RNA–Protein interactions for RNA: ENST00000566057.5

CLN3-221, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-221ENST00000566057 CFC1BP0CG36 223 aa10.05□□□□□ -0.8
CLN3-221ENST00000566057 CFC1P0CG37 223 aa10.05□□□□□ -0.8
CLN3-221ENST00000566057 C1orf195Q5TG92 126 aa10.05□□□□□ -0.8
CLN3-221ENST00000566057 HIGD1BQ9P298 99 aa10.04□□□□□ -0.8
CLN3-221ENST00000566057 F8WEM9 126 aa10.03□□□□□ -0.8
CLN3-221ENST00000566057 C2orf91Q6ZV80 131 aa10.03□□□□□ -0.8
CLN3-221ENST00000566057 VAMP8Q9BV40 100 aa10.03□□□□□ -0.8
CLN3-221ENST00000566057 BVES-AS1Q5T3Y7 98 aa10.02□□□□□ -0.81
CLN3-221ENST00000566057 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.01□□□□□ -0.81
CLN3-221ENST00000566057 IGLV8-61A0A075B6I0 122 aa9.99□□□□□ -0.81
CLN3-221ENST00000566057 RAB37Q96AX2 223 aa9.99□□□□□ -0.81
CLN3-221ENST00000566057 OCIAD2Q56VL3 154 aa9.98□□□□□ -0.81
CLN3-221ENST00000566057 A0A0B4J2C4 111 aa9.97□□□□□ -0.81
CLN3-221ENST00000566057 IGFL1Q6UW32 110 aa9.97□□□□□ -0.81
CLN3-221ENST00000566057 Q6JHZ5 121 aa9.96□□□□□ -0.82
CLN3-221ENST00000566057 TCL1BO95988 128 aa9.95□□□□□ -0.82
CLN3-221ENST00000566057 PCOTHQ58A44 107 aa9.95□□□□□ -0.82
CLN3-221ENST00000566057 CEND1Q8N111 149 aa9.95□□□□□ -0.82
CLN3-221ENST00000566057 CLEC2BQ92478 149 aa9.95□□□□□ -0.82
CLN3-221ENST00000566057 PPDPFLQ8WWR9 84 aa9.94□□□□□ -0.82
CLN3-221ENST00000566057 FAM218AQ96MZ4 157 aa9.94□□□□□ -0.82
CLN3-221ENST00000566057 SNHG12Q9BXW3 62 aa9.94□□□□□ -0.82
CLN3-221ENST00000566057 TRBV7-7A0A0K0K1E9 115 aa9.92□□□□□ -0.82
CLN3-221ENST00000566057 H0YGX0 51 aa9.91□□□□□ -0.82
CLN3-221ENST00000566057 H3BUT2 72 aa9.91□□□□□ -0.82
CLN3-221ENST00000566057 FXYD2P54710 66 aa9.91□□□□□ -0.82
CLN3-221ENST00000566057 PYY3Q5JQD4 70 aa9.91□□□□□ -0.82
CLN3-221ENST00000566057 PRO1854Q9UHT4 67 aa9.9□□□□□ -0.82
CLN3-221ENST00000566057 TMEM238LA0A1B0GVL6 79 aa9.86□□□□□ -0.83
CLN3-221ENST00000566057 A6NJY4 79 aa9.86□□□□□ -0.83
CLN3-221ENST00000566057 SNCGO76070 127 aa9.86□□□□□ -0.83
CLN3-221ENST00000566057 LCE2CQ5TA81 110 aa9.85□□□□□ -0.83
CLN3-221ENST00000566057 KRTAP9-2Q9BYQ4 174 aa9.85□□□□□ -0.83
CLN3-221ENST00000566057 TRIAP1O43715 76 aa9.83□□□□□ -0.84
CLN3-221ENST00000566057 NDUFV3P56181 108 aaKnown RBP9.83□□□□□ -0.84
CLN3-221ENST00000566057 RPL37P61927 97 aaKnown RBP9.83□□□□□ -0.84
CLN3-221ENST00000566057 KRTAP19-2Q3LHN2 52 aa9.83□□□□□ -0.84
CLN3-221ENST00000566057 TMA7Q9Y2S6 64 aaKnown RBP9.83□□□□□ -0.84
CLN3-221ENST00000566057 A0A1B0GX51 115 aa9.81□□□□□ -0.84
CLN3-221ENST00000566057 HSD52Q0P140 79 aa9.81□□□□□ -0.84
CLN3-221ENST00000566057 K7ERJ3 54 aa9.79□□□□□ -0.84
CLN3-221ENST00000566057 Q6Q795 121 aa9.79□□□□□ -0.84
CLN3-221ENST00000566057 LST1O00453 97 aa9.78□□□□□ -0.84
CLN3-221ENST00000566057 FABP2P12104 132 aa9.78□□□□□ -0.84
CLN3-221ENST00000566057 H3BMG7 143 aa9.77□□□□□ -0.85
CLN3-221ENST00000566057 TEN1Q86WV5 123 aa9.77□□□□□ -0.85
CLN3-221ENST00000566057 OBSCN-AS1Q96MR7 158 aa9.75□□□□□ -0.85
CLN3-221ENST00000566057 GHRHP01286 108 aa9.74□□□□□ -0.85
CLN3-221ENST00000566057 UQCR10Q9UDW1 63 aa9.74□□□□□ -0.85
CLN3-221ENST00000566057 PSMB2P49721 201 aa9.73□□□□□ -0.85
CLN3-221ENST00000566057 A0A087WSZ3 146 aa9.72□□□□□ -0.85
CLN3-221ENST00000566057 SS18L2Q9UHA2 77 aa9.72□□□□□ -0.85
CLN3-221ENST00000566057 A0A1W2PNM2 257 aa9.7□□□□□ -0.86
CLN3-221ENST00000566057 MT1HP80294 61 aa9.7□□□□□ -0.86
CLN3-221ENST00000566057 Q96NJ1 140 aa9.69□□□□□ -0.86
CLN3-221ENST00000566057 ORMDL1Q9P0S3 153 aa9.69□□□□□ -0.86
CLN3-221ENST00000566057 DNAL4O96015 105 aa9.68□□□□□ -0.86
CLN3-221ENST00000566057 A0A1B0GV72 72 aa9.67□□□□□ -0.86
CLN3-221ENST00000566057 COX6CP09669 75 aa9.67□□□□□ -0.86
CLN3-221ENST00000566057 Q75L30 129 aa9.67□□□□□ -0.86
CLN3-221ENST00000566057 ANKRD29Q8N6D5 301 aa9.65□□□□□ -0.86
CLN3-221ENST00000566057 H3BQ85 93 aa9.64□□□□□ -0.87
CLN3-221ENST00000566057 TMEM256-PLSCR3K7ERE1 68 aa9.64□□□□□ -0.87
CLN3-221ENST00000566057 ATP11AUNQ6ZP68 121 aa9.63□□□□□ -0.87
CLN3-221ENST00000566057 TRBV7-4A0A0J9YYF1 115 aa9.61□□□□□ -0.87
CLN3-221ENST00000566057 FLGP20930 4061 aaPredicted RBP9.6□□□□□ -0.87
CLN3-221ENST00000566057 UBE2V1Q13404 147 aa9.59□□□□□ -0.87
CLN3-221ENST00000566057 C20orf166-AS1Q96NR2 134 aa9.59□□□□□ -0.87
CLN3-221ENST00000566057 TRACP01848 142 aa9.58□□□□□ -0.88
CLN3-221ENST00000566057 SCGB1C2P0DMR2 95 aa9.58□□□□□ -0.88
CLN3-221ENST00000566057 DSCR10P59022 87 aa9.58□□□□□ -0.88
CLN3-221ENST00000566057 A8MUU9 505 aa9.57□□□□□ -0.88
CLN3-221ENST00000566057 CCKP06307 115 aa9.56□□□□□ -0.88
CLN3-221ENST00000566057 LCE2DQ5TA82 110 aaPredicted RBP9.56□□□□□ -0.88
CLN3-221ENST00000566057 COX6B2Q6YFQ2 88 aa9.56□□□□□ -0.88
CLN3-221ENST00000566057 SIGMAR1Q99720 223 aa9.56□□□□□ -0.88
CLN3-221ENST00000566057 IGKV4-1P06312 121 aa9.54□□□□□ -0.88
CLN3-221ENST00000566057 DEFB116Q30KQ4 102 aa9.54□□□□□ -0.88
CLN3-221ENST00000566057 LINC00472Q9H8W2 130 aa9.53□□□□□ -0.88
CLN3-221ENST00000566057 LORP23490 312 aaPredicted RBP9.51□□□□□ -0.89
CLN3-221ENST00000566057 KRTAP10-6P60371 365 aaPredicted RBP9.51□□□□□ -0.89
CLN3-221ENST00000566057 KRTAP9-6A0A140TA67 174 aa9.5□□□□□ -0.89
CLN3-221ENST00000566057 BAALC-AS2P0C853 105 aa9.5□□□□□ -0.89
CLN3-221ENST00000566057 LINC00313P59037 77 aa9.5□□□□□ -0.89
CLN3-221ENST00000566057 RBM3P98179 157 aaKnown RBP9.5□□□□□ -0.89
CLN3-221ENST00000566057 NOTCH2NLQ7Z3S9 236 aa9.5□□□□□ -0.89
CLN3-221ENST00000566057 M0R2T5 61 aa9.49□□□□□ -0.89
CLN3-221ENST00000566057 KRTAP16-1A8MUX0 517 aa9.48□□□□□ -0.89
CLN3-221ENST00000566057 NAA38Q9BRA0 125 aaKnown RBP9.48□□□□□ -0.89
CLN3-221ENST00000566057 VPS25Q9BRG1 176 aa9.48□□□□□ -0.89
CLN3-221ENST00000566057 M0R143 59 aa9.46□□□□□ -0.9
CLN3-221ENST00000566057 DSCR8Q96T75 97 aa9.46□□□□□ -0.9
CLN3-221ENST00000566057 SMIM6P0DI80 62 aa9.44□□□□□ -0.9
CLN3-221ENST00000566057 IGHV6-1A0A0B4J1U7 121 aa9.43□□□□□ -0.9
CLN3-221ENST00000566057 C9JAW5 83 aa9.41□□□□□ -0.9
CLN3-221ENST00000566057 ATXN8Q156A1 80 aa9.41□□□□□ -0.9
CLN3-221ENST00000566057 FSIP2Q5CZC0 6907 aa9.39□□□□□ -0.91
CLN3-221ENST00000566057 A0A1B0GVX0 72 aa9.37□□□□□ -0.91
CLN3-221ENST00000566057 Q6ZQT0 140 aa9.37□□□□□ -0.91
CLN3-221ENST00000566057 TRBV20-1A0A075B6N2 111 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms