RNA–Protein interactions for RNA: ENST00000556399.5

ARHGEF40-207, Transcript of Rho guanine nucleotide exchange factor 40, humanhuman

TSL 1 (best)

Gene ARHGEF40, Length 4,902 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF40-207ENST00000556399 Q1T7F1 81 aa9.56□□□□□ -0.88
ARHGEF40-207ENST00000556399 SPANXA2-OT1Q8N9U9 137 aa9.56□□□□□ -0.88
ARHGEF40-207ENST00000556399 WWC2-AS2Q96NR7 200 aa9.56□□□□□ -0.88
ARHGEF40-207ENST00000556399 ITPR1Q14643 2758 aa9.55□□□□□ -0.88
ARHGEF40-207ENST00000556399 RTL8CO15255 209 aa9.55□□□□□ -0.88
ARHGEF40-207ENST00000556399 K7EIL1 84 aa9.53□□□□□ -0.88
ARHGEF40-207ENST00000556399 MGAM2Q2M2H8 2515 aa9.53□□□□□ -0.88
ARHGEF40-207ENST00000556399 CNBPP62633 177 aaKnown RBP9.52□□□□□ -0.89
ARHGEF40-207ENST00000556399 A0A1B0GVX0 72 aa9.52□□□□□ -0.89
ARHGEF40-207ENST00000556399 C9orf163Q8N9P6 203 aa9.52□□□□□ -0.89
ARHGEF40-207ENST00000556399 HELZ2Q9BYK8 2649 aaKnown RBP9.52□□□□□ -0.89
ARHGEF40-207ENST00000556399 HRNRQ86YZ3 2850 aaPredicted RBP9.51□□□□□ -0.89
ARHGEF40-207ENST00000556399 LINC00313P59037 77 aa9.51□□□□□ -0.89
ARHGEF40-207ENST00000556399 C7orf65Q6ZTY9 151 aa9.51□□□□□ -0.89
ARHGEF40-207ENST00000556399 SPRR1AP35321 89 aa9.5□□□□□ -0.89
ARHGEF40-207ENST00000556399 SETXQ7Z333 2677 aaKnown RBP9.5□□□□□ -0.89
ARHGEF40-207ENST00000556399 KRTAP26-1Q6PEX3 210 aa9.49□□□□□ -0.89
ARHGEF40-207ENST00000556399 SPACA4Q8TDM5 124 aa9.49□□□□□ -0.89
ARHGEF40-207ENST00000556399 MAST4O15021 2626 aa9.49□□□□□ -0.89
ARHGEF40-207ENST00000556399 ATP11AUNQ6ZP68 121 aa9.48□□□□□ -0.89
ARHGEF40-207ENST00000556399 KTN1-AS1Q86SY8 53 aa9.47□□□□□ -0.89
ARHGEF40-207ENST00000556399 ANAPC11Q9NYG5 84 aa9.45□□□□□ -0.9
ARHGEF40-207ENST00000556399 LCA10Q71F78 164 aa9.44□□□□□ -0.9
ARHGEF40-207ENST00000556399 ZFHX4Q86UP3 3567 aa9.44□□□□□ -0.9
ARHGEF40-207ENST00000556399 DCHS1Q96JQ0 3298 aa9.43□□□□□ -0.9
ARHGEF40-207ENST00000556399 ZNF861PO60384 105 aa9.42□□□□□ -0.9
ARHGEF40-207ENST00000556399 ASH1LQ9NR48 2969 aaKnown RBP9.41□□□□□ -0.9
ARHGEF40-207ENST00000556399 PLA2G1BP04054 148 aaKnown RBP9.4□□□□□ -0.91
ARHGEF40-207ENST00000556399 ZANQ9Y493 2812 aa9.39□□□□□ -0.91
ARHGEF40-207ENST00000556399 SPINT4Q6UDR6 99 aa9.38□□□□□ -0.91
ARHGEF40-207ENST00000556399 IGLV8-61A0A075B6I0 122 aa9.38□□□□□ -0.91
ARHGEF40-207ENST00000556399 UTP20O75691 2785 aaKnown RBP9.38□□□□□ -0.91
ARHGEF40-207ENST00000556399 ASPMQ8IZT6 3477 aa9.38□□□□□ -0.91
ARHGEF40-207ENST00000556399 TNP2Q05952 138 aa9.38□□□□□ -0.91
ARHGEF40-207ENST00000556399 APLNQ9ULZ1 77 aa9.37□□□□□ -0.91
ARHGEF40-207ENST00000556399 PSORS1C2Q9UIG4 136 aa9.37□□□□□ -0.91
ARHGEF40-207ENST00000556399 TYMSOSQ8TAI1 123 aa9.37□□□□□ -0.91
ARHGEF40-207ENST00000556399 IGLV7-46A0A075B6I9 117 aa9.36□□□□□ -0.91
ARHGEF40-207ENST00000556399 DMDP11532 3685 aa9.36□□□□□ -0.91
ARHGEF40-207ENST00000556399 A0A087WTM6 91 aa9.36□□□□□ -0.91
ARHGEF40-207ENST00000556399 CDC42SE1Q9NRR8 79 aa9.36□□□□□ -0.91
ARHGEF40-207ENST00000556399 UBR5O95071 2799 aaPredicted RBP9.36□□□□□ -0.91
ARHGEF40-207ENST00000556399 Q8N9P0 234 aaPredicted RBP9.35□□□□□ -0.91
ARHGEF40-207ENST00000556399 MMP24-AS1A0A0U1RRL7 71 aa9.34□□□□□ -0.91
ARHGEF40-207ENST00000556399 J3QL48 77 aa9.33□□□□□ -0.92
ARHGEF40-207ENST00000556399 UQCR11O14957 56 aa9.32□□□□□ -0.92
ARHGEF40-207ENST00000556399 SSBP3-AS1Q7Z2R9 100 aa9.32□□□□□ -0.92
ARHGEF40-207ENST00000556399 KRTAP4-16G5E9R7 235 aaPredicted RBP9.32□□□□□ -0.92
ARHGEF40-207ENST00000556399 Q96NJ1 140 aa9.31□□□□□ -0.92
ARHGEF40-207ENST00000556399 LINC00472Q9H8W2 130 aa9.3□□□□□ -0.92
ARHGEF40-207ENST00000556399 PRR26Q8N8Z3 221 aa9.3□□□□□ -0.92
ARHGEF40-207ENST00000556399 NOTCH1P46531 2555 aa9.3□□□□□ -0.92
ARHGEF40-207ENST00000556399 Q75L30 129 aa9.29□□□□□ -0.92
ARHGEF40-207ENST00000556399 Q5VV11 94 aa9.29□□□□□ -0.92
ARHGEF40-207ENST00000556399 TEP1Q99973 2627 aaKnown RBP9.29□□□□□ -0.92
ARHGEF40-207ENST00000556399 SPRR1BP22528 89 aa9.27□□□□□ -0.93
ARHGEF40-207ENST00000556399 MIR22HGQ0VDD5 57 aa9.27□□□□□ -0.93
ARHGEF40-207ENST00000556399 IGLV7-43P04211 117 aa9.27□□□□□ -0.93
ARHGEF40-207ENST00000556399 LAMA5O15230 3695 aa9.27□□□□□ -0.93
ARHGEF40-207ENST00000556399 RELNP78509 3460 aa9.27□□□□□ -0.93
ARHGEF40-207ENST00000556399 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.26□□□□□ -0.93
ARHGEF40-207ENST00000556399 SMG1Q96Q15 3661 aaKnown RBP9.24□□□□□ -0.93
ARHGEF40-207ENST00000556399 ZCCHC13Q8WW36 166 aaKnown RBP9.24□□□□□ -0.93
ARHGEF40-207ENST00000556399 KRTAP1-5Q9BYS1 174 aa9.22□□□□□ -0.93
ARHGEF40-207ENST00000556399 LINC01558Q9Y6Z2 57 aa9.22□□□□□ -0.93
ARHGEF40-207ENST00000556399 MUC3AQ02505 3323 aa9.2□□□□□ -0.94
ARHGEF40-207ENST00000556399 CSMD1Q96PZ7 3565 aa9.2□□□□□ -0.94
ARHGEF40-207ENST00000556399 FBN2P35556 2912 aa9.19□□□□□ -0.94
ARHGEF40-207ENST00000556399 DCHS2Q6V1P9 2916 aa9.18□□□□□ -0.94
ARHGEF40-207ENST00000556399 HRES1P13985 223 aa9.18□□□□□ -0.94
ARHGEF40-207ENST00000556399 KRTAP29-1A8MX34 341 aaPredicted RBP9.17□□□□□ -0.94
ARHGEF40-207ENST00000556399 BAHCC1Q9P281 2608 aa9.17□□□□□ -0.94
ARHGEF40-207ENST00000556399 RBM12B-AS1Q9P1G2 102 aa9.17□□□□□ -0.94
ARHGEF40-207ENST00000556399 H3BS24 57 aa9.15□□□□□ -0.94
ARHGEF40-207ENST00000556399 NF1P21359 2839 aa9.15□□□□□ -0.95
ARHGEF40-207ENST00000556399 COL6A5A8TX70 2615 aa9.15□□□□□ -0.95
ARHGEF40-207ENST00000556399 APCP25054 2843 aa9.14□□□□□ -0.95
ARHGEF40-207ENST00000556399 STAB1Q9NY15 2570 aa9.14□□□□□ -0.95
ARHGEF40-207ENST00000556399 NBEAL1Q6ZS30 2694 aa9.13□□□□□ -0.95
ARHGEF40-207ENST00000556399 LCE6AA0A183 80 aa9.13□□□□□ -0.95
ARHGEF40-207ENST00000556399 CRYBG3Q68DQ2 2970 aa9.13□□□□□ -0.95
ARHGEF40-207ENST00000556399 CELSR2Q9HCU4 2923 aa9.12□□□□□ -0.95
ARHGEF40-207ENST00000556399 KRTAP7-1Q8IUC3 87 aa9.12□□□□□ -0.95
ARHGEF40-207ENST00000556399 COX6B2Q6YFQ2 88 aa9.11□□□□□ -0.95
ARHGEF40-207ENST00000556399 ITPR2Q14571 2701 aa9.1□□□□□ -0.95
ARHGEF40-207ENST00000556399 LINC00304Q8N9R0 145 aa9.1□□□□□ -0.95
ARHGEF40-207ENST00000556399 SPINK7P58062 85 aa9.1□□□□□ -0.95
ARHGEF40-207ENST00000556399 MXRA5Q9NR99 2828 aa9.08□□□□□ -0.96
ARHGEF40-207ENST00000556399 Q8N1X5 172 aa9.08□□□□□ -0.96
ARHGEF40-207ENST00000556399 CRIPTQ9P021 101 aa9.07□□□□□ -0.96
ARHGEF40-207ENST00000556399 PLAC8Q9NZF1 115 aa9.05□□□□□ -0.96
ARHGEF40-207ENST00000556399 HIVEP1P15822 2718 aa9.05□□□□□ -0.96
ARHGEF40-207ENST00000556399 LINC01554Q52M75 96 aa9.04□□□□□ -0.96
ARHGEF40-207ENST00000556399 C9orf92A6NGG3 77 aa9.03□□□□□ -0.96
ARHGEF40-207ENST00000556399 PANO1I0J062 215 aa9.02□□□□□ -0.96
ARHGEF40-207ENST00000556399 Q6ZR54 194 aa9.02□□□□□ -0.96
ARHGEF40-207ENST00000556399 NIPBLQ6KC79 2804 aaeCLIP9.02□□□□□ -0.97
ARHGEF40-207ENST00000556399 NSD1Q96L73 2696 aaPredicted RBP9.02□□□□□ -0.97
ARHGEF40-207ENST00000556399 Q5W150 140 aa9.01□□□□□ -0.97
ARHGEF40-207ENST00000556399 KRTAP11-1Q8IUC1 163 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 152.7 ms