RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 VAMP3Q15836 100 aa5.83□□□□□ -1.48
VPS39-208ENST00000564994 Q6ZQY7 126 aa5.83□□□□□ -1.48
VPS39-208ENST00000564994 hADV29S1A0JD25 119 aa5.82□□□□□ -1.48
VPS39-208ENST00000564994 S100A6P06703 90 aa5.82□□□□□ -1.48
VPS39-208ENST00000564994 C12orf57Q99622 126 aa5.82□□□□□ -1.48
VPS39-208ENST00000564994 FSIP2Q5CZC0 6907 aa5.81□□□□□ -1.48
VPS39-208ENST00000564994 F8WEM9 126 aa5.8□□□□□ -1.48
VPS39-208ENST00000564994 SCGB1D1O95968 90 aa5.8□□□□□ -1.48
VPS39-208ENST00000564994 KRTAP9-6A0A140TA67 174 aa5.79□□□□□ -1.48
VPS39-208ENST00000564994 TCL1BO95988 128 aa5.79□□□□□ -1.48
VPS39-208ENST00000564994 COX8AP10176 69 aa5.79□□□□□ -1.48
VPS39-208ENST00000564994 IGFL1Q6UW32 110 aa5.79□□□□□ -1.48
VPS39-208ENST00000564994 RPL37P61927 97 aaKnown RBP5.78□□□□□ -1.48
VPS39-208ENST00000564994 MT1HP80294 61 aa5.78□□□□□ -1.48
VPS39-208ENST00000564994 HIST1H4GQ99525 98 aa5.78□□□□□ -1.48
VPS39-208ENST00000564994 TRBV7-7A0A0K0K1E9 115 aa5.77□□□□□ -1.49
VPS39-208ENST00000564994 OCIAD2Q56VL3 154 aa5.77□□□□□ -1.49
VPS39-208ENST00000564994 Q6JHZ5 121 aa5.77□□□□□ -1.49
VPS39-208ENST00000564994 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.77□□□□□ -1.49
VPS39-208ENST00000564994 CLEC2BQ92478 149 aa5.77□□□□□ -1.49
VPS39-208ENST00000564994 DLEU1O43261 78 aa5.76□□□□□ -1.49
VPS39-208ENST00000564994 BVES-AS1Q5T3Y7 98 aa5.76□□□□□ -1.49
VPS39-208ENST00000564994 CFC1BP0CG36 223 aa5.75□□□□□ -1.49
VPS39-208ENST00000564994 CFC1P0CG37 223 aa5.75□□□□□ -1.49
VPS39-208ENST00000564994 C14orf144Q96I85 54 aa5.75□□□□□ -1.49
VPS39-208ENST00000564994 H3BUT2 72 aa5.74□□□□□ -1.49
VPS39-208ENST00000564994 PPDPFLQ8WWR9 84 aa5.74□□□□□ -1.49
VPS39-208ENST00000564994 FLGP20930 4061 aaPredicted RBP5.73□□□□□ -1.49
VPS39-208ENST00000564994 C2orf91Q6ZV80 131 aa5.72□□□□□ -1.49
VPS39-208ENST00000564994 FAM218AQ96MZ4 157 aa5.72□□□□□ -1.49
VPS39-208ENST00000564994 SNHG12Q9BXW3 62 aa5.72□□□□□ -1.49
VPS39-208ENST00000564994 HIGD1BQ9P298 99 aa5.72□□□□□ -1.49
VPS39-208ENST00000564994 PAM16Q9Y3D7 125 aa5.72□□□□□ -1.49
VPS39-208ENST00000564994 A0A0B4J2C4 111 aa5.71□□□□□ -1.5
VPS39-208ENST00000564994 SPATA45Q537H7 98 aa5.71□□□□□ -1.5
VPS39-208ENST00000564994 RAB37Q96AX2 223 aa5.71□□□□□ -1.5
VPS39-208ENST00000564994 OBSCN-AS1Q96MR7 158 aa5.69□□□□□ -1.5
VPS39-208ENST00000564994 H0YGX0 51 aa5.68□□□□□ -1.5
VPS39-208ENST00000564994 LST1O00453 97 aa5.68□□□□□ -1.5
VPS39-208ENST00000564994 LORP23490 312 aaPredicted RBP5.68□□□□□ -1.5
VPS39-208ENST00000564994 VAMP8Q9BV40 100 aa5.68□□□□□ -1.5
VPS39-208ENST00000564994 SMIM6P0DI80 62 aa5.67□□□□□ -1.5
VPS39-208ENST00000564994 NDUFV3P56181 108 aaKnown RBP5.67□□□□□ -1.5
VPS39-208ENST00000564994 KRTAP10-6P60371 365 aaPredicted RBP5.67□□□□□ -1.5
VPS39-208ENST00000564994 Q6Q795 121 aa5.67□□□□□ -1.5
VPS39-208ENST00000564994 CEND1Q8N111 149 aa5.67□□□□□ -1.5
VPS39-208ENST00000564994 FXYD2P54710 66 aa5.66□□□□□ -1.5
VPS39-208ENST00000564994 Q75L30 129 aa5.66□□□□□ -1.5
VPS39-208ENST00000564994 COX6B2Q6YFQ2 88 aa5.65□□□□□ -1.5
VPS39-208ENST00000564994 PRO1854Q9UHT4 67 aa5.65□□□□□ -1.5
VPS39-208ENST00000564994 SNCGO76070 127 aa5.64□□□□□ -1.51
VPS39-208ENST00000564994 TEN1Q86WV5 123 aa5.64□□□□□ -1.51
VPS39-208ENST00000564994 A0A087WSZ3 146 aa5.63□□□□□ -1.51
VPS39-208ENST00000564994 A0A1B0GX51 115 aa5.63□□□□□ -1.51
VPS39-208ENST00000564994 H3BMG7 143 aa5.63□□□□□ -1.51
VPS39-208ENST00000564994 M0R2T5 61 aa5.63□□□□□ -1.51
VPS39-208ENST00000564994 TRIAP1O43715 76 aa5.63□□□□□ -1.51
VPS39-208ENST00000564994 ATP11AUNQ6ZP68 121 aa5.63□□□□□ -1.51
VPS39-208ENST00000564994 Q96NJ1 140 aa5.63□□□□□ -1.51
VPS39-208ENST00000564994 CRCT1Q9UGL9 99 aa5.63□□□□□ -1.51
VPS39-208ENST00000564994 SS18L2Q9UHA2 77 aa5.63□□□□□ -1.51
VPS39-208ENST00000564994 TMEM238LA0A1B0GVL6 79 aa5.62□□□□□ -1.51
VPS39-208ENST00000564994 A6NJY4 79 aa5.62□□□□□ -1.51
VPS39-208ENST00000564994 FABP2P12104 132 aa5.62□□□□□ -1.51
VPS39-208ENST00000564994 A0A1W2PNM2 257 aa5.61□□□□□ -1.51
VPS39-208ENST00000564994 C20orf166-AS1Q96NR2 134 aa5.61□□□□□ -1.51
VPS39-208ENST00000564994 PYY3Q5JQD4 70 aa5.6□□□□□ -1.51
VPS39-208ENST00000564994 A8MUU9 505 aa5.59□□□□□ -1.51
VPS39-208ENST00000564994 K7ERJ3 54 aa5.59□□□□□ -1.51
VPS39-208ENST00000564994 GHRHP01286 108 aa5.59□□□□□ -1.51
VPS39-208ENST00000564994 DSCR10P59022 87 aa5.58□□□□□ -1.52
VPS39-208ENST00000564994 PCP4L1A6NKN8 68 aa5.57□□□□□ -1.52
VPS39-208ENST00000564994 SMCPP49901 116 aaPredicted RBP5.57□□□□□ -1.52
VPS39-208ENST00000564994 HSD52Q0P140 79 aa5.57□□□□□ -1.52
VPS39-208ENST00000564994 A0A1B0GV72 72 aa5.56□□□□□ -1.52
VPS39-208ENST00000564994 ORMDL1Q9P0S3 153 aa5.56□□□□□ -1.52
VPS39-208ENST00000564994 DNAL4O96015 105 aa5.55□□□□□ -1.52
VPS39-208ENST00000564994 PSMB2P49721 201 aa5.55□□□□□ -1.52
VPS39-208ENST00000564994 ANKRD29Q8N6D5 301 aa5.55□□□□□ -1.52
VPS39-208ENST00000564994 SIGMAR1Q99720 223 aa5.55□□□□□ -1.52
VPS39-208ENST00000564994 TRBV7-4A0A0J9YYF1 115 aa5.54□□□□□ -1.52
VPS39-208ENST00000564994 KRTAP16-1A8MUX0 517 aa5.53□□□□□ -1.52
VPS39-208ENST00000564994 TSTD3H0UI37 97 aa5.53□□□□□ -1.52
VPS39-208ENST00000564994 IGKV4-1P06312 121 aa5.53□□□□□ -1.52
VPS39-208ENST00000564994 NOTCH2NLQ7Z3S9 236 aa5.53□□□□□ -1.52
VPS39-208ENST00000564994 H3BQ85 93 aa5.52□□□□□ -1.53
VPS39-208ENST00000564994 TMEM256-PLSCR3K7ERE1 68 aa5.52□□□□□ -1.53
VPS39-208ENST00000564994 LINC00313P59037 77 aa5.52□□□□□ -1.53
VPS39-208ENST00000564994 DEFB116Q30KQ4 102 aa5.52□□□□□ -1.53
VPS39-208ENST00000564994 COX6CP09669 75 aa5.51□□□□□ -1.53
VPS39-208ENST00000564994 LINC00472Q9H8W2 130 aa5.51□□□□□ -1.53
VPS39-208ENST00000564994 UQCR10Q9UDW1 63 aa5.51□□□□□ -1.53
VPS39-208ENST00000564994 CCKP06307 115 aa5.5□□□□□ -1.53
VPS39-208ENST00000564994 UBE2V1Q13404 147 aa5.5□□□□□ -1.53
VPS39-208ENST00000564994 TRACP01848 142 aa5.48□□□□□ -1.53
VPS39-208ENST00000564994 TRBV20-1A0A075B6N2 111 aa5.47□□□□□ -1.53
VPS39-208ENST00000564994 KRTAP9-8Q9BYQ0 159 aa5.47□□□□□ -1.53
VPS39-208ENST00000564994 IGHV6-1A0A0B4J1U7 121 aa5.46□□□□□ -1.54
VPS39-208ENST00000564994 USH2AO75445 5202 aa5.45□□□□□ -1.54
VPS39-208ENST00000564994 SCGB1C2P0DMR2 95 aa5.45□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms