RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, human

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-222	ENST00000568232		A0A1B0GWB2	263 aa		6.31	□□□□□ -1.4
CLK3-222	ENST00000568232	PFN2	P35080	140 aa		6.31	□□□□□ -1.4
CLK3-222	ENST00000568232	RPL24	P83731	157 aa	Known RBP	6.31	□□□□□ -1.4
CLK3-222	ENST00000568232	MOBP	Q13875	183 aa		6.31	□□□□□ -1.4
CLK3-222	ENST00000568232	LYRM7	Q5U5X0	104 aa		6.31	□□□□□ -1.4
CLK3-222	ENST00000568232	SFTA2	Q6UW10	78 aa		6.31	□□□□□ -1.4
CLK3-222	ENST00000568232		A0A0J9YXY3	114 aa		6.3	□□□□□ -1.4
CLK3-222	ENST00000568232		A0A1B0GV72	72 aa		6.3	□□□□□ -1.4
CLK3-222	ENST00000568232	TIMM17B	O60830	172 aa		6.3	□□□□□ -1.4
CLK3-222	ENST00000568232	TTTY13	Q9BZ97	58 aa		6.3	□□□□□ -1.4
CLK3-222	ENST00000568232	IFITM1	P13164	125 aa		6.29	□□□□□ -1.4
CLK3-222	ENST00000568232	SMCR5	Q8TEV8	140 aa		6.29	□□□□□ -1.4
CLK3-222	ENST00000568232	SND1-IT1	Q9HBX3	110 aa		6.29	□□□□□ -1.4
CLK3-222	ENST00000568232	NHP2	Q9NX24	153 aa	Known RBP	6.29	□□□□□ -1.4
CLK3-222	ENST00000568232		A0A1W2PPM0	123 aa		6.28	□□□□□ -1.4
CLK3-222	ENST00000568232	SPINK8	P0C7L1	97 aa		6.28	□□□□□ -1.4
CLK3-222	ENST00000568232	FXYD2	P54710	66 aa		6.28	□□□□□ -1.4
CLK3-222	ENST00000568232	HERV-K104	P63124	156 aa		6.28	□□□□□ -1.4
CLK3-222	ENST00000568232		H3BUT2	72 aa		6.27	□□□□□ -1.41
CLK3-222	ENST00000568232	LINC00483	Q53H64	154 aa		6.27	□□□□□ -1.41
CLK3-222	ENST00000568232	GAGE2A	Q6NT46	116 aa		6.27	□□□□□ -1.41
CLK3-222	ENST00000568232	IGLV5-39	A0A0G2JS06	123 aa		6.26	□□□□□ -1.41
CLK3-222	ENST00000568232		K7EP34	96 aa		6.26	□□□□□ -1.41
CLK3-222	ENST00000568232	SSBP3-AS1	Q7Z2R9	100 aa		6.26	□□□□□ -1.41
CLK3-222	ENST00000568232	SPANXD	Q9BXN6	97 aa		6.26	□□□□□ -1.41
CLK3-222	ENST00000568232	SPANXC	Q9NY87	97 aa		6.26	□□□□□ -1.41
CLK3-222	ENST00000568232	RAB37	Q96AX2	223 aa		6.25	□□□□□ -1.41
CLK3-222	ENST00000568232	KRTAP9-8	Q9BYQ0	159 aa		6.25	□□□□□ -1.41
CLK3-222	ENST00000568232	SPCS1	Q9Y6A9	102 aa		6.25	□□□□□ -1.41
CLK3-222	ENST00000568232	TRBV20-1	A0A075B6N2	111 aa		6.24	□□□□□ -1.41
CLK3-222	ENST00000568232		A0A0B4J2C4	111 aa		6.24	□□□□□ -1.41
CLK3-222	ENST00000568232	TSPEAR-AS2	P59090	65 aa		6.24	□□□□□ -1.41
CLK3-222	ENST00000568232	MTURN	Q8N3F0	131 aa		6.24	□□□□□ -1.41
CLK3-222	ENST00000568232	VPS25	Q9BRG1	176 aa		6.24	□□□□□ -1.41
CLK3-222	ENST00000568232	PRO1854	Q9UHT4	67 aa		6.24	□□□□□ -1.41
CLK3-222	ENST00000568232		F8W1H4	67 aa		6.23	□□□□□ -1.41
CLK3-222	ENST00000568232	CFC1	P0CG37	223 aa		6.23	□□□□□ -1.41
CLK3-222	ENST00000568232	C5orf47	Q569G3	176 aa		6.22	□□□□□ -1.41
CLK3-222	ENST00000568232	ZNF625	Q96I27	306 aa	Predicted RBP	6.22	□□□□□ -1.41
CLK3-222	ENST00000568232	ERG28	Q9UKR5	140 aa		6.22	□□□□□ -1.41
CLK3-222	ENST00000568232	ERC2-IT1	O76042	136 aa		6.21	□□□□□ -1.42
CLK3-222	ENST00000568232	MUSTN1	Q8IVN3	82 aa		6.21	□□□□□ -1.42
CLK3-222	ENST00000568232		K7ERJ3	54 aa		6.2	□□□□□ -1.42
CLK3-222	ENST00000568232		K7ERU9	68 aa		6.2	□□□□□ -1.42
CLK3-222	ENST00000568232	IGLV6-57	P01721	117 aa		6.2	□□□□□ -1.42
CLK3-222	ENST00000568232	COX6C	P09669	75 aa		6.2	□□□□□ -1.42
CLK3-222	ENST00000568232	SPRR1A	P35321	89 aa		6.19	□□□□□ -1.42
CLK3-222	ENST00000568232	OCIAD2	Q56VL3	154 aa		6.19	□□□□□ -1.42
CLK3-222	ENST00000568232		Q6Q795	121 aa		6.19	□□□□□ -1.42
CLK3-222	ENST00000568232	LITAF	Q99732	161 aa		6.19	□□□□□ -1.42
CLK3-222	ENST00000568232	ETDC	A0A1B0GVM5	59 aa		6.18	□□□□□ -1.42
CLK3-222	ENST00000568232		J3QR89	54 aa		6.18	□□□□□ -1.42
CLK3-222	ENST00000568232	PRY	O14603	147 aa		6.18	□□□□□ -1.42
CLK3-222	ENST00000568232	SCGB1C2	P0DMR2	95 aa		6.18	□□□□□ -1.42
CLK3-222	ENST00000568232	MEIG1	Q5JSS6	88 aa		6.18	□□□□□ -1.42
CLK3-222	ENST00000568232	C9orf153	Q5TBE3	101 aa		6.18	□□□□□ -1.42
CLK3-222	ENST00000568232	COX17	Q14061	63 aa		6.17	□□□□□ -1.42
CLK3-222	ENST00000568232	LOC107984156	A0A0G2JMH3	177 aa		6.16	□□□□□ -1.42
CLK3-222	ENST00000568232	PSMB2	P49721	201 aa		6.16	□□□□□ -1.42
CLK3-222	ENST00000568232	RPL37	P61927	97 aa	Known RBP	6.16	□□□□□ -1.42
CLK3-222	ENST00000568232	HRCT1	Q6UXD1	115 aa		6.16	□□□□□ -1.42
CLK3-222	ENST00000568232	ARL17A	Q8IVW1	177 aa		6.16	□□□□□ -1.42
CLK3-222	ENST00000568232	KCNQ1DN	Q9H478	68 aa		6.16	□□□□□ -1.42
CLK3-222	ENST00000568232	TRAV13-2	A0A0B4J235	113 aa		6.15	□□□□□ -1.42
CLK3-222	ENST00000568232	NCR3	O14931	201 aa		6.15	□□□□□ -1.42
CLK3-222	ENST00000568232		Q1RN00	199 aa		6.15	□□□□□ -1.42
CLK3-222	ENST00000568232	LINC00308	Q8TCZ7	52 aa		6.15	□□□□□ -1.42
CLK3-222	ENST00000568232		A0A0U1RRA0	63 aa		6.14	□□□□□ -1.43
CLK3-222	ENST00000568232		B5MCH6	92 aa		6.14	□□□□□ -1.43
CLK3-222	ENST00000568232	ADAMTSL4-AS1	Q5T5F5	129 aa		6.14	□□□□□ -1.43
CLK3-222	ENST00000568232	NAA38	Q9BRA0	125 aa	Known RBP	6.14	□□□□□ -1.43
CLK3-222	ENST00000568232		Q9BRP9	147 aa		6.14	□□□□□ -1.43
CLK3-222	ENST00000568232	ATXN8	Q156A1	80 aa		6.13	□□□□□ -1.43
CLK3-222	ENST00000568232		H3BMG7	143 aa		6.12	□□□□□ -1.43
CLK3-222	ENST00000568232	LINC00158	P58513	81 aa		6.12	□□□□□ -1.43
CLK3-222	ENST00000568232	LIMD2	Q9BT23	127 aa		6.12	□□□□□ -1.43
CLK3-222	ENST00000568232	TRBV10-3	A0A0K0K1G6	114 aa		6.11	□□□□□ -1.43
CLK3-222	ENST00000568232	MT2A	P02795	61 aa		6.1	□□□□□ -1.43
CLK3-222	ENST00000568232	NDUFC2	O95298	119 aa		6.08	□□□□□ -1.44
CLK3-222	ENST00000568232	TCL1B	O95988	128 aa		6.08	□□□□□ -1.44
CLK3-222	ENST00000568232	KRTAP6-3	Q3LI67	103 aa		6.08	□□□□□ -1.44
CLK3-222	ENST00000568232	MIR7-3HG	Q8N6C7	128 aa		6.08	□□□□□ -1.44
CLK3-222	ENST00000568232		H0YGX0	51 aa		6.07	□□□□□ -1.44
CLK3-222	ENST00000568232		H7C2G1	150 aa		6.07	□□□□□ -1.44
CLK3-222	ENST00000568232	ST20-AS1	Q8NBB2	130 aa		6.07	□□□□□ -1.44
CLK3-222	ENST00000568232	PRO0461	Q9UI25	63 aa		6.07	□□□□□ -1.44
CLK3-222	ENST00000568232	TRBV10-2	A0A0K0K1G8	114 aa		6.06	□□□□□ -1.44
CLK3-222	ENST00000568232		H3BT86	120 aa		6.06	□□□□□ -1.44
CLK3-222	ENST00000568232	TRIAP1	O43715	76 aa		6.06	□□□□□ -1.44
CLK3-222	ENST00000568232	SNCG	O76070	127 aa		6.06	□□□□□ -1.44
CLK3-222	ENST00000568232	MT1F	P04733	61 aa		6.06	□□□□□ -1.44
CLK3-222	ENST00000568232		Q6ZRX8	168 aa		6.06	□□□□□ -1.44
CLK3-222	ENST00000568232	TEN1	Q86WV5	123 aa		6.06	□□□□□ -1.44
CLK3-222	ENST00000568232	LST1	O00453	97 aa		6.05	□□□□□ -1.44
CLK3-222	ENST00000568232	TRAC	P01848	142 aa		6.05	□□□□□ -1.44
CLK3-222	ENST00000568232	NPC2	P61916	151 aa		6.05	□□□□□ -1.44
CLK3-222	ENST00000568232	SOSTDC1	Q6X4U4	206 aa		6.05	□□□□□ -1.44
CLK3-222	ENST00000568232	PPDPFL	Q8WWR9	84 aa		6.05	□□□□□ -1.44
CLK3-222	ENST00000568232	ETDB	Q3ZM63	59 aa		6.04	□□□□□ -1.44
CLK3-222	ENST00000568232	ANKRD29	Q8N6D5	301 aa		6.04	□□□□□ -1.44

Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms