RNA–Protein interactions for RNA: ENST00000563220.1

COMMD4-208, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 1,897 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-208ENST00000563220 UBE2AP49459 152 aa11.12□□□□□ -0.63
COMMD4-208ENST00000563220 PSORS1C2Q9UIG4 136 aa11.12□□□□□ -0.63
COMMD4-208ENST00000563220 RBM3P98179 157 aaKnown RBP11.12□□□□□ -0.63
COMMD4-208ENST00000563220 KRTAP13-1Q8IUC0 172 aa11.12□□□□□ -0.63
COMMD4-208ENST00000563220 IGLV5-48A0A075B6I7 105 aa11.11□□□□□ -0.63
COMMD4-208ENST00000563220 PDE6GP18545 87 aa11.1□□□□□ -0.63
COMMD4-208ENST00000563220 Q6ZQT0 140 aa11.1□□□□□ -0.63
COMMD4-208ENST00000563220 SCXQ7RTU7 201 aa11.1□□□□□ -0.63
COMMD4-208ENST00000563220 IGKV3D-7A0A0C4DH55 119 aa11.1□□□□□ -0.63
COMMD4-208ENST00000563220 ATOX1O00244 68 aa11.1□□□□□ -0.63
COMMD4-208ENST00000563220 HAMPP81172 84 aa11.1□□□□□ -0.63
COMMD4-208ENST00000563220 A0A1B0GVY2 172 aa11.09□□□□□ -0.63
COMMD4-208ENST00000563220 UQCRQO14949 82 aa11.08□□□□□ -0.64
COMMD4-208ENST00000563220 C3orf22Q8N5N4 141 aa11.08□□□□□ -0.64
COMMD4-208ENST00000563220 C1orf137Q5JT78 98 aa11.06□□□□□ -0.64
COMMD4-208ENST00000563220 UBL5Q9BZL1 73 aa11.06□□□□□ -0.64
COMMD4-208ENST00000563220 SS18L2Q9UHA2 77 aa11.05□□□□□ -0.64
COMMD4-208ENST00000563220 PKHD1P08F94 4074 aa11.04□□□□□ -0.64
COMMD4-208ENST00000563220 DSCR8Q96T75 97 aa11.04□□□□□ -0.64
COMMD4-208ENST00000563220 LRP1BQ9NZR2 4599 aa11.04□□□□□ -0.64
COMMD4-208ENST00000563220 COX7CP15954 63 aa11.04□□□□□ -0.64
COMMD4-208ENST00000563220 SMIM29Q86T20 159 aa11.04□□□□□ -0.64
COMMD4-208ENST00000563220 SRRM2Q9UQ35 2752 aaKnown RBP11.04□□□□□ -0.64
COMMD4-208ENST00000563220 TRBV7-4A0A0J9YYF1 115 aa11.02□□□□□ -0.64
COMMD4-208ENST00000563220 DYNC1H1Q14204 4646 aaKnown RBP11.01□□□□□ -0.65
COMMD4-208ENST00000563220 ZNF861PO60384 105 aa11□□□□□ -0.65
COMMD4-208ENST00000563220 C9orf153Q5TBE3 101 aa10.99□□□□□ -0.65
COMMD4-208ENST00000563220 A0A087WVE0 104 aa10.98□□□□□ -0.65
COMMD4-208ENST00000563220 IGLV7-43P04211 117 aa10.98□□□□□ -0.65
COMMD4-208ENST00000563220 SPRR1BP22528 89 aa10.98□□□□□ -0.65
COMMD4-208ENST00000563220 CRYGAP11844 174 aa10.97□□□□□ -0.65
COMMD4-208ENST00000563220 SERP2Q8N6R1 65 aa10.96□□□□□ -0.65
COMMD4-208ENST00000563220 Q6ZVQ6 151 aa10.94□□□□□ -0.66
COMMD4-208ENST00000563220 RYR3Q15413 4870 aa10.94□□□□□ -0.66
COMMD4-208ENST00000563220 SPRR4Q96PI1 79 aa10.93□□□□□ -0.66
COMMD4-208ENST00000563220 CXCL6P80162 114 aa10.92□□□□□ -0.66
COMMD4-208ENST00000563220 F8WEM9 126 aa10.9□□□□□ -0.66
COMMD4-208ENST00000563220 IGLV8-61A0A075B6I0 122 aa10.89□□□□□ -0.67
COMMD4-208ENST00000563220 A0A0G2JQZ4 141 aa10.89□□□□□ -0.67
COMMD4-208ENST00000563220 LINC00483Q53H64 154 aa10.89□□□□□ -0.67
COMMD4-208ENST00000563220 A0A1W2PNM2 257 aa10.87□□□□□ -0.67
COMMD4-208ENST00000563220 ZNF706Q9Y5V0 76 aaPredicted RBP10.87□□□□□ -0.67
COMMD4-208ENST00000563220 ANAPC11Q9NYG5 84 aa10.87□□□□□ -0.67
COMMD4-208ENST00000563220 IGFL1Q6UW32 110 aa10.86□□□□□ -0.67
COMMD4-208ENST00000563220 APOBP04114 4563 aaKnown RBP10.86□□□□□ -0.67
COMMD4-208ENST00000563220 VPS13BQ7Z7G8 4022 aa10.85□□□□□ -0.67
COMMD4-208ENST00000563220 Q8NBF4 154 aa10.83□□□□□ -0.68
COMMD4-208ENST00000563220 SMR3BP02814 79 aaPredicted RBP10.81□□□□□ -0.68
COMMD4-208ENST00000563220 SMIM20Q8N5G0 67 aa10.81□□□□□ -0.68
COMMD4-208ENST00000563220 IGLV9-49A0A0B4J1Y8 123 aa10.81□□□□□ -0.68
COMMD4-208ENST00000563220 A0A1B0GW54 56 aa10.81□□□□□ -0.68
COMMD4-208ENST00000563220 TRAV7A0A075B6U4 112 aa10.78□□□□□ -0.68
COMMD4-208ENST00000563220 TMEM258P61165 79 aa10.77□□□□□ -0.69
COMMD4-208ENST00000563220 RPL37AP61513 92 aaKnown RBP10.77□□□□□ -0.69
COMMD4-208ENST00000563220 CYSTM1Q9H1C7 97 aa10.76□□□□□ -0.69
COMMD4-208ENST00000563220 FAT1Q14517 4588 aa10.74□□□□□ -0.69
COMMD4-208ENST00000563220 MOBPQ13875 183 aa10.73□□□□□ -0.69
COMMD4-208ENST00000563220 NREPQ16612 68 aa10.73□□□□□ -0.69
COMMD4-208ENST00000563220 RPS28P62857 69 aaKnown RBP10.71□□□□□ -0.69
COMMD4-208ENST00000563220 KRTAP10-4P60372 401 aaPredicted RBP10.7□□□□□ -0.7
COMMD4-208ENST00000563220 A0A087WSZ3 146 aa10.69□□□□□ -0.7
COMMD4-208ENST00000563220 KRTAP1-4P0C5Y4 121 aa10.69□□□□□ -0.7
COMMD4-208ENST00000563220 A0A087X002 238 aa10.68□□□□□ -0.7
COMMD4-208ENST00000563220 J3KT08 172 aa10.67□□□□□ -0.7
COMMD4-208ENST00000563220 IGKV4-1P06312 121 aa10.67□□□□□ -0.7
COMMD4-208ENST00000563220 SPINK6Q6UWN8 80 aa10.67□□□□□ -0.7
COMMD4-208ENST00000563220 BPY2O14599 106 aa10.66□□□□□ -0.7
COMMD4-208ENST00000563220 C20orf197Q8N268 126 aa10.66□□□□□ -0.7
COMMD4-208ENST00000563220 KRTAP13-2Q52LG2 175 aa10.65□□□□□ -0.7
COMMD4-208ENST00000563220 KLKP1Q107X0 134 aa10.64□□□□□ -0.71
COMMD4-208ENST00000563220 FAM229BQ4G0N7 80 aa10.64□□□□□ -0.71
COMMD4-208ENST00000563220 HRCT1Q6UXD1 115 aa10.64□□□□□ -0.71
COMMD4-208ENST00000563220 SSBP3-AS1Q7Z2R9 100 aa10.62□□□□□ -0.71
COMMD4-208ENST00000563220 PLA2G1BP04054 148 aaKnown RBP10.61□□□□□ -0.71
COMMD4-208ENST00000563220 CDK2AP2O75956 126 aa10.6□□□□□ -0.71
COMMD4-208ENST00000563220 HSPG2P98160 4391 aa10.6□□□□□ -0.71
COMMD4-208ENST00000563220 Q8N9L7 120 aa10.59□□□□□ -0.71
COMMD4-208ENST00000563220 H7BZZ5 65 aa10.57□□□□□ -0.72
COMMD4-208ENST00000563220 DEFB116Q30KQ4 102 aa10.57□□□□□ -0.72
COMMD4-208ENST00000563220 NDUFC1O43677 76 aa10.55□□□□□ -0.72
COMMD4-208ENST00000563220 RYR1P21817 5038 aa10.55□□□□□ -0.72
COMMD4-208ENST00000563220 OCR1Q9BZK8 76 aa10.55□□□□□ -0.72
COMMD4-208ENST00000563220 EPPK1P58107 5090 aaKnown RBP10.55□□□□□ -0.72
COMMD4-208ENST00000563220 LINC00472Q9H8W2 130 aa10.54□□□□□ -0.72
COMMD4-208ENST00000563220 FAM229AH3BQW9 127 aa10.53□□□□□ -0.72
COMMD4-208ENST00000563220 DSCR10P59022 87 aa10.53□□□□□ -0.72
COMMD4-208ENST00000563220 FAM236DA0A1B0GTK5 79 aa10.52□□□□□ -0.73
COMMD4-208ENST00000563220 FAM236CP0DP71 79 aa10.52□□□□□ -0.73
COMMD4-208ENST00000563220 CD164Q04900 197 aa10.52□□□□□ -0.73
COMMD4-208ENST00000563220 SVIPQ8NHG7 77 aa10.51□□□□□ -0.73
COMMD4-208ENST00000563220 KRTAP17-1Q9BYP8 105 aa10.51□□□□□ -0.73
COMMD4-208ENST00000563220 PRR26Q8N8Z3 221 aa10.51□□□□□ -0.73
COMMD4-208ENST00000563220 SNURFQ9Y675 71 aa10.5□□□□□ -0.73
COMMD4-208ENST00000563220 Q5VSD8 79 aa10.49□□□□□ -0.73
COMMD4-208ENST00000563220 TYMSOSQ8TAI1 123 aa10.49□□□□□ -0.73
COMMD4-208ENST00000563220 TMEM254Q8TBM7 123 aa10.49□□□□□ -0.73
COMMD4-208ENST00000563220 Q96NJ1 140 aa10.49□□□□□ -0.73
COMMD4-208ENST00000563220 KIAA1109Q2LD37 5005 aa10.47□□□□□ -0.73
COMMD4-208ENST00000563220 K7EQZ3 153 aa10.47□□□□□ -0.73
COMMD4-208ENST00000563220 PKHD1L1Q86WI1 4243 aa10.46□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 86.4 ms