RNA–Protein interactions for RNA: ENST00000567320.1

CDH1-211, Transcript of cadherin 1, humanhuman

TSL 3

Gene CDH1, Length 352 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-211ENST00000567320 VAMP8Q9BV40 100 aa-0.56□□□□□ -2.5
CDH1-211ENST00000567320 PRO3102Q9H379 93 aa-0.56□□□□□ -2.5
CDH1-211ENST00000567320 AP4S1Q9Y587 144 aa-0.56□□□□□ -2.5
CDH1-211ENST00000567320 IER3IP1Q9Y5U9 82 aa-0.56□□□□□ -2.5
CDH1-211ENST00000567320 LY75O60449 1722 aa-0.56□□□□□ -2.5
CDH1-211ENST00000567320 DDX60LQ5H9U9 1706 aaKnown RBP-0.56□□□□□ -2.5
CDH1-211ENST00000567320 COL6A5A8TX70 2615 aa-0.56□□□□□ -2.5
CDH1-211ENST00000567320 DYNC2H1Q8NCM8 4307 aaKnown RBP-0.57□□□□□ -2.5
CDH1-211ENST00000567320 NEXMIFQ5QGS0 1516 aa-0.57□□□□□ -2.5
CDH1-211ENST00000567320 ITSN1Q15811 1721 aa-0.57□□□□□ -2.5
CDH1-211ENST00000567320 SRCAPQ6ZRS2 3230 aa-0.57□□□□□ -2.5
CDH1-211ENST00000567320 USP9XQ93008 2570 aaPredicted RBP-0.57□□□□□ -2.5
CDH1-211ENST00000567320 TRAV21A0A0B4J279 112 aa-0.57□□□□□ -2.5
CDH1-211ENST00000567320 LCE6AA0A183 80 aa-0.57□□□□□ -2.5
CDH1-211ENST00000567320 LYNX1G3V0Z9 82 aa-0.57□□□□□ -2.5
CDH1-211ENST00000567320 H3BQ15 152 aa-0.57□□□□□ -2.5
CDH1-211ENST00000567320 CORTO00230 105 aa-0.57□□□□□ -2.5
CDH1-211ENST00000567320 DLEU1O43261 78 aa-0.57□□□□□ -2.5
CDH1-211ENST00000567320 S100A1P23297 94 aa-0.57□□□□□ -2.5
CDH1-211ENST00000567320 GNG4P50150 75 aa-0.57□□□□□ -2.5
CDH1-211ENST00000567320 KRTDAPP60985 99 aa-0.57□□□□□ -2.5
CDH1-211ENST00000567320 CCDC58Q4VC31 144 aa-0.57□□□□□ -2.5
CDH1-211ENST00000567320 CLPSL2Q6UWE3 100 aa-0.57□□□□□ -2.5
CDH1-211ENST00000567320 WFDC9Q8NEX5 89 aa-0.57□□□□□ -2.5
CDH1-211ENST00000567320 GAFA1Q96PS6 74 aa-0.57□□□□□ -2.5
CDH1-211ENST00000567320 FANCAO15360 1455 aa-0.57□□□□□ -2.5
CDH1-211ENST00000567320 ZC3H13Q5T200 1668 aaKnown RBP-0.57□□□□□ -2.5
CDH1-211ENST00000567320 RNF17Q9BXT8 1623 aaKnown RBP-0.57□□□□□ -2.5
CDH1-211ENST00000567320 NBEAL2Q6ZNJ1 2754 aa-0.57□□□□□ -2.5
CDH1-211ENST00000567320 FAM186AA6NE01 2351 aa-0.57□□□□□ -2.5
CDH1-211ENST00000567320 ARFGEF2Q9Y6D5 1785 aa-0.57□□□□□ -2.5
CDH1-211ENST00000567320 RICTORQ6R327 1708 aa-0.58□□□□□ -2.5
CDH1-211ENST00000567320 ANKRD26Q9UPS8 1709 aa-0.58□□□□□ -2.5
CDH1-211ENST00000567320 EPRSP07814 1512 aaKnown RBP-0.58□□□□□ -2.5
CDH1-211ENST00000567320 KIF1AQ12756 1690 aa-0.58□□□□□ -2.5
CDH1-211ENST00000567320 NCOA2Q15596 1464 aa-0.58□□□□□ -2.5
CDH1-211ENST00000567320 LINC00587B1AMM8 73 aa-0.58□□□□□ -2.5
CDH1-211ENST00000567320 NDUFC1O43677 76 aa-0.58□□□□□ -2.5
CDH1-211ENST00000567320 MPC2O95563 127 aa-0.58□□□□□ -2.5
CDH1-211ENST00000567320 C3orf79P0CE67 100 aa-0.58□□□□□ -2.5
CDH1-211ENST00000567320 RPL13AP3Q6NVV1 102 aa-0.58□□□□□ -2.5
CDH1-211ENST00000567320 MT1MQ8N339 61 aa-0.58□□□□□ -2.5
CDH1-211ENST00000567320 SERP2Q8N6R1 65 aa-0.58□□□□□ -2.5
CDH1-211ENST00000567320 TSC22D3Q99576 134 aa-0.58□□□□□ -2.5
CDH1-211ENST00000567320 PIK3C2BO00750 1634 aa-0.58□□□□□ -2.5
CDH1-211ENST00000567320 SMARCA2P51531 1590 aa-0.58□□□□□ -2.5
CDH1-211ENST00000567320 MAST1Q9Y2H9 1570 aa-0.58□□□□□ -2.5
CDH1-211ENST00000567320 MYH4Q9Y623 1939 aa-0.58□□□□□ -2.5
CDH1-211ENST00000567320 TJP1Q07157 1748 aa-0.58□□□□□ -2.5
CDH1-211ENST00000567320 LRRK2Q5S007 2527 aa-0.59□□□□□ -2.5
CDH1-211ENST00000567320 FYCO1Q9BQS8 1478 aa-0.59□□□□□ -2.5
CDH1-211ENST00000567320 A0A1B0GUT8 65 aa-0.59□□□□□ -2.5
CDH1-211ENST00000567320 ATOX1O00244 68 aa-0.59□□□□□ -2.5
CDH1-211ENST00000567320 MT2AP02795 61 aa-0.59□□□□□ -2.5
CDH1-211ENST00000567320 ACYP1P07311 99 aa-0.59□□□□□ -2.5
CDH1-211ENST00000567320 TNP1P09430 55 aa-0.59□□□□□ -2.5
CDH1-211ENST00000567320 RPL38P63173 70 aaKnown RBP-0.59□□□□□ -2.5
CDH1-211ENST00000567320 NCBP2-AS2Q69YL0 99 aa-0.59□□□□□ -2.5
CDH1-211ENST00000567320 CEP162Q5TB80 1403 aa-0.59□□□□□ -2.5
CDH1-211ENST00000567320 TLN2Q9Y4G6 2542 aa-0.59□□□□□ -2.5
CDH1-211ENST00000567320 LRRIQ1Q96JM4 1722 aa-0.59□□□□□ -2.5
CDH1-211ENST00000567320 CHD7Q9P2D1 2997 aa-0.59□□□□□ -2.5
CDH1-211ENST00000567320 UTP20O75691 2785 aaKnown RBP-0.59□□□□□ -2.5
CDH1-211ENST00000567320 PLIN4Q96Q06 1357 aa-0.59□□□□□ -2.5
CDH1-211ENST00000567320 KIAA0586Q9BVV6 1533 aa-0.59□□□□□ -2.5
CDH1-211ENST00000567320 CFAP43Q8NDM7 1665 aa-0.59□□□□□ -2.5
CDH1-211ENST00000567320 DSPP15924 2871 aaKnown RBP-0.59□□□□□ -2.5
CDH1-211ENST00000567320 DNAH7Q8WXX0 4024 aa-0.6□□□□□ -2.5
CDH1-211ENST00000567320 ATP10BO94823 1461 aa-0.6□□□□□ -2.5
CDH1-211ENST00000567320 ABCC10Q5T3U5 1492 aa-0.6□□□□□ -2.5
CDH1-211ENST00000567320 CEP290O15078 2479 aa-0.6□□□□□ -2.51
CDH1-211ENST00000567320 IGLV5-48A0A075B6I7 105 aa-0.6□□□□□ -2.51
CDH1-211ENST00000567320 UQCRHLA0A096LP55 91 aa-0.6□□□□□ -2.51
CDH1-211ENST00000567320 HMGN2P05204 90 aaKnown RBP-0.6□□□□□ -2.51
CDH1-211ENST00000567320 MT1BP07438 61 aa-0.6□□□□□ -2.51
CDH1-211ENST00000567320 IFI6P09912 130 aa-0.6□□□□□ -2.51
CDH1-211ENST00000567320 FAUP35544 74 aaKnown RBP-0.6□□□□□ -2.51
CDH1-211ENST00000567320 S100A10P60903 97 aa-0.6□□□□□ -2.51
CDH1-211ENST00000567320 PLGLAQ15195 96 aa-0.6□□□□□ -2.51
CDH1-211ENST00000567320 HMGN3Q15651 99 aa-0.6□□□□□ -2.51
CDH1-211ENST00000567320 KRTAP20-1Q3LI63 56 aa-0.6□□□□□ -2.51
CDH1-211ENST00000567320 COL5A1-AS1Q5SY13 56 aa-0.6□□□□□ -2.51
CDH1-211ENST00000567320 ALKAL2Q6UX46 152 aa-0.6□□□□□ -2.51
CDH1-211ENST00000567320 GTF2H5Q6ZYL4 71 aa-0.6□□□□□ -2.51
CDH1-211ENST00000567320 ZNF720Q7Z2F6 126 aa-0.6□□□□□ -2.51
CDH1-211ENST00000567320 C20orf78Q9BR46 151 aa-0.6□□□□□ -2.51
CDH1-211ENST00000567320 C2orf88Q9BSF0 95 aa-0.6□□□□□ -2.51
CDH1-211ENST00000567320 GNG8Q9UK08 70 aa-0.6□□□□□ -2.51
CDH1-211ENST00000567320 SPENQ96T58 3664 aaKnown RBP-0.6□□□□□ -2.51
CDH1-211ENST00000567320 NBEAQ8NFP9 2946 aa-0.6□□□□□ -2.51
CDH1-211ENST00000567320 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP-0.6□□□□□ -2.51
CDH1-211ENST00000567320 FRYQ5TBA9 3013 aa-0.6□□□□□ -2.51
CDH1-211ENST00000567320 RIF1Q5UIP0 2472 aaKnown RBP-0.6□□□□□ -2.51
CDH1-211ENST00000567320 AKAP12Q02952 1782 aa-0.6□□□□□ -2.51
CDH1-211ENST00000567320 NRAPQ86VF7 1730 aa-0.61□□□□□ -2.51
CDH1-211ENST00000567320 CNTLNQ9NXG0 1405 aa-0.61□□□□□ -2.51
CDH1-211ENST00000567320 MMP24-AS1A0A0U1RRL7 71 aa-0.61□□□□□ -2.51
CDH1-211ENST00000567320 NDUFA4O00483 81 aa-0.61□□□□□ -2.51
CDH1-211ENST00000567320 HMGN1P05114 100 aa-0.61□□□□□ -2.51
CDH1-211ENST00000567320 RPS27P42677 84 aaKnown RBP-0.61□□□□□ -2.51
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms