RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 Q1RN00 199 aa9.4□□□□□ -0.9
CLK3-210ENST00000563112 HRCT1Q6UXD1 115 aa9.4□□□□□ -0.9
CLK3-210ENST00000563112 SEC61BP60468 96 aaKnown RBP9.39□□□□□ -0.91
CLK3-210ENST00000563112 UBE2V1Q13404 147 aa9.39□□□□□ -0.91
CLK3-210ENST00000563112 ASB16-AS1Q495Z4 193 aa9.39□□□□□ -0.91
CLK3-210ENST00000563112 CEND1Q8N111 149 aa9.39□□□□□ -0.91
CLK3-210ENST00000563112 NHP2Q9NX24 153 aaKnown RBP9.39□□□□□ -0.91
CLK3-210ENST00000563112 C9orf118A6NHY6 69 aa9.37□□□□□ -0.91
CLK3-210ENST00000563112 TAX1BP3O14907 124 aa9.37□□□□□ -0.91
CLK3-210ENST00000563112 CD164Q04900 197 aa9.36□□□□□ -0.91
CLK3-210ENST00000563112 LYRM7Q5U5X0 104 aa9.36□□□□□ -0.91
CLK3-210ENST00000563112 FABP2P12104 132 aa9.35□□□□□ -0.91
CLK3-210ENST00000563112 SMIM11BQ8TCY0 68 aa9.35□□□□□ -0.91
CLK3-210ENST00000563112 IGLV5-48A0A075B6I7 105 aa9.34□□□□□ -0.91
CLK3-210ENST00000563112 H7C2G1 150 aa9.34□□□□□ -0.91
CLK3-210ENST00000563112 SMIM29Q86T20 159 aa9.33□□□□□ -0.92
CLK3-210ENST00000563112 LINC01547P58512 204 aaPredicted RBP9.32□□□□□ -0.92
CLK3-210ENST00000563112 XP32Q5T750 250 aa9.32□□□□□ -0.92
CLK3-210ENST00000563112 LCE2AQ5TA79 106 aaPredicted RBP9.31□□□□□ -0.92
CLK3-210ENST00000563112 A0A1W2PPM0 123 aa9.28□□□□□ -0.92
CLK3-210ENST00000563112 H3BUT2 72 aa9.28□□□□□ -0.92
CLK3-210ENST00000563112 FXYD2P54710 66 aa9.28□□□□□ -0.92
CLK3-210ENST00000563112 F8WEM9 126 aa9.27□□□□□ -0.93
CLK3-210ENST00000563112 K7EP34 96 aa9.27□□□□□ -0.93
CLK3-210ENST00000563112 Q5XG85 94 aa9.26□□□□□ -0.93
CLK3-210ENST00000563112 LINC00575Q6W349 94 aa9.26□□□□□ -0.93
CLK3-210ENST00000563112 RAB37Q96AX2 223 aa9.26□□□□□ -0.93
CLK3-210ENST00000563112 SPCS1Q9Y6A9 102 aa9.26□□□□□ -0.93
CLK3-210ENST00000563112 hADV29S1A0JD25 119 aa9.25□□□□□ -0.93
CLK3-210ENST00000563112 A0A0G2JQZ4 141 aa9.23□□□□□ -0.93
CLK3-210ENST00000563112 C9orf92A6NGG3 77 aa9.23□□□□□ -0.93
CLK3-210ENST00000563112 KRTAP4-1Q9BYQ7 146 aa9.23□□□□□ -0.93
CLK3-210ENST00000563112 Q6ZQY7 126 aa9.22□□□□□ -0.93
CLK3-210ENST00000563112 TCL1BO95988 128 aa9.21□□□□□ -0.94
CLK3-210ENST00000563112 C1orf195Q5TG92 126 aa9.21□□□□□ -0.94
CLK3-210ENST00000563112 K7ERU9 68 aa9.2□□□□□ -0.94
CLK3-210ENST00000563112 TRBV20-1A0A075B6N2 111 aa9.19□□□□□ -0.94
CLK3-210ENST00000563112 A0A0B4J2C4 111 aa9.19□□□□□ -0.94
CLK3-210ENST00000563112 PRO1854Q9UHT4 67 aa9.19□□□□□ -0.94
CLK3-210ENST00000563112 F8W1H4 67 aa9.18□□□□□ -0.94
CLK3-210ENST00000563112 Q6JHZ5 121 aa9.18□□□□□ -0.94
CLK3-210ENST00000563112 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.18□□□□□ -0.94
CLK3-210ENST00000563112 J3QR89 54 aa9.17□□□□□ -0.94
CLK3-210ENST00000563112 K7ERJ3 54 aa9.16□□□□□ -0.94
CLK3-210ENST00000563112 PCOTHQ58A44 107 aa9.16□□□□□ -0.94
CLK3-210ENST00000563112 COX6CP09669 75 aa9.15□□□□□ -0.94
CLK3-210ENST00000563112 OCIAD2Q56VL3 154 aa9.15□□□□□ -0.94
CLK3-210ENST00000563112 PPDPFLQ8WWR9 84 aa9.15□□□□□ -0.94
CLK3-210ENST00000563112 IGLV8-61A0A075B6I0 122 aa9.14□□□□□ -0.95
CLK3-210ENST00000563112 SNCGO76070 127 aa9.14□□□□□ -0.95
CLK3-210ENST00000563112 SCGB1C2P0DMR2 95 aa9.14□□□□□ -0.95
CLK3-210ENST00000563112 CLEC2BQ92478 149 aa9.14□□□□□ -0.95
CLK3-210ENST00000563112 PSMB2P49721 201 aa9.13□□□□□ -0.95
CLK3-210ENST00000563112 KRTAP9-2Q9BYQ4 174 aa9.13□□□□□ -0.95
CLK3-210ENST00000563112 CFC1BP0CG36 223 aa9.12□□□□□ -0.95
CLK3-210ENST00000563112 CFC1P0CG37 223 aa9.12□□□□□ -0.95
CLK3-210ENST00000563112 IGFL1Q6UW32 110 aa9.11□□□□□ -0.95
CLK3-210ENST00000563112 TRBV7-7A0A0K0K1E9 115 aa9.1□□□□□ -0.95
CLK3-210ENST00000563112 H0YGX0 51 aa9.1□□□□□ -0.95
CLK3-210ENST00000563112 NAA38Q9BRA0 125 aaKnown RBP9.1□□□□□ -0.95
CLK3-210ENST00000563112 ATXN8Q156A1 80 aa9.07□□□□□ -0.96
CLK3-210ENST00000563112 RPL37P61927 97 aaKnown RBP9.05□□□□□ -0.96
CLK3-210ENST00000563112 H3BMG7 143 aa9.04□□□□□ -0.96
CLK3-210ENST00000563112 GHRHP01286 108 aa9.04□□□□□ -0.96
CLK3-210ENST00000563112 LST1O00453 97 aa9.01□□□□□ -0.97
CLK3-210ENST00000563112 VPS25Q9BRG1 176 aa9.01□□□□□ -0.97
CLK3-210ENST00000563112 A0A1B0GX51 115 aa9□□□□□ -0.97
CLK3-210ENST00000563112 NDUFV3P56181 108 aaKnown RBP9□□□□□ -0.97
CLK3-210ENST00000563112 FAM218AQ96MZ4 157 aa9□□□□□ -0.97
CLK3-210ENST00000563112 SS18L2Q9UHA2 77 aa9□□□□□ -0.97
CLK3-210ENST00000563112 LCE2CQ5TA81 110 aa8.99□□□□□ -0.97
CLK3-210ENST00000563112 Q6Q795 121 aa8.97□□□□□ -0.97
CLK3-210ENST00000563112 TEN1Q86WV5 123 aa8.97□□□□□ -0.97
CLK3-210ENST00000563112 KRTAP19-2Q3LHN2 52 aa8.96□□□□□ -0.98
CLK3-210ENST00000563112 H3BT86 120 aa8.95□□□□□ -0.98
CLK3-210ENST00000563112 OBSCN-AS1Q96MR7 158 aa8.95□□□□□ -0.98
CLK3-210ENST00000563112 PRO0461Q9UI25 63 aa8.95□□□□□ -0.98
CLK3-210ENST00000563112 TRIAP1O43715 76 aa8.94□□□□□ -0.98
CLK3-210ENST00000563112 ETDBQ3ZM63 59 aa8.94□□□□□ -0.98
CLK3-210ENST00000563112 ATP11AUNQ6ZP68 121 aa8.93□□□□□ -0.98
CLK3-210ENST00000563112 C9JAW5 83 aa8.92□□□□□ -0.98
CLK3-210ENST00000563112 ANKRD29Q8N6D5 301 aa8.92□□□□□ -0.98
CLK3-210ENST00000563112 DNAL4O96015 105 aa8.91□□□□□ -0.98
CLK3-210ENST00000563112 MT1HP80294 61 aa8.91□□□□□ -0.98
CLK3-210ENST00000563112 COX6B2Q6YFQ2 88 aa8.91□□□□□ -0.98
CLK3-210ENST00000563112 A0A087WSZ3 146 aa8.9□□□□□ -0.98
CLK3-210ENST00000563112 Q75L30 129 aa8.9□□□□□ -0.98
CLK3-210ENST00000563112 H3BQ85 93 aa8.89□□□□□ -0.99
CLK3-210ENST00000563112 TRACP01848 142 aa8.89□□□□□ -0.99
CLK3-210ENST00000563112 Q96NJ1 140 aa8.89□□□□□ -0.99
CLK3-210ENST00000563112 ORMDL1Q9P0S3 153 aa8.88□□□□□ -0.99
CLK3-210ENST00000563112 LCE2DQ5TA82 110 aaPredicted RBP8.86□□□□□ -0.99
CLK3-210ENST00000563112 KRTAP9-6A0A140TA67 174 aa8.84□□□□□ -0.99
CLK3-210ENST00000563112 A0A1W2PNM2 257 aa8.83□□□□□ -1
CLK3-210ENST00000563112 TMEM256-PLSCR3K7ERE1 68 aa8.83□□□□□ -1
CLK3-210ENST00000563112 M0R2T5 61 aa8.83□□□□□ -1
CLK3-210ENST00000563112 SMCPP49901 116 aaPredicted RBP8.83□□□□□ -1
CLK3-210ENST00000563112 MTURNQ8N3F0 131 aa8.82□□□□□ -1
CLK3-210ENST00000563112 SIGMAR1Q99720 223 aa8.82□□□□□ -1
CLK3-210ENST00000563112 TRBV7-4A0A0J9YYF1 115 aa8.81□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms