RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 SSSCA1O60232 199 aa0.57□□□□□ -2.32
SCFD1-221ENST00000556534 DPH3P1Q9H4G8 78 aa0.57□□□□□ -2.32
SCFD1-221ENST00000556534 PROK2Q9HC23 129 aa0.57□□□□□ -2.32
SCFD1-221ENST00000556534 MYH4Q9Y623 1939 aa0.57□□□□□ -2.32
SCFD1-221ENST00000556534 TRBV7-3A0A075B6L6 115 aa0.56□□□□□ -2.32
SCFD1-221ENST00000556534 NMBP08949 121 aa0.56□□□□□ -2.32
SCFD1-221ENST00000556534 GCHFRP30047 84 aa0.56□□□□□ -2.32
SCFD1-221ENST00000556534 MRPS10P82664 201 aaKnown RBP0.56□□□□□ -2.32
SCFD1-221ENST00000556534 NDUFA4L2Q9NRX3 87 aa0.56□□□□□ -2.32
SCFD1-221ENST00000556534 SMR3BP02814 79 aaPredicted RBP0.55□□□□□ -2.32
SCFD1-221ENST00000556534 SPAG11BQ08648 103 aa0.55□□□□□ -2.32
SCFD1-221ENST00000556534 SPAG11AQ6PDA7 123 aa0.55□□□□□ -2.32
SCFD1-221ENST00000556534 R4GMQ9 66 aa0.55□□□□□ -2.32
SCFD1-221ENST00000556534 UBE2L5PA0A1B0GUS4 154 aa0.54□□□□□ -2.32
SCFD1-221ENST00000556534 M0R135 149 aa0.54□□□□□ -2.32
SCFD1-221ENST00000556534 UBE2L3P68036 154 aaKnown RBP0.54□□□□□ -2.32
SCFD1-221ENST00000556534 WHAMMP3Q1A5X7 153 aa0.54□□□□□ -2.32
SCFD1-221ENST00000556534 AMELXQ99217 191 aa0.54□□□□□ -2.32
SCFD1-221ENST00000556534 MGST2Q99735 147 aa0.54□□□□□ -2.32
SCFD1-221ENST00000556534 MUC17Q685J3 4493 aa0.54□□□□□ -2.32
SCFD1-221ENST00000556534 IFITM1P13164 125 aa0.53□□□□□ -2.32
SCFD1-221ENST00000556534 S100PP25815 95 aa0.53□□□□□ -2.32
SCFD1-221ENST00000556534 KRTAP19-6Q3LI70 58 aa0.53□□□□□ -2.32
SCFD1-221ENST00000556534 CFAP126Q5VTH2 177 aa0.53□□□□□ -2.32
SCFD1-221ENST00000556534 SVBPQ8N300 66 aa0.53□□□□□ -2.32
SCFD1-221ENST00000556534 CGREF1Q99674 301 aa0.53□□□□□ -2.32
SCFD1-221ENST00000556534 NPVFQ9HCQ7 196 aa0.53□□□□□ -2.32
SCFD1-221ENST00000556534 LINC00846Q9NV44 126 aa0.53□□□□□ -2.32
SCFD1-221ENST00000556534 FAIMQ9NVQ4 179 aa0.53□□□□□ -2.32
SCFD1-221ENST00000556534 V9GYH0 126 aa0.53□□□□□ -2.32
SCFD1-221ENST00000556534 DNAH8Q96JB1 4490 aa0.53□□□□□ -2.33
SCFD1-221ENST00000556534 C20orf202A1L168 122 aa0.52□□□□□ -2.33
SCFD1-221ENST00000556534 FAM24AA6NFZ4 105 aa0.52□□□□□ -2.33
SCFD1-221ENST00000556534 DCDP81605 110 aaKnown RBP0.52□□□□□ -2.33
SCFD1-221ENST00000556534 C14orf144Q96I85 54 aa0.52□□□□□ -2.33
SCFD1-221ENST00000556534 DYNLRB1Q9NP97 96 aa0.52□□□□□ -2.33
SCFD1-221ENST00000556534 CTXND1A0A1B0GTU2 59 aa0.51□□□□□ -2.33
SCFD1-221ENST00000556534 HMGN4O00479 90 aa0.51□□□□□ -2.33
SCFD1-221ENST00000556534 ATP5EP56381 51 aaPredicted RBP0.51□□□□□ -2.33
SCFD1-221ENST00000556534 MT1HP80294 61 aa0.51□□□□□ -2.33
SCFD1-221ENST00000556534 COX6A2Q02221 97 aa0.51□□□□□ -2.33
SCFD1-221ENST00000556534 NCMAPQ5T1S8 102 aa0.51□□□□□ -2.33
SCFD1-221ENST00000556534 MYOZ3Q8TDC0 251 aa0.51□□□□□ -2.33
SCFD1-221ENST00000556534 LYNX1G3V0Z9 82 aa0.5□□□□□ -2.33
SCFD1-221ENST00000556534 HSD52Q0P140 79 aa0.5□□□□□ -2.33
SCFD1-221ENST00000556534 SPINK6Q6UWN8 80 aa0.5□□□□□ -2.33
SCFD1-221ENST00000556534 UBE2DNLQ8IWF7 75 aa0.5□□□□□ -2.33
SCFD1-221ENST00000556534 FAM213BQ8TBF2 198 aa0.5□□□□□ -2.33
SCFD1-221ENST00000556534 C12orf57Q99622 126 aa0.5□□□□□ -2.33
SCFD1-221ENST00000556534 FLGP20930 4061 aaPredicted RBP0.49□□□□□ -2.33
SCFD1-221ENST00000556534 IGLC7A0M8Q6 106 aa0.49□□□□□ -2.33
SCFD1-221ENST00000556534 SPINK8P0C7L1 97 aa0.49□□□□□ -2.33
SCFD1-221ENST00000556534 SPRR2EP22531 72 aa0.49□□□□□ -2.33
SCFD1-221ENST00000556534 SPRR2BP35325 72 aa0.49□□□□□ -2.33
SCFD1-221ENST00000556534 SPRR2AP35326 72 aa0.49□□□□□ -2.33
SCFD1-221ENST00000556534 DEFB112Q30KQ8 113 aa0.49□□□□□ -2.33
SCFD1-221ENST00000556534 KRTAP21-1Q3LI58 79 aa0.49□□□□□ -2.33
SCFD1-221ENST00000556534 GTF2H5Q6ZYL4 71 aa0.49□□□□□ -2.33
SCFD1-221ENST00000556534 SSBP3-AS1Q7Z2R9 100 aa0.49□□□□□ -2.33
SCFD1-221ENST00000556534 DEFB108BQ8NET1 73 aa0.49□□□□□ -2.33
SCFD1-221ENST00000556534 LINC00472Q9H8W2 130 aa0.49□□□□□ -2.33
SCFD1-221ENST00000556534 ZNF815PA8K554 130 aa0.48□□□□□ -2.33
SCFD1-221ENST00000556534 ATP6V1G2-DDX39BF2Z307 99 aa0.48□□□□□ -2.33
SCFD1-221ENST00000556534 F8VRH5 84 aa0.48□□□□□ -2.33
SCFD1-221ENST00000556534 UQCRHP07919 91 aa0.48□□□□□ -2.33
SCFD1-221ENST00000556534 KRTAP19-2Q3LHN2 52 aa0.48□□□□□ -2.33
SCFD1-221ENST00000556534 APLNQ9ULZ1 77 aa0.48□□□□□ -2.33
SCFD1-221ENST00000556534 ANKRD36A6QL64 1941 aa0.47□□□□□ -2.33
SCFD1-221ENST00000556534 PHGR1C9JFL3 82 aa0.47□□□□□ -2.33
SCFD1-221ENST00000556534 CHKB-CPT1BH3BT56 60 aa0.47□□□□□ -2.33
SCFD1-221ENST00000556534 SPRR2DP22532 72 aa0.47□□□□□ -2.33
SCFD1-221ENST00000556534 GNG11P61952 73 aa0.47□□□□□ -2.33
SCFD1-221ENST00000556534 HAMPP81172 84 aa0.47□□□□□ -2.33
SCFD1-221ENST00000556534 BAGE2Q86Y30 109 aa0.47□□□□□ -2.33
SCFD1-221ENST00000556534 SMIM4Q8WVI0 70 aa0.47□□□□□ -2.33
SCFD1-221ENST00000556534 CDC42SE2Q9NRR3 84 aa0.47□□□□□ -2.33
SCFD1-221ENST00000556534 LINC01558Q9Y6Z2 57 aa0.47□□□□□ -2.33
SCFD1-221ENST00000556534 TRAV22A0A0B4J277 110 aa0.46□□□□□ -2.34
SCFD1-221ENST00000556534 FAM167A-AS1Q96KT0 104 aa0.46□□□□□ -2.34
SCFD1-221ENST00000556534 LINC01600Q96MT4 127 aa0.46□□□□□ -2.34
SCFD1-221ENST00000556534 TCEAL7Q9BRU2 100 aa0.46□□□□□ -2.34
SCFD1-221ENST00000556534 LOC285095A0A1B0GVY8 99 aa0.45□□□□□ -2.34
SCFD1-221ENST00000556534 TMEM262E9PQX1 116 aa0.45□□□□□ -2.34
SCFD1-221ENST00000556534 UQCR11O14957 56 aa0.45□□□□□ -2.34
SCFD1-221ENST00000556534 SNCAP37840 140 aa0.45□□□□□ -2.34
SCFD1-221ENST00000556534 Q0VG73 95 aa0.45□□□□□ -2.34
SCFD1-221ENST00000556534 COX14Q96I36 57 aa0.45□□□□□ -2.34
SCFD1-221ENST00000556534 H3BQ15 152 aa0.44□□□□□ -2.34
SCFD1-221ENST00000556534 MT4P47944 62 aa0.44□□□□□ -2.34
SCFD1-221ENST00000556534 UBE2D3P61077 147 aa0.44□□□□□ -2.34
SCFD1-221ENST00000556534 UBE2D2P62837 147 aa0.44□□□□□ -2.34
SCFD1-221ENST00000556534 TMEM170BQ5T4T1 132 aa0.44□□□□□ -2.34
SCFD1-221ENST00000556534 M0R2T5 61 aa0.43□□□□□ -2.34
SCFD1-221ENST00000556534 SFT2D2O95562 160 aa0.43□□□□□ -2.34
SCFD1-221ENST00000556534 APOC3P02656 99 aa0.43□□□□□ -2.34
SCFD1-221ENST00000556534 RBP2P50120 134 aa0.43□□□□□ -2.34
SCFD1-221ENST00000556534 COX17Q14061 63 aa0.43□□□□□ -2.34
SCFD1-221ENST00000556534 DEFB110Q30KQ9 67 aa0.43□□□□□ -2.34
SCFD1-221ENST00000556534 SPRR2FQ96RM1 72 aa0.43□□□□□ -2.34
SCFD1-221ENST00000556534 MANBALQ9NQG1 85 aa0.43□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms