RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 NUPR2A6NF83 97 aa8.52□□□□□ -1.05
VPS4A-204ENST00000566354 C8orf87E5RJ46 101 aa8.52□□□□□ -1.05
VPS4A-204ENST00000566354 KRTAP4-16G5E9R7 235 aaPredicted RBP8.52□□□□□ -1.05
VPS4A-204ENST00000566354 PRYO14603 147 aa8.52□□□□□ -1.05
VPS4A-204ENST00000566354 IGLV1-50A0A075B6I6 118 aa8.51□□□□□ -1.05
VPS4A-204ENST00000566354 IGLV5-37A0A075B6J1 123 aa8.51□□□□□ -1.05
VPS4A-204ENST00000566354 hDV103S1A0JD37 113 aa8.51□□□□□ -1.05
VPS4A-204ENST00000566354 SPRR1AP35321 89 aa8.51□□□□□ -1.05
VPS4A-204ENST00000566354 ETDCA0A1B0GVM5 59 aa8.5□□□□□ -1.05
VPS4A-204ENST00000566354 RPL37AP8A6NKH3 93 aa8.5□□□□□ -1.05
VPS4A-204ENST00000566354 ATP11AUNQ6ZP68 121 aa8.5□□□□□ -1.05
VPS4A-204ENST00000566354 Q9BRP9 147 aa8.5□□□□□ -1.05
VPS4A-204ENST00000566354 A0A1W2PNM2 257 aa8.49□□□□□ -1.05
VPS4A-204ENST00000566354 C1orf137Q5JT78 98 aa8.48□□□□□ -1.05
VPS4A-204ENST00000566354 LCA10Q71F78 164 aa8.48□□□□□ -1.05
VPS4A-204ENST00000566354 UBE2AP49459 152 aa8.48□□□□□ -1.05
VPS4A-204ENST00000566354 DNAH1Q9P2D7 4330 aa8.47□□□□□ -1.05
VPS4A-204ENST00000566354 FAM168BA1KXE4 195 aa8.47□□□□□ -1.05
VPS4A-204ENST00000566354 UBE2DNLQ8IWF7 75 aa8.46□□□□□ -1.05
VPS4A-204ENST00000566354 Q8NBF4 154 aa8.46□□□□□ -1.05
VPS4A-204ENST00000566354 ST20-AS1Q8NBB2 130 aa8.45□□□□□ -1.06
VPS4A-204ENST00000566354 SPRR4Q96PI1 79 aa8.45□□□□□ -1.06
VPS4A-204ENST00000566354 C7orf65Q6ZTY9 151 aa8.44□□□□□ -1.06
VPS4A-204ENST00000566354 KRTAP7-1Q8IUC3 87 aa8.44□□□□□ -1.06
VPS4A-204ENST00000566354 CASC10Q5T4H9 136 aa8.43□□□□□ -1.06
VPS4A-204ENST00000566354 WWC2-AS2Q96NR7 200 aa8.43□□□□□ -1.06
VPS4A-204ENST00000566354 SMIM29Q86T20 159 aa8.42□□□□□ -1.06
VPS4A-204ENST00000566354 VPS13DQ5THJ4 4388 aa8.42□□□□□ -1.06
VPS4A-204ENST00000566354 HIGD2AQ9BW72 106 aa8.42□□□□□ -1.06
VPS4A-204ENST00000566354 KRTAP1-5Q9BYS1 174 aa8.42□□□□□ -1.06
VPS4A-204ENST00000566354 TRAV22A0A0B4J277 110 aa8.41□□□□□ -1.06
VPS4A-204ENST00000566354 CYP4F30PQ9H0H9 118 aa8.41□□□□□ -1.06
VPS4A-204ENST00000566354 A6NN06 94 aa8.41□□□□□ -1.06
VPS4A-204ENST00000566354 LCE6AA0A183 80 aa8.4□□□□□ -1.06
VPS4A-204ENST00000566354 FAM30AQ9NZY2 134 aa8.4□□□□□ -1.07
VPS4A-204ENST00000566354 DSCR10P59022 87 aa8.39□□□□□ -1.07
VPS4A-204ENST00000566354 REG3GQ6UW15 175 aa8.39□□□□□ -1.07
VPS4A-204ENST00000566354 PRR26Q8N8Z3 221 aa8.39□□□□□ -1.07
VPS4A-204ENST00000566354 DNAH10Q8IVF4 4471 aa8.39□□□□□ -1.07
VPS4A-204ENST00000566354 KMT2AQ03164 3969 aa8.36□□□□□ -1.07
VPS4A-204ENST00000566354 K7EQZ3 153 aa8.35□□□□□ -1.07
VPS4A-204ENST00000566354 LINC00476Q8WZB0 136 aa8.35□□□□□ -1.07
VPS4A-204ENST00000566354 LIMD2Q9BT23 127 aa8.35□□□□□ -1.07
VPS4A-204ENST00000566354 A8MUN3 132 aa8.34□□□□□ -1.07
VPS4A-204ENST00000566354 NBDYA0A0U1RRE5 68 aa8.34□□□□□ -1.08
VPS4A-204ENST00000566354 HCG22E2RYF7 251 aa8.32□□□□□ -1.08
VPS4A-204ENST00000566354 Q5VV11 94 aa8.32□□□□□ -1.08
VPS4A-204ENST00000566354 IGFL1Q6UW32 110 aa8.32□□□□□ -1.08
VPS4A-204ENST00000566354 ZCCHC13Q8WW36 166 aaKnown RBP8.32□□□□□ -1.08
VPS4A-204ENST00000566354 C16orf90A8MZG2 172 aa8.31□□□□□ -1.08
VPS4A-204ENST00000566354 PSCAO43653 123 aa8.31□□□□□ -1.08
VPS4A-204ENST00000566354 LY6G6CO95867 125 aa8.31□□□□□ -1.08
VPS4A-204ENST00000566354 C1orf64Q8NEQ6 169 aa8.31□□□□□ -1.08
VPS4A-204ENST00000566354 IGLV8-61A0A075B6I0 122 aa8.3□□□□□ -1.08
VPS4A-204ENST00000566354 PSPHP1O15172 72 aa8.29□□□□□ -1.08
VPS4A-204ENST00000566354 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.28□□□□□ -1.08
VPS4A-204ENST00000566354 A0A096LNI7 61 aa8.28□□□□□ -1.08
VPS4A-204ENST00000566354 A0A0A0MQY5 61 aa8.28□□□□□ -1.08
VPS4A-204ENST00000566354 A0A0G2JQZ4 141 aa8.28□□□□□ -1.08
VPS4A-204ENST00000566354 A0A1W2PNN7 141 aa8.28□□□□□ -1.08
VPS4A-204ENST00000566354 PRLHP81277 87 aa8.28□□□□□ -1.08
VPS4A-204ENST00000566354 A0A087X002 238 aa8.27□□□□□ -1.09
VPS4A-204ENST00000566354 CNBPP62633 177 aaKnown RBP8.27□□□□□ -1.09
VPS4A-204ENST00000566354 DNAH2Q9P225 4427 aa8.27□□□□□ -1.09
VPS4A-204ENST00000566354 A0A087WSZ3 146 aa8.26□□□□□ -1.09
VPS4A-204ENST00000566354 IGKV2-24A0A0C4DH68 120 aa8.26□□□□□ -1.09
VPS4A-204ENST00000566354 ASB16-AS1Q495Z4 193 aa8.26□□□□□ -1.09
VPS4A-204ENST00000566354 Q75L30 129 aa8.26□□□□□ -1.09
VPS4A-204ENST00000566354 ALMS1Q8TCU4 4167 aa8.26□□□□□ -1.09
VPS4A-204ENST00000566354 Q6ZR54 194 aa8.25□□□□□ -1.09
VPS4A-204ENST00000566354 CDC42SE1Q9NRR8 79 aa8.25□□□□□ -1.09
VPS4A-204ENST00000566354 Q6ZRN7 208 aaPredicted RBP8.25□□□□□ -1.09
VPS4A-204ENST00000566354 DEFB116Q30KQ4 102 aa8.24□□□□□ -1.09
VPS4A-204ENST00000566354 HYDINQ4G0P3 5121 aa8.24□□□□□ -1.09
VPS4A-204ENST00000566354 NDUFB1O75438 58 aa8.23□□□□□ -1.09
VPS4A-204ENST00000566354 CHKB-CPT1BH3BT56 60 aa8.22□□□□□ -1.09
VPS4A-204ENST00000566354 DNAH6Q9C0G6 4158 aa8.22□□□□□ -1.09
VPS4A-204ENST00000566354 LOC101927531A0A1B0GV80 90 aa8.21□□□□□ -1.09
VPS4A-204ENST00000566354 MP68P56378 58 aa8.21□□□□□ -1.09
VPS4A-204ENST00000566354 WFDC13Q8IUB5 93 aa8.21□□□□□ -1.09
VPS4A-204ENST00000566354 LRCOL1A6NCL2 159 aa8.2□□□□□ -1.1
VPS4A-204ENST00000566354 H0Y9J4 135 aa8.2□□□□□ -1.1
VPS4A-204ENST00000566354 SPRR1BP22528 89 aa8.2□□□□□ -1.1
VPS4A-204ENST00000566354 KRTAP29-1A8MX34 341 aaPredicted RBP8.19□□□□□ -1.1
VPS4A-204ENST00000566354 LINC01554Q52M75 96 aa8.19□□□□□ -1.1
VPS4A-204ENST00000566354 SACSQ9NZJ4 4579 aa8.19□□□□□ -1.1
VPS4A-204ENST00000566354 C14orf177Q52M58 125 aa8.19□□□□□ -1.1
VPS4A-204ENST00000566354 SPTSSBQ8NFR3 76 aa8.19□□□□□ -1.1
VPS4A-204ENST00000566354 RPL37AP61513 92 aaKnown RBP8.18□□□□□ -1.1
VPS4A-204ENST00000566354 C1orf134Q5TEV5 83 aa8.17□□□□□ -1.1
VPS4A-204ENST00000566354 CASC2Q6XLA1 102 aa8.15□□□□□ -1.1
VPS4A-204ENST00000566354 KRTAP11-1Q8IUC1 163 aa8.15□□□□□ -1.1
VPS4A-204ENST00000566354 Q8N9P0 234 aaPredicted RBP8.15□□□□□ -1.1
VPS4A-204ENST00000566354 A8MWP4 228 aa8.15□□□□□ -1.1
VPS4A-204ENST00000566354 H3BPC8 53 aa8.15□□□□□ -1.1
VPS4A-204ENST00000566354 LINC00208Q96KT6 92 aa8.15□□□□□ -1.1
VPS4A-204ENST00000566354 LINC00472Q9H8W2 130 aa8.15□□□□□ -1.1
VPS4A-204ENST00000566354 DNAH17Q9UFH2 4485 aa8.15□□□□□ -1.11
VPS4A-204ENST00000566354 CHTF8P0CG12 524 aa8.14□□□□□ -1.11
VPS4A-204ENST00000566354 FRAS1Q86XX4 4008 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms