RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 PCOTHQ58A44 107 aa8.12□□□□□ -1.11
CLN3-222ENST00000566083 IGLV8-61A0A075B6I0 122 aa8.11□□□□□ -1.11
CLN3-222ENST00000566083 DLEU1O43261 78 aa8.11□□□□□ -1.11
CLN3-222ENST00000566083 SMIM29Q86T20 159 aa8.11□□□□□ -1.11
CLN3-222ENST00000566083 MUSTN1Q8IVN3 82 aa8.11□□□□□ -1.11
CLN3-222ENST00000566083 LCE2DQ5TA82 110 aaPredicted RBP8.1□□□□□ -1.11
CLN3-222ENST00000566083 TCL1BO95988 128 aa8.09□□□□□ -1.11
CLN3-222ENST00000566083 VAMP3Q15836 100 aa8.09□□□□□ -1.11
CLN3-222ENST00000566083 F8WEM9 126 aa8.07□□□□□ -1.12
CLN3-222ENST00000566083 C1orf195Q5TG92 126 aa8.07□□□□□ -1.12
CLN3-222ENST00000566083 C2orf91Q6ZV80 131 aa8.07□□□□□ -1.12
CLN3-222ENST00000566083 CFC1BP0CG36 223 aa8.06□□□□□ -1.12
CLN3-222ENST00000566083 SMIM11BQ8TCY0 68 aa8.06□□□□□ -1.12
CLN3-222ENST00000566083 LCE2CQ5TA81 110 aa8.05□□□□□ -1.12
CLN3-222ENST00000566083 Q6JHZ5 121 aa8.03□□□□□ -1.12
CLN3-222ENST00000566083 HIGD1BQ9P298 99 aa8.03□□□□□ -1.12
CLN3-222ENST00000566083 KRTAP19-2Q3LHN2 52 aa8.02□□□□□ -1.13
CLN3-222ENST00000566083 RPL37P61927 97 aaKnown RBP8.01□□□□□ -1.13
CLN3-222ENST00000566083 LINC00575Q6W349 94 aa8□□□□□ -1.13
CLN3-222ENST00000566083 hADV29S1A0JD25 119 aa7.99□□□□□ -1.13
CLN3-222ENST00000566083 MT1HP80294 61 aa7.99□□□□□ -1.13
CLN3-222ENST00000566083 CRCT1Q9UGL9 99 aa7.99□□□□□ -1.13
CLN3-222ENST00000566083 A0A0G2JQZ4 141 aa7.98□□□□□ -1.13
CLN3-222ENST00000566083 HSD52Q0P140 79 aa7.97□□□□□ -1.13
CLN3-222ENST00000566083 PPDPFLQ8WWR9 84 aa7.97□□□□□ -1.13
CLN3-222ENST00000566083 CLEC2BQ92478 149 aa7.97□□□□□ -1.13
CLN3-222ENST00000566083 SNHG12Q9BXW3 62 aa7.97□□□□□ -1.13
CLN3-222ENST00000566083 FSIP2Q5CZC0 6907 aa7.96□□□□□ -1.13
CLN3-222ENST00000566083 Q6ZQY7 126 aa7.96□□□□□ -1.13
CLN3-222ENST00000566083 HIST1H4GQ99525 98 aa7.96□□□□□ -1.13
CLN3-222ENST00000566083 M0R143 59 aa7.95□□□□□ -1.14
CLN3-222ENST00000566083 BVES-AS1Q5T3Y7 98 aa7.95□□□□□ -1.14
CLN3-222ENST00000566083 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.95□□□□□ -1.14
CLN3-222ENST00000566083 OCIAD2Q56VL3 154 aa7.95□□□□□ -1.14
CLN3-222ENST00000566083 TRBV7-7A0A0K0K1E9 115 aa7.94□□□□□ -1.14
CLN3-222ENST00000566083 COX6B2Q6YFQ2 88 aa7.94□□□□□ -1.14
CLN3-222ENST00000566083 CEND1Q8N111 149 aa7.94□□□□□ -1.14
CLN3-222ENST00000566083 BATFQ16520 125 aa7.93□□□□□ -1.14
CLN3-222ENST00000566083 SNCGO76070 127 aa7.92□□□□□ -1.14
CLN3-222ENST00000566083 FXYD2P54710 66 aa7.92□□□□□ -1.14
CLN3-222ENST00000566083 M0R2T5 61 aa7.91□□□□□ -1.14
CLN3-222ENST00000566083 IGFL1Q6UW32 110 aa7.91□□□□□ -1.14
CLN3-222ENST00000566083 ATP11AUNQ6ZP68 121 aa7.89□□□□□ -1.15
CLN3-222ENST00000566083 LORP23490 312 aaPredicted RBP7.87□□□□□ -1.15
CLN3-222ENST00000566083 KRTAP10-6P60371 365 aaPredicted RBP7.87□□□□□ -1.15
CLN3-222ENST00000566083 LST1O00453 97 aa7.86□□□□□ -1.15
CLN3-222ENST00000566083 COL5A1-AS1Q5SY13 56 aa7.86□□□□□ -1.15
CLN3-222ENST00000566083 Q75L30 129 aa7.86□□□□□ -1.15
CLN3-222ENST00000566083 SS18L2Q9UHA2 77 aa7.86□□□□□ -1.15
CLN3-222ENST00000566083 GHRHP01286 108 aa7.86□□□□□ -1.15
CLN3-222ENST00000566083 CFC1P0CG37 223 aa7.86□□□□□ -1.15
CLN3-222ENST00000566083 H0YGX0 51 aa7.84□□□□□ -1.15
CLN3-222ENST00000566083 Q6Q795 121 aa7.84□□□□□ -1.15
CLN3-222ENST00000566083 OBSCN-AS1Q96MR7 158 aa7.84□□□□□ -1.15
CLN3-222ENST00000566083 TMEM238LA0A1B0GVL6 79 aa7.83□□□□□ -1.16
CLN3-222ENST00000566083 A6NJY4 79 aa7.83□□□□□ -1.16
CLN3-222ENST00000566083 K7ERJ3 54 aa7.83□□□□□ -1.16
CLN3-222ENST00000566083 RAB37Q96AX2 223 aa7.82□□□□□ -1.16
CLN3-222ENST00000566083 TAX1BP3O14907 124 aa7.81□□□□□ -1.16
CLN3-222ENST00000566083 TEN1Q86WV5 123 aa7.81□□□□□ -1.16
CLN3-222ENST00000566083 A0A0B4J2C4 111 aa7.8□□□□□ -1.16
CLN3-222ENST00000566083 H3BUT2 72 aa7.8□□□□□ -1.16
CLN3-222ENST00000566083 Q96NJ1 140 aa7.78□□□□□ -1.16
CLN3-222ENST00000566083 PRO1854Q9UHT4 67 aa7.78□□□□□ -1.16
CLN3-222ENST00000566083 A0A1B0GX51 115 aa7.78□□□□□ -1.16
CLN3-222ENST00000566083 NDUFV3P56181 108 aaKnown RBP7.78□□□□□ -1.16
CLN3-222ENST00000566083 A0A1B0GV90 55 aa7.77□□□□□ -1.17
CLN3-222ENST00000566083 FLGP20930 4061 aaPredicted RBP7.75□□□□□ -1.17
CLN3-222ENST00000566083 C9orf118A6NHY6 69 aa7.75□□□□□ -1.17
CLN3-222ENST00000566083 C20orf166-AS1Q96NR2 134 aa7.75□□□□□ -1.17
CLN3-222ENST00000566083 NAA38Q9BRA0 125 aaKnown RBP7.74□□□□□ -1.17
CLN3-222ENST00000566083 H3BMG7 143 aa7.73□□□□□ -1.17
CLN3-222ENST00000566083 TRBV20-1A0A075B6N2 111 aa7.72□□□□□ -1.17
CLN3-222ENST00000566083 A0A087WSZ3 146 aa7.72□□□□□ -1.17
CLN3-222ENST00000566083 A8MUU9 505 aa7.71□□□□□ -1.17
CLN3-222ENST00000566083 H3BQ85 93 aa7.7□□□□□ -1.18
CLN3-222ENST00000566083 FABP2P12104 132 aa7.7□□□□□ -1.18
CLN3-222ENST00000566083 FAM218AQ96MZ4 157 aa7.7□□□□□ -1.18
CLN3-222ENST00000566083 A0A1W2PPM0 123 aa7.69□□□□□ -1.18
CLN3-222ENST00000566083 TRIAP1O43715 76 aa7.68□□□□□ -1.18
CLN3-222ENST00000566083 PSMB2P49721 201 aa7.67□□□□□ -1.18
CLN3-222ENST00000566083 DNAL4O96015 105 aa7.66□□□□□ -1.18
CLN3-222ENST00000566083 SIGMAR1Q99720 223 aa7.65□□□□□ -1.18
CLN3-222ENST00000566083 TRBV7-4A0A0J9YYF1 115 aa7.64□□□□□ -1.19
CLN3-222ENST00000566083 K7EP34 96 aa7.63□□□□□ -1.19
CLN3-222ENST00000566083 SCGB1C2P0DMR2 95 aa7.63□□□□□ -1.19
CLN3-222ENST00000566083 LINC00313P59037 77 aa7.63□□□□□ -1.19
CLN3-222ENST00000566083 ANKRD29Q8N6D5 301 aa7.63□□□□□ -1.19
CLN3-222ENST00000566083 ORMDL1Q9P0S3 153 aa7.63□□□□□ -1.19
CLN3-222ENST00000566083 SPCS1Q9Y6A9 102 aa7.63□□□□□ -1.19
CLN3-222ENST00000566083 A0A1W2PNM2 257 aa7.62□□□□□ -1.19
CLN3-222ENST00000566083 LYRM7Q5U5X0 104 aa7.62□□□□□ -1.19
CLN3-222ENST00000566083 TMEM256-PLSCR3K7ERE1 68 aa7.61□□□□□ -1.19
CLN3-222ENST00000566083 COX6CP09669 75 aa7.61□□□□□ -1.19
CLN3-222ENST00000566083 DSCR10P59022 87 aa7.61□□□□□ -1.19
CLN3-222ENST00000566083 IGKV4-1P06312 121 aa7.6□□□□□ -1.19
CLN3-222ENST00000566083 UBE2V1Q13404 147 aa7.6□□□□□ -1.19
CLN3-222ENST00000566083 GTF2H5Q6ZYL4 71 aa7.59□□□□□ -1.19
CLN3-222ENST00000566083 TRACP01848 142 aa7.56□□□□□ -1.2
CLN3-222ENST00000566083 FAM236DA0A1B0GTK5 79 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms