RNA–Protein interactions for RNA: ENST00000566816.1

CLN3-224, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 570 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-224ENST00000566816 LYRM7Q5U5X0 104 aa6.52□□□□□ -1.37
CLN3-224ENST00000566816 SMIM29Q86T20 159 aa6.52□□□□□ -1.37
CLN3-224ENST00000566816 TAX1BP3O14907 124 aa6.51□□□□□ -1.37
CLN3-224ENST00000566816 COL5A1-AS1Q5SY13 56 aa6.51□□□□□ -1.37
CLN3-224ENST00000566816 SPAG11AQ6PDA7 123 aa6.51□□□□□ -1.37
CLN3-224ENST00000566816 DEFB105AQ8NG35 78 aa6.51□□□□□ -1.37
CLN3-224ENST00000566816 TRBV20-1A0A075B6N2 111 aa6.5□□□□□ -1.37
CLN3-224ENST00000566816 DNAL4O96015 105 aa6.5□□□□□ -1.37
CLN3-224ENST00000566816 CLEC2BQ92478 149 aa6.5□□□□□ -1.37
CLN3-224ENST00000566816 C3orf22Q8N5N4 141 aa6.49□□□□□ -1.37
CLN3-224ENST00000566816 IGLV8-61A0A075B6I0 122 aa6.48□□□□□ -1.37
CLN3-224ENST00000566816 PCP4L1A6NKN8 68 aa6.48□□□□□ -1.37
CLN3-224ENST00000566816 TMEM256-PLSCR3K7ERE1 68 aa6.48□□□□□ -1.37
CLN3-224ENST00000566816 ATXN8Q156A1 80 aa6.48□□□□□ -1.37
CLN3-224ENST00000566816 Q8NBF4 154 aa6.48□□□□□ -1.37
CLN3-224ENST00000566816 H3BUT2 72 aa6.47□□□□□ -1.37
CLN3-224ENST00000566816 LINC00304Q8N9R0 145 aa6.47□□□□□ -1.37
CLN3-224ENST00000566816 ORMDL1Q9P0S3 153 aa6.47□□□□□ -1.37
CLN3-224ENST00000566816 HERC1Q15751 4861 aa6.47□□□□□ -1.37
CLN3-224ENST00000566816 IGLV9-49A0A0B4J1Y8 123 aa6.46□□□□□ -1.38
CLN3-224ENST00000566816 A0A1W2PPM0 123 aa6.46□□□□□ -1.38
CLN3-224ENST00000566816 TCL1BO95988 128 aa6.46□□□□□ -1.38
CLN3-224ENST00000566816 RPS29P62273 56 aaKnown RBP6.46□□□□□ -1.38
CLN3-224ENST00000566816 MOBPQ13875 183 aa6.46□□□□□ -1.38
CLN3-224ENST00000566816 F8WEM9 126 aa6.45□□□□□ -1.38
CLN3-224ENST00000566816 SPINK1P00995 79 aa6.45□□□□□ -1.38
CLN3-224ENST00000566816 FABP2P12104 132 aa6.45□□□□□ -1.38
CLN3-224ENST00000566816 CD164Q04900 197 aa6.45□□□□□ -1.38
CLN3-224ENST00000566816 UBE2V1Q13404 147 aa6.45□□□□□ -1.38
CLN3-224ENST00000566816 C4orf48Q5BLP8 95 aa6.45□□□□□ -1.38
CLN3-224ENST00000566816 Q6JHZ5 121 aa6.45□□□□□ -1.38
CLN3-224ENST00000566816 NDUFV3P56181 108 aaKnown RBP6.44□□□□□ -1.38
CLN3-224ENST00000566816 C9orf153Q5TBE3 101 aa6.44□□□□□ -1.38
CLN3-224ENST00000566816 NAA38Q9BRA0 125 aaKnown RBP6.44□□□□□ -1.38
CLN3-224ENST00000566816 BAALC-AS2P0C853 105 aa6.42□□□□□ -1.38
CLN3-224ENST00000566816 Q5XG85 94 aa6.4□□□□□ -1.38
CLN3-224ENST00000566816 H3BMG7 143 aa6.39□□□□□ -1.39
CLN3-224ENST00000566816 Q6Q795 121 aa6.38□□□□□ -1.39
CLN3-224ENST00000566816 SPCS1Q9Y6A9 102 aa6.38□□□□□ -1.39
CLN3-224ENST00000566816 H3BT86 120 aa6.37□□□□□ -1.39
CLN3-224ENST00000566816 IGFL1Q6UW32 110 aa6.37□□□□□ -1.39
CLN3-224ENST00000566816 ANKRD29Q8N6D5 301 aa6.37□□□□□ -1.39
CLN3-224ENST00000566816 C9JAW5 83 aa6.36□□□□□ -1.39
CLN3-224ENST00000566816 JMJD7-PLA2G4BH0Y9G9 81 aa6.36□□□□□ -1.39
CLN3-224ENST00000566816 LIMD2Q9BT23 127 aa6.36□□□□□ -1.39
CLN3-224ENST00000566816 RBM3P98179 157 aaKnown RBP6.35□□□□□ -1.39
CLN3-224ENST00000566816 TEN1Q86WV5 123 aa6.35□□□□□ -1.39
CLN3-224ENST00000566816 K7EP34 96 aa6.34□□□□□ -1.39
CLN3-224ENST00000566816 C21orf62-AS1Q17RA5 79 aa6.34□□□□□ -1.39
CLN3-224ENST00000566816 GTF2H5Q6ZYL4 71 aa6.34□□□□□ -1.39
CLN3-224ENST00000566816 TRBV7-4A0A0J9YYF1 115 aa6.33□□□□□ -1.4
CLN3-224ENST00000566816 PDE6GP18545 87 aa6.33□□□□□ -1.4
CLN3-224ENST00000566816 OBSCN-AS1Q96MR7 158 aa6.33□□□□□ -1.4
CLN3-224ENST00000566816 HMCN2Q8NDA2 5059 aa6.33□□□□□ -1.4
CLN3-224ENST00000566816 TRBV7-7A0A0K0K1E9 115 aa6.32□□□□□ -1.4
CLN3-224ENST00000566816 A0A1B0GW54 56 aa6.32□□□□□ -1.4
CLN3-224ENST00000566816 ASB16-AS1Q495Z4 193 aa6.32□□□□□ -1.4
CLN3-224ENST00000566816 FP248Q71RG6 208 aaPredicted RBP6.32□□□□□ -1.4
CLN3-224ENST00000566816 DSCR8Q96T75 97 aa6.32□□□□□ -1.4
CLN3-224ENST00000566816 A0A0G2JQZ4 141 aa6.3□□□□□ -1.4
CLN3-224ENST00000566816 HRCT1Q6UXD1 115 aa6.3□□□□□ -1.4
CLN3-224ENST00000566816 LOC110117498A0A087WWA1 95 aa6.29□□□□□ -1.4
CLN3-224ENST00000566816 A0A1W2PNM2 257 aa6.29□□□□□ -1.4
CLN3-224ENST00000566816 F8W1H4 67 aa6.29□□□□□ -1.4
CLN3-224ENST00000566816 SS18L2Q9UHA2 77 aa6.29□□□□□ -1.4
CLN3-224ENST00000566816 PRO0461Q9UI25 63 aa6.29□□□□□ -1.4
CLN3-224ENST00000566816 CCKP06307 115 aa6.27□□□□□ -1.41
CLN3-224ENST00000566816 SMCPP49901 116 aaPredicted RBP6.27□□□□□ -1.41
CLN3-224ENST00000566816 Q6ZQT0 140 aa6.26□□□□□ -1.41
CLN3-224ENST00000566816 PRR4Q16378 134 aa6.25□□□□□ -1.41
CLN3-224ENST00000566816 C1orf195Q5TG92 126 aa6.25□□□□□ -1.41
CLN3-224ENST00000566816 IGLV7-46A0A075B6I9 117 aa6.24□□□□□ -1.41
CLN3-224ENST00000566816 A0A087WSZ3 146 aa6.23□□□□□ -1.41
CLN3-224ENST00000566816 TPRXLQ17RH7 258 aa6.23□□□□□ -1.41
CLN3-224ENST00000566816 MTURNQ8N3F0 131 aa6.23□□□□□ -1.41
CLN3-224ENST00000566816 RETNLBQ9BQ08 111 aa6.23□□□□□ -1.41
CLN3-224ENST00000566816 A0A1B0GV72 72 aa6.22□□□□□ -1.41
CLN3-224ENST00000566816 C14orf132Q9NPU4 83 aa6.22□□□□□ -1.41
CLN3-224ENST00000566816 VPS25Q9BRG1 176 aa6.19□□□□□ -1.42
CLN3-224ENST00000566816 LRP2P98164 4655 aa6.19□□□□□ -1.42
CLN3-224ENST00000566816 LINC00472Q9H8W2 130 aa6.18□□□□□ -1.42
CLN3-224ENST00000566816 KRTAP13-3Q3SY46 172 aa6.17□□□□□ -1.42
CLN3-224ENST00000566816 Q96NJ1 140 aa6.17□□□□□ -1.42
CLN3-224ENST00000566816 A0A1B0GV90 55 aa6.16□□□□□ -1.42
CLN3-224ENST00000566816 ETDBQ3ZM63 59 aa6.16□□□□□ -1.42
CLN3-224ENST00000566816 LPAP08519 4548 aa6.16□□□□□ -1.42
CLN3-224ENST00000566816 J3KT08 172 aa6.15□□□□□ -1.42
CLN3-224ENST00000566816 NREPQ16612 68 aa6.12□□□□□ -1.43
CLN3-224ENST00000566816 CDIP1Q9H305 208 aa6.12□□□□□ -1.43
CLN3-224ENST00000566816 IGKV4-1P06312 121 aa6.1□□□□□ -1.43
CLN3-224ENST00000566816 XP32Q5T750 250 aa6.09□□□□□ -1.43
CLN3-224ENST00000566816 ACYP1P07311 99 aa6.08□□□□□ -1.44
CLN3-224ENST00000566816 FAM240AA0A1B0GVK7 77 aa6.06□□□□□ -1.44
CLN3-224ENST00000566816 NDUFB1O75438 58 aa6.06□□□□□ -1.44
CLN3-224ENST00000566816 DEFB116Q30KQ4 102 aa6.06□□□□□ -1.44
CLN3-224ENST00000566816 SIGMAR1Q99720 223 aa6.06□□□□□ -1.44
CLN3-224ENST00000566816 UBL5Q9BZL1 73 aa6.06□□□□□ -1.44
CLN3-224ENST00000566816 LINC00846Q9NV44 126 aa6.06□□□□□ -1.44
CLN3-224ENST00000566816 MUC17Q685J3 4493 aa6.05□□□□□ -1.44
CLN3-224ENST00000566816 A8MWP4 228 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms