09
VPS39-210ENST00000568357 TMEM238LA0A1B0GVL6 79 aa8.24□□□□□ -1.09
VPS39-210ENST00000568357 A6NJY4 79 aa8.24□□□□□ -1.09
VPS39-210ENST00000568357 Q6JHZ5 121 aa8.24□□□□□ -1.09
VPS39-210ENST00000568357 IGFL1Q6UW32 110 aa8.24□□□□□ -1.09
VPS39-210ENST00000568357 PPDPFLQ8WWR9 84 aa8.24□□□□□ -1.09
VPS39-210ENST00000568357 SNHG12Q9BXW3 62 aa8.24□□□□□ -1.09
VPS39-210ENST00000568357 C9orf92A6NGG3 77 aa8.23□□□□□ -1.09
VPS39-210ENST00000568357 SEC61BP60468 96 aaKnown RBP8.23□□□□□ -1.09
VPS39-210ENST00000568357 KRTAP4-1Q9BYQ7 146 aa8.23□□□□□ -1.09
VPS39-210ENST00000568357 HSD52Q0P140 79 aa8.21□□□□□ -1.1
VPS39-210ENST00000568357 CLEC2BQ92478 149 aa8.21□□□□□ -1.1
VPS39-210ENST00000568357 H3BUT2 72 aa8.2□□□□□ -1.1
VPS39-210ENST00000568357 SNCGO76070 127 aa8.2□□□□□ -1.1
VPS39-210ENST00000568357 TCL1BO95988 128 aa8.2□□□□□ -1.1
VPS39-210ENST00000568357 TRBV7-7A0A0K0K1E9 115 aa8.19□□□□□ -1.1
VPS39-210ENST00000568357 K7ERJ3 54 aa8.19□□□□□ -1.1
VPS39-210ENST00000568357 TRIAP1O43715 76 aa8.19□□□□□ -1.1
VPS39-210ENST00000568357 UQCR10Q9UDW1 63 aa8.19□□□□□ -1.1
VPS39-210ENST00000568357 NDUFV3P56181 108 aaKnown RBP8.17□□□□□ -1.1
VPS39-210ENST00000568357 A0A1B0GX51 115 aa8.16□□□□□ -1.1
VPS39-210ENST00000568357 PSMB2P49721 201 aa8.13□□□□□ -1.11
VPS39-210ENST00000568357 FABP2P12104 132 aa8.12□□□□□ -1.11
VPS39-210ENST00000568357 PCOTHQ58A44 107 aa8.12□□□□□ -1.11
VPS39-210ENST00000568357 H3BMG7 143 aa8.11□□□□□ -1.11
VPS39-210ENST00000568357 GHRHP01286 108 aa8.1□□□□□ -1.11
VPS39-210ENST00000568357 Q6Q795 121 aa8.1□□□□□ -1.11
VPS39-210ENST00000568357 COX6CP09669 75 aa8.08□□□□□ -1.12
VPS39-210ENST00000568357 TEN1Q86WV5 123 aa8.08□□□□□ -1.12
VPS39-210ENST00000568357 LST1O00453 97 aa8.07□□□□□ -1.12
VPS39-210ENST00000568357 ORMDL1Q9P0S3 153 aa8.07□□□□□ -1.12
VPS39-210ENST00000568357 DNAL4O96015 105 aa8.06□□□□□ -1.12
VPS39-210ENST00000568357 RPL37P61927 97 aaKnown RBP8.05□□□□□ -1.12
VPS39-210ENST00000568357 A0A087WSZ3 146 aa8.04□□□□□ -1.12
VPS39-210ENST00000568357 A0A1W2PNM2 257 aa8.04□□□□□ -1.12
VPS39-210ENST00000568357 SS18L2Q9UHA2 77 aa8.03□□□□□ -1.12
VPS39-210ENST00000568357 A0A1B0GV72 72 aa8.02□□□□□ -1.13
VPS39-210ENST00000568357 H3BQ85 93 aa8.02□□□□□ -1.13
VPS39-210ENST00000568357 TMEM256-PLSCR3K7ERE1 68 aa8.02□□□□□ -1.13
VPS39-210ENST00000568357 SCGB1C2P0DMR2 95 aa8.02□□□□□ -1.13
VPS39-210ENST00000568357 TRACP01848 142 aa8.01□□□□□ -1.13
VPS39-210ENST00000568357 ANKRD29Q8N6D5 301 aa8.01□□□□□ -1.13
VPS39-210ENST00000568357 OBSCN-AS1Q96MR7 158 aa8.01□□□□□ -1.13
VPS39-210ENST00000568357 LCE2CQ5TA81 110 aa8□□□□□ -1.13
VPS39-210ENST00000568357 Q96NJ1 140 aa8□□□□□ -1.13
VPS39-210ENST00000568357 KRTAP9-7A8MTY7 169 aa7.99□□□□□ -1.13
VPS39-210ENST00000568357 SMIM6P0DI80 62 aa7.99□□□□□ -1.13
VPS39-210ENST00000568357 KRTAP19-2Q3LHN2 52 aa7.99□□□□□ -1.13
VPS39-210ENST00000568357 LOC100996750A0A140TA64 210 aa7.98□□□□□ -1.13
VPS39-210ENST00000568357 UBE2V1Q13404 147 aa7.98□□□□□ -1.13
VPS39-210ENST00000568357 KRTAP4-6Q9BYQ5 205 aa7.98□□□□□ -1.13
VPS39-210ENST00000568357 TRBV7-4A0A0J9YYF1 115 aa7.96□□□□□ -1.14
VPS39-210ENST00000568357 M0R143 59 aa7.96□□□□□ -1.14
VPS39-210ENST00000568357 NAA38Q9BRA0 125 aaKnown RBP7.95□□□□□ -1.14
VPS39-210ENST00000568357 Q75L30 129 aa7.94□□□□□ -1.14
VPS39-210ENST00000568357 CCKP06307 115 aa7.93□□□□□ -1.14
VPS39-210ENST00000568357 BAALC-AS2P0C853 105 aa7.93□□□□□ -1.14
VPS39-210ENST00000568357 LOC105371267A0A1B0GV96 52 aa7.92□□□□□ -1.14
VPS39-210ENST00000568357 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.91□□□□□ -1.14
VPS39-210ENST00000568357 RBM3P98179 157 aaKnown RBP7.91□□□□□ -1.14
VPS39-210ENST00000568357 ATP11AUNQ6ZP68 121 aa7.9□□□□□ -1.14
VPS39-210ENST00000568357 DEFB116Q30KQ4 102 aa7.89□□□□□ -1.15
VPS39-210ENST00000568357 LINC00472Q9H8W2 130 aa7.89□□□□□ -1.15
VPS39-210ENST00000568357 TSTD3H0UI37 97 aa7.88□□□□□ -1.15
VPS39-210ENST00000568357 IGKV4-1P06312 121 aa7.88□□□□□ -1.15
VPS39-210ENST00000568357 DSCR10P59022 87 aa7.88□□□□□ -1.15
VPS39-210ENST00000568357 ATXN8Q156A1 80 aa7.88□□□□□ -1.15
VPS39-210ENST00000568357 C20orf166-AS1Q96NR2 134 aa7.88□□□□□ -1.15
VPS39-210ENST00000568357 SIGMAR1Q99720 223 aa7.88□□□□□ -1.15
VPS39-210ENST00000568357 MT1HP80294 61 aa7.87□□□□□ -1.15
VPS39-210ENST00000568357 DSCR8Q96T75 97 aa7.87□□□□□ -1.15
VPS39-210ENST00000568357 VPS25Q9BRG1 176 aa7.87□□□□□ -1.15
VPS39-210ENST00000568357 A8MUU9 505 aa7.86□□□□□ -1.15
VPS39-210ENST00000568357 BATFQ16520 125 aa7.85□□□□□ -1.15
VPS39-210ENST00000568357 NOTCH2NLQ7Z3S9 236 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms