RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 PLIN4Q96Q06 1357 aa0.06□□□□□ -2.4
USP3-209ENST00000558925 SAMD9Q5K651 1589 aa0.06□□□□□ -2.4
USP3-209ENST00000558925 CEP170BQ9Y4F5 1589 aaPredicted RBP0.06□□□□□ -2.4
USP3-209ENST00000558925 KMT2AQ03164 3969 aa0.06□□□□□ -2.4
USP3-209ENST00000558925 DYNC1H1Q14204 4646 aaKnown RBP0.06□□□□□ -2.4
USP3-209ENST00000558925 KIF14Q15058 1648 aa0.06□□□□□ -2.4
USP3-209ENST00000558925 ALKQ9UM73 1620 aa0.06□□□□□ -2.4
USP3-209ENST00000558925 PKHD1P08F94 4074 aa0.06□□□□□ -2.4
USP3-209ENST00000558925 UBR3Q6ZT12 1888 aa0.06□□□□□ -2.4
USP3-209ENST00000558925 WIZO95785 1651 aa0.06□□□□□ -2.4
USP3-209ENST00000558925 TNXBP22105 4242 aa0.06□□□□□ -2.4
USP3-209ENST00000558925 TRBV7-4A0A0J9YYF1 115 aa0.06□□□□□ -2.4
USP3-209ENST00000558925 MYMXA0A1B0GTQ4 84 aa0.06□□□□□ -2.4
USP3-209ENST00000558925 H3BQF6 201 aa0.06□□□□□ -2.4
USP3-209ENST00000558925 HMGN2P05204 90 aaKnown RBP0.06□□□□□ -2.4
USP3-209ENST00000558925 SPRR1BP22528 89 aa0.06□□□□□ -2.4
USP3-209ENST00000558925 SPRR1AP35321 89 aa0.06□□□□□ -2.4
USP3-209ENST00000558925 GNGT1P63211 74 aa0.06□□□□□ -2.4
USP3-209ENST00000558925 PEA15Q15121 130 aa0.06□□□□□ -2.4
USP3-209ENST00000558925 DEFB112Q30KQ8 113 aa0.06□□□□□ -2.4
USP3-209ENST00000558925 ZNF720Q7Z2F6 126 aa0.06□□□□□ -2.4
USP3-209ENST00000558925 U3KQA8 63 aa0.06□□□□□ -2.4
USP3-209ENST00000558925 A0A0G2JMZ2 1700 aa0.06□□□□□ -2.4
USP3-209ENST00000558925 PKD1L3Q7Z443 1732 aa0.06□□□□□ -2.4
USP3-209ENST00000558925 DOT1LQ8TEK3 1739 aa0.06□□□□□ -2.4
USP3-209ENST00000558925 ABCC3O15438 1527 aa0.06□□□□□ -2.4
USP3-209ENST00000558925 DCAF1Q9Y4B6 1507 aa0.06□□□□□ -2.4
USP3-209ENST00000558925 COL14A1Q05707 1796 aaKnown RBP0.06□□□□□ -2.4
USP3-209ENST00000558925 RB1CC1Q8TDY2 1594 aa0.06□□□□□ -2.4
USP3-209ENST00000558925 STARD9Q9P2P6 4700 aa0.06□□□□□ -2.4
USP3-209ENST00000558925 KIAA0556O60303 1618 aa0.05□□□□□ -2.4
USP3-209ENST00000558925 USP32Q8NFA0 1604 aa0.05□□□□□ -2.4
USP3-209ENST00000558925 EEA1Q15075 1411 aa0.05□□□□□ -2.4
USP3-209ENST00000558925 UACAQ9BZF9 1416 aa0.05□□□□□ -2.4
USP3-209ENST00000558925 CFAP43Q8NDM7 1665 aa0.05□□□□□ -2.4
USP3-209ENST00000558925 PRKDCP78527 4128 aaKnown RBP0.05□□□□□ -2.4
USP3-209ENST00000558925 DMDP11532 3685 aa0.05□□□□□ -2.4
USP3-209ENST00000558925 ATP7BP35670 1465 aa0.05□□□□□ -2.4
USP3-209ENST00000558925 ERVK-7P63135 1459 aa0.05□□□□□ -2.4
USP3-209ENST00000558925 MAGI2Q86UL8 1455 aa0.05□□□□□ -2.4
USP3-209ENST00000558925 ARHGAP35Q9NRY4 1499 aa0.05□□□□□ -2.4
USP3-209ENST00000558925 SUPT6HQ7KZ85 1726 aaKnown RBP0.05□□□□□ -2.4
USP3-209ENST00000558925 LTN1O94822 1766 aa0.05□□□□□ -2.4
USP3-209ENST00000558925 ABCC2Q92887 1545 aa0.05□□□□□ -2.4
USP3-209ENST00000558925 KIAA0586Q9BVV6 1533 aa0.05□□□□□ -2.4
USP3-209ENST00000558925 TRAV21A0A0B4J279 112 aa0.05□□□□□ -2.4
USP3-209ENST00000558925 H3BUT2 72 aa0.05□□□□□ -2.4
USP3-209ENST00000558925 CFDP00746 253 aaPredicted RBP0.05□□□□□ -2.4
USP3-209ENST00000558925 SMR3BP02814 79 aaPredicted RBP0.05□□□□□ -2.4
USP3-209ENST00000558925 S100A3P33764 101 aa0.05□□□□□ -2.4
USP3-209ENST00000558925 SNRPFP62306 86 aaKnown RBP0.05□□□□□ -2.4
USP3-209ENST00000558925 HMGN3Q15651 99 aa0.05□□□□□ -2.4
USP3-209ENST00000558925 PIGYQ3MUY2 71 aa0.05□□□□□ -2.4
USP3-209ENST00000558925 BVES-AS1Q5T3Y7 98 aa0.05□□□□□ -2.4
USP3-209ENST00000558925 HSPG2P98160 4391 aa0.05□□□□□ -2.4
USP3-209ENST00000558925 POLR1AO95602 1720 aaPredicted RBP0.04□□□□□ -2.4
USP3-209ENST00000558925 TJP1Q07157 1748 aa0.04□□□□□ -2.4
USP3-209ENST00000558925 QSER1Q2KHR3 1735 aa0.04□□□□□ -2.4
USP3-209ENST00000558925 LRRIQ1Q96JM4 1722 aa0.04□□□□□ -2.4
USP3-209ENST00000558925 PKD1P98161 4303 aa0.04□□□□□ -2.4
USP3-209ENST00000558925 NKTRP30414 1462 aaKnown RBP0.04□□□□□ -2.4
USP3-209ENST00000558925 NCOA2Q15596 1464 aa0.04□□□□□ -2.4
USP3-209ENST00000558925 CCDC18Q5T9S5 1454 aa0.04□□□□□ -2.4
USP3-209ENST00000558925 SCN11AQ9UI33 1791 aa0.04□□□□□ -2.4
USP3-209ENST00000558925 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP0.04□□□□□ -2.4
USP3-209ENST00000558925 KDM5DQ9BY66 1539 aa0.04□□□□□ -2.4
USP3-209ENST00000558925 HECTD4Q9Y4D8 3996 aa0.04□□□□□ -2.4
USP3-209ENST00000558925 DIP2AQ14689 1571 aa0.04□□□□□ -2.4
USP3-209ENST00000558925 THOC2Q8NI27 1593 aaKnown RBP0.04□□□□□ -2.4
USP3-209ENST00000558925 CPSF4LA6NMK7 179 aaKnown RBP0.04□□□□□ -2.4
USP3-209ENST00000558925 CEBPZOSA8MTT3 80 aa0.04□□□□□ -2.4
USP3-209ENST00000558925 PRM1P04553 51 aa0.04□□□□□ -2.4
USP3-209ENST00000558925 IFI6P09912 130 aa0.04□□□□□ -2.4
USP3-209ENST00000558925 COX6B1P14854 86 aa0.04□□□□□ -2.4
USP3-209ENST00000558925 COX7BP24311 80 aa0.04□□□□□ -2.4
USP3-209ENST00000558925 SMIM11AP58511 58 aa0.04□□□□□ -2.4
USP3-209ENST00000558925 PLGLAQ15195 96 aa0.04□□□□□ -2.4
USP3-209ENST00000558925 DEFB109BQ30KR1 87 aa0.04□□□□□ -2.4
USP3-209ENST00000558925 H1FX-AS1Q4G0G2 97 aa0.04□□□□□ -2.4
USP3-209ENST00000558925 DEFB121Q5J5C9 76 aa0.04□□□□□ -2.4
USP3-209ENST00000558925 LINC00643Q86TS7 51 aa0.04□□□□□ -2.4
USP3-209ENST00000558925 DEFB105AQ8NG35 78 aa0.04□□□□□ -2.4
USP3-209ENST00000558925 SPRR2FQ96RM1 72 aa0.04□□□□□ -2.4
USP3-209ENST00000558925 S100A13Q99584 98 aa0.04□□□□□ -2.4
USP3-209ENST00000558925 MRPL34Q9BQ48 92 aaKnown RBP0.04□□□□□ -2.4
USP3-209ENST00000558925 ST20Q9HBF5 79 aa0.04□□□□□ -2.4
USP3-209ENST00000558925 RABAC1Q9UI14 185 aa0.04□□□□□ -2.4
USP3-209ENST00000558925 APLNQ9ULZ1 77 aa0.04□□□□□ -2.4
USP3-209ENST00000558925 MADDQ8WXG6 1647 aa0.04□□□□□ -2.4
USP3-209ENST00000558925 FAT2Q9NYQ8 4349 aa0.04□□□□□ -2.4
USP3-209ENST00000558925 DNAH7Q8WXX0 4024 aa0.04□□□□□ -2.4
USP3-209ENST00000558925 LRRC37AA6NMS7 1700 aa0.04□□□□□ -2.4
USP3-209ENST00000558925 LYSTQ99698 3801 aa0.04□□□□□ -2.4
USP3-209ENST00000558925 BCORQ6W2J9 1755 aa0.04□□□□□ -2.4
USP3-209ENST00000558925 ARFGEF2Q9Y6D5 1785 aa0.04□□□□□ -2.4
USP3-209ENST00000558925 DNAH1Q9P2D7 4330 aa0.04□□□□□ -2.4
USP3-209ENST00000558925 ASXL1Q8IXJ9 1541 aa0.03□□□□□ -2.4
USP3-209ENST00000558925 ADAMTS12P58397 1594 aa0.03□□□□□ -2.4
USP3-209ENST00000558925 PIK3C2BO00750 1634 aa0.03□□□□□ -2.4
USP3-209ENST00000558925 KIF21BO75037 1637 aa0.03□□□□□ -2.4
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms