RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 RAB37Q96AX2 223 aa4.99□□□□□ -1.61
HDDC3-204ENST00000559834 ZNF815PA8K554 130 aa4.98□□□□□ -1.61
HDDC3-204ENST00000559834 K7ERJ3 54 aa4.98□□□□□ -1.61
HDDC3-204ENST00000559834 MT1HP80294 61 aa4.98□□□□□ -1.61
HDDC3-204ENST00000559834 CD164Q04900 197 aa4.98□□□□□ -1.61
HDDC3-204ENST00000559834 KRTAP19-2Q3LHN2 52 aa4.98□□□□□ -1.61
HDDC3-204ENST00000559834 NHP2Q9NX24 153 aaKnown RBP4.98□□□□□ -1.61
HDDC3-204ENST00000559834 SPANXCQ9NY87 97 aa4.98□□□□□ -1.61
HDDC3-204ENST00000559834 K7EP34 96 aa4.97□□□□□ -1.61
HDDC3-204ENST00000559834 EIF4EBP3O60516 100 aaPredicted RBP4.97□□□□□ -1.61
HDDC3-204ENST00000559834 HIST1H4GQ99525 98 aa4.97□□□□□ -1.61
HDDC3-204ENST00000559834 A0A1W2PPM0 123 aa4.96□□□□□ -1.62
HDDC3-204ENST00000559834 H7C2G1 150 aa4.96□□□□□ -1.62
HDDC3-204ENST00000559834 GTF2H5Q6ZYL4 71 aa4.96□□□□□ -1.62
HDDC3-204ENST00000559834 LINC00308Q8TCZ7 52 aa4.96□□□□□ -1.62
HDDC3-204ENST00000559834 SPANXDQ9BXN6 97 aa4.96□□□□□ -1.62
HDDC3-204ENST00000559834 TEX49A0A1B0GTD5 131 aa4.95□□□□□ -1.62
HDDC3-204ENST00000559834 TIMM17BO60830 172 aa4.95□□□□□ -1.62
HDDC3-204ENST00000559834 COX7BP24311 80 aa4.95□□□□□ -1.62
HDDC3-204ENST00000559834 SCGB1D4Q6XE38 83 aa4.95□□□□□ -1.62
HDDC3-204ENST00000559834 DEFB105AQ8NG35 78 aa4.95□□□□□ -1.62
HDDC3-204ENST00000559834 SPCS1Q9Y6A9 102 aa4.95□□□□□ -1.62
HDDC3-204ENST00000559834 M0R2T5 61 aa4.94□□□□□ -1.62
HDDC3-204ENST00000559834 FABP2P12104 132 aa4.94□□□□□ -1.62
HDDC3-204ENST00000559834 Q1RN00 199 aa4.94□□□□□ -1.62
HDDC3-204ENST00000559834 Q5XG85 94 aa4.94□□□□□ -1.62
HDDC3-204ENST00000559834 A0A1B0GWB2 263 aa4.93□□□□□ -1.62
HDDC3-204ENST00000559834 ELOF1P60002 83 aaKnown RBP4.93□□□□□ -1.62
HDDC3-204ENST00000559834 C6orf99Q4VX62 202 aa4.93□□□□□ -1.62
HDDC3-204ENST00000559834 TRBV7-6A0A0J9YX20 115 aa4.92□□□□□ -1.62
HDDC3-204ENST00000559834 TMEM238LA0A1B0GVL6 79 aa4.92□□□□□ -1.62
HDDC3-204ENST00000559834 A6NJY4 79 aa4.92□□□□□ -1.62
HDDC3-204ENST00000559834 LORP23490 312 aaPredicted RBP4.92□□□□□ -1.62
HDDC3-204ENST00000559834 KRTAP10-6P60371 365 aaPredicted RBP4.92□□□□□ -1.62
HDDC3-204ENST00000559834 COX6B2Q6YFQ2 88 aa4.92□□□□□ -1.62
HDDC3-204ENST00000559834 LITAFQ99732 161 aa4.92□□□□□ -1.62
HDDC3-204ENST00000559834 C1orf195Q5TG92 126 aa4.91□□□□□ -1.62
HDDC3-204ENST00000559834 RPL37P61927 97 aaKnown RBP4.9□□□□□ -1.63
HDDC3-204ENST00000559834 COPS9Q8WXC6 57 aa4.9□□□□□ -1.63
HDDC3-204ENST00000559834 TCL1BO95988 128 aa4.89□□□□□ -1.63
HDDC3-204ENST00000559834 OCIAD2Q56VL3 154 aa4.89□□□□□ -1.63
HDDC3-204ENST00000559834 SMIM29Q86T20 159 aa4.89□□□□□ -1.63
HDDC3-204ENST00000559834 IGLV5-48A0A075B6I7 105 aa4.88□□□□□ -1.63
HDDC3-204ENST00000559834 A4D1N5 150 aa4.88□□□□□ -1.63
HDDC3-204ENST00000559834 A0A0B4J2C4 111 aa4.86□□□□□ -1.63
HDDC3-204ENST00000559834 K7ERU9 68 aa4.86□□□□□ -1.63
HDDC3-204ENST00000559834 CFC1P0CG37 223 aa4.86□□□□□ -1.63
HDDC3-204ENST00000559834 IFITM1P13164 125 aa4.86□□□□□ -1.63
HDDC3-204ENST00000559834 LYRM7Q5U5X0 104 aa4.86□□□□□ -1.63
HDDC3-204ENST00000559834 MUSTN1Q8IVN3 82 aa4.86□□□□□ -1.63
HDDC3-204ENST00000559834 A0A0G2JQZ4 141 aa4.85□□□□□ -1.63
HDDC3-204ENST00000559834 H3BMG7 143 aa4.85□□□□□ -1.63
HDDC3-204ENST00000559834 MTURNQ8N3F0 131 aa4.85□□□□□ -1.63
HDDC3-204ENST00000559834 F8WEM9 126 aa4.84□□□□□ -1.63
HDDC3-204ENST00000559834 PSMB2P49721 201 aa4.84□□□□□ -1.63
HDDC3-204ENST00000559834 VPS25Q9BRG1 176 aa4.84□□□□□ -1.63
HDDC3-204ENST00000559834 PRO1854Q9UHT4 67 aa4.84□□□□□ -1.63
HDDC3-204ENST00000559834 PRO0461Q9UI25 63 aa4.84□□□□□ -1.63
HDDC3-204ENST00000559834 TRAV13-2A0A0B4J235 113 aa4.83□□□□□ -1.64
HDDC3-204ENST00000559834 F8W1H4 67 aa4.83□□□□□ -1.64
HDDC3-204ENST00000559834 ATP11AUNQ6ZP68 121 aa4.83□□□□□ -1.64
HDDC3-204ENST00000559834 Q6Q795 121 aa4.82□□□□□ -1.64
HDDC3-204ENST00000559834 SMCPP49901 116 aaPredicted RBP4.81□□□□□ -1.64
HDDC3-204ENST00000559834 ETDBQ3ZM63 59 aa4.81□□□□□ -1.64
HDDC3-204ENST00000559834 Q6JHZ5 121 aa4.81□□□□□ -1.64
HDDC3-204ENST00000559834 SMIM11BQ8TCY0 68 aa4.81□□□□□ -1.64
HDDC3-204ENST00000559834 TRBV20-1A0A075B6N2 111 aa4.8□□□□□ -1.64
HDDC3-204ENST00000559834 SCGB1C2P0DMR2 95 aa4.8□□□□□ -1.64
HDDC3-204ENST00000559834 C21orf62-AS1Q17RA5 79 aa4.8□□□□□ -1.64
HDDC3-204ENST00000559834 TRIAP1O43715 76 aa4.79□□□□□ -1.64
HDDC3-204ENST00000559834 Q75L30 129 aa4.79□□□□□ -1.64
HDDC3-204ENST00000559834 TRBV7-7A0A0K0K1E9 115 aa4.78□□□□□ -1.64
HDDC3-204ENST00000559834 hADV29S1A0JD25 119 aa4.78□□□□□ -1.64
HDDC3-204ENST00000559834 LINC00575Q6W349 94 aa4.78□□□□□ -1.64
HDDC3-204ENST00000559834 CLEC2BQ92478 149 aa4.78□□□□□ -1.64
HDDC3-204ENST00000559834 OBSCN-AS1Q96MR7 158 aa4.78□□□□□ -1.64
HDDC3-204ENST00000559834 C9JAW5 83 aa4.77□□□□□ -1.65
HDDC3-204ENST00000559834 J3QR89 54 aa4.77□□□□□ -1.65
HDDC3-204ENST00000559834 PCP4P48539 62 aa4.77□□□□□ -1.65
HDDC3-204ENST00000559834 ATXN8Q156A1 80 aa4.77□□□□□ -1.65
HDDC3-204ENST00000559834 ANKRD29Q8N6D5 301 aa4.77□□□□□ -1.65
HDDC3-204ENST00000559834 IGFL1Q6UW32 110 aa4.76□□□□□ -1.65
HDDC3-204ENST00000559834 Q6ZQY7 126 aa4.76□□□□□ -1.65
HDDC3-204ENST00000559834 TEN1Q86WV5 123 aa4.76□□□□□ -1.65
HDDC3-204ENST00000559834 LST1O00453 97 aa4.75□□□□□ -1.65
HDDC3-204ENST00000559834 PPDPFLQ8WWR9 84 aa4.75□□□□□ -1.65
HDDC3-204ENST00000559834 COX6CP09669 75 aa4.74□□□□□ -1.65
HDDC3-204ENST00000559834 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP4.74□□□□□ -1.65
HDDC3-204ENST00000559834 Q96NJ1 140 aa4.74□□□□□ -1.65
HDDC3-204ENST00000559834 H3BT86 120 aa4.72□□□□□ -1.65
HDDC3-204ENST00000559834 KRTAP9-7A8MTY7 169 aa4.71□□□□□ -1.66
HDDC3-204ENST00000559834 SS18L2Q9UHA2 77 aa4.71□□□□□ -1.66
HDDC3-204ENST00000559834 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.7□□□□□ -1.66
HDDC3-204ENST00000559834 SNCGO76070 127 aa4.7□□□□□ -1.66
HDDC3-204ENST00000559834 C20orf166-AS1Q96NR2 134 aa4.7□□□□□ -1.66
HDDC3-204ENST00000559834 SIGMAR1Q99720 223 aa4.69□□□□□ -1.66
HDDC3-204ENST00000559834 KRTAP9-8Q9BYQ0 159 aa4.69□□□□□ -1.66
HDDC3-204ENST00000559834 A8MUU9 505 aa4.68□□□□□ -1.66
HDDC3-204ENST00000559834 FLGP20930 4061 aaPredicted RBP4.68□□□□□ -1.66
HDDC3-204ENST00000559834 TRACP01848 142 aa4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms