RNA–Protein interactions for RNA: ENST00000553280.1

SCFD1-209, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 574 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-209ENST00000553280 NBASA2RRP1 2371 aa-0.56□□□□□ -2.5
SCFD1-209ENST00000553280 DEPDC5O75140 1603 aa-0.56□□□□□ -2.5
SCFD1-209ENST00000553280 LAMA5O15230 3695 aa-0.57□□□□□ -2.5
SCFD1-209ENST00000553280 NF1P21359 2839 aa-0.58□□□□□ -2.5
SCFD1-209ENST00000553280 SCN11AQ9UI33 1791 aa-0.58□□□□□ -2.5
SCFD1-209ENST00000553280 PLCH1Q4KWH8 1693 aa-0.59□□□□□ -2.5
SCFD1-209ENST00000553280 H0YAA0 97 aa-0.59□□□□□ -2.5
SCFD1-209ENST00000553280 KRTAP20-2Q3LI61 65 aa-0.59□□□□□ -2.5
SCFD1-209ENST00000553280 FLGP20930 4061 aaPredicted RBP-0.59□□□□□ -2.5
SCFD1-209ENST00000553280 HERC2O95714 4834 aa-0.6□□□□□ -2.51
SCFD1-209ENST00000553280 SPTBN4Q9H254 2564 aa-0.6□□□□□ -2.51
SCFD1-209ENST00000553280 SVEP1Q4LDE5 3571 aa-0.6□□□□□ -2.51
SCFD1-209ENST00000553280 RRBP1Q9P2E9 1410 aaKnown RBP-0.6□□□□□ -2.51
SCFD1-209ENST00000553280 HMGA1P17096 107 aaKnown RBP-0.6□□□□□ -2.51
SCFD1-209ENST00000553280 PCLOQ9Y6V0 5065 aa-0.61□□□□□ -2.51
SCFD1-209ENST00000553280 SPRR2EP22531 72 aa-0.61□□□□□ -2.51
SCFD1-209ENST00000553280 CD163L1Q9NR16 1453 aa-0.61□□□□□ -2.51
SCFD1-209ENST00000553280 C18orf32Q8TCD1 76 aa-0.62□□□□□ -2.51
SCFD1-209ENST00000553280 DDX60LQ5H9U9 1706 aaKnown RBP-0.62□□□□□ -2.51
SCFD1-209ENST00000553280 TNRC18O15417 2968 aaPredicted RBP-0.62□□□□□ -2.51
SCFD1-209ENST00000553280 ANKRD50Q9ULJ7 1429 aa-0.63□□□□□ -2.51
SCFD1-209ENST00000553280 RICTORQ6R327 1708 aa-0.63□□□□□ -2.51
SCFD1-209ENST00000553280 MAP3K1Q13233 1512 aa-0.64□□□□□ -2.51
SCFD1-209ENST00000553280 TGP01266 2768 aa-0.64□□□□□ -2.51
SCFD1-209ENST00000553280 PKD1P98161 4303 aa-0.64□□□□□ -2.51
SCFD1-209ENST00000553280 DEFA5Q01523 94 aa-0.64□□□□□ -2.51
SCFD1-209ENST00000553280 PRRC2CQ9Y520 2896 aaKnown RBP-0.65□□□□□ -2.51
SCFD1-209ENST00000553280 LYNX1G3V0Z9 82 aa-0.65□□□□□ -2.51
SCFD1-209ENST00000553280 MT4P47944 62 aa-0.65□□□□□ -2.51
SCFD1-209ENST00000553280 EIF2AK4Q9P2K8 1649 aaKnown RBP-0.65□□□□□ -2.51
SCFD1-209ENST00000553280 ANKARQ7Z5J8 1434 aa-0.65□□□□□ -2.51
SCFD1-209ENST00000553280 USH2AO75445 5202 aa-0.65□□□□□ -2.51
SCFD1-209ENST00000553280 SONP18583 2426 aaKnown RBP-0.66□□□□□ -2.51
SCFD1-209ENST00000553280 ABCA8O94911 1581 aa-0.66□□□□□ -2.52
SCFD1-209ENST00000553280 THOC2Q8NI27 1593 aaKnown RBP-0.66□□□□□ -2.52
SCFD1-209ENST00000553280 STARD9Q9P2P6 4700 aa-0.67□□□□□ -2.52
SCFD1-209ENST00000553280 MXRA5Q9NR99 2828 aa-0.67□□□□□ -2.52
SCFD1-209ENST00000553280 SCRIBQ14160 1630 aa-0.67□□□□□ -2.52
SCFD1-209ENST00000553280 DEFB131BA0A096LNP1 70 aa-0.68□□□□□ -2.52
SCFD1-209ENST00000553280 HFM1A2PYH4 1435 aa-0.69□□□□□ -2.52
SCFD1-209ENST00000553280 UBR4Q5T4S7 5183 aa-0.69□□□□□ -2.52
SCFD1-209ENST00000553280 RALGAPBQ86X10 1494 aa-0.7□□□□□ -2.52
SCFD1-209ENST00000553280 DNAH6Q9C0G6 4158 aa-0.71□□□□□ -2.52
SCFD1-209ENST00000553280 DSPP15924 2871 aaKnown RBP-0.71□□□□□ -2.52
SCFD1-209ENST00000553280 NEBP20929 6669 aa-0.72□□□□□ -2.52
SCFD1-209ENST00000553280 ITSN1Q15811 1721 aa-0.72□□□□□ -2.52
SCFD1-209ENST00000553280 LMTK2Q8IWU2 1503 aa-0.72□□□□□ -2.52
SCFD1-209ENST00000553280 HYDINQ4G0P3 5121 aa-0.72□□□□□ -2.52
SCFD1-209ENST00000553280 EPG5Q9HCE0 2579 aa-0.72□□□□□ -2.53
SCFD1-209ENST00000553280 EPPK1P58107 5090 aaKnown RBP-0.72□□□□□ -2.53
SCFD1-209ENST00000553280 HIVEP1P15822 2718 aa-0.73□□□□□ -2.53
SCFD1-209ENST00000553280 RNF17Q9BXT8 1623 aaKnown RBP-0.73□□□□□ -2.53
SCFD1-209ENST00000553280 NBPF19A0A087WUL8 3843 aa-0.73□□□□□ -2.53
SCFD1-209ENST00000553280 MRPL33O75394 65 aaKnown RBP-0.73□□□□□ -2.53
SCFD1-209ENST00000553280 DEFB130BP0DP73 79 aa-0.73□□□□□ -2.53
SCFD1-209ENST00000553280 DEFB130AP0DP74 79 aa-0.73□□□□□ -2.53
SCFD1-209ENST00000553280 IAPPP10997 89 aa-0.73□□□□□ -2.53
SCFD1-209ENST00000553280 KCNQ1DNQ9H478 68 aa-0.73□□□□□ -2.53
SCFD1-209ENST00000553280 SPG11Q96JI7 2443 aa-0.74□□□□□ -2.53
SCFD1-209ENST00000553280 MUC17Q685J3 4493 aa-0.74□□□□□ -2.53
SCFD1-209ENST00000553280 H3BNG1 76 aa-0.75□□□□□ -2.53
SCFD1-209ENST00000553280 UBL5Q9BZL1 73 aa-0.75□□□□□ -2.53
SCFD1-209ENST00000553280 DOPEY1Q5JWR5 2465 aa-0.75□□□□□ -2.53
SCFD1-209ENST00000553280 USP9YO00507 2555 aaPredicted RBP-0.75□□□□□ -2.53
SCFD1-209ENST00000553280 FAT3Q8TDW7 4589 aa-0.76□□□□□ -2.53
SCFD1-209ENST00000553280 C9orf92A6NGG3 77 aa-0.76□□□□□ -2.53
SCFD1-209ENST00000553280 VPS13DQ5THJ4 4388 aa-0.76□□□□□ -2.53
SCFD1-209ENST00000553280 ZC3H13Q5T200 1668 aaKnown RBP-0.77□□□□□ -2.53
SCFD1-209ENST00000553280 TJP1Q07157 1748 aa-0.78□□□□□ -2.53
SCFD1-209ENST00000553280 PRLHP81277 87 aa-0.78□□□□□ -2.53
SCFD1-209ENST00000553280 DNAH9Q9NYC9 4486 aa-0.78□□□□□ -2.53
SCFD1-209ENST00000553280 ITPR3Q14573 2671 aa-0.78□□□□□ -2.53
SCFD1-209ENST00000553280 RYR1P21817 5038 aa-0.78□□□□□ -2.53
SCFD1-209ENST00000553280 LYSTQ99698 3801 aa-0.79□□□□□ -2.54
SCFD1-209ENST00000553280 PKHD1L1Q86WI1 4243 aa-0.79□□□□□ -2.54
SCFD1-209ENST00000553280 TACC2O95359 2948 aa-0.79□□□□□ -2.54
SCFD1-209ENST00000553280 RYR3Q15413 4870 aa-0.79□□□□□ -2.54
SCFD1-209ENST00000553280 BIRC6Q9NR09 4857 aa-0.79□□□□□ -2.54
SCFD1-209ENST00000553280 MT1AP04731 61 aa-0.8□□□□□ -2.54
SCFD1-209ENST00000553280 SPRR2FQ96RM1 72 aa-0.8□□□□□ -2.54
SCFD1-209ENST00000553280 H3BVH4 76 aa-0.81□□□□□ -2.54
SCFD1-209ENST00000553280 ENHOQ6UWT2 76 aa-0.81□□□□□ -2.54
SCFD1-209ENST00000553280 DNAH3Q8TD57 4116 aa-0.81□□□□□ -2.54
SCFD1-209ENST00000553280 FASNP49327 2511 aaKnown RBP-0.81□□□□□ -2.54
SCFD1-209ENST00000553280 INO80Q9ULG1 1556 aaPredicted RBP-0.82□□□□□ -2.54
SCFD1-209ENST00000553280 ZZEF1O43149 2961 aa-0.82□□□□□ -2.54
SCFD1-209ENST00000553280 KIAA0586Q9BVV6 1533 aa-0.82□□□□□ -2.54
SCFD1-209ENST00000553280 PARP4Q9UKK3 1724 aaKnown RBP-0.82□□□□□ -2.54
SCFD1-209ENST00000553280 MYO18BQ8IUG5 2567 aa-0.83□□□□□ -2.54
SCFD1-209ENST00000553280 HTTP42858 3142 aa-0.83□□□□□ -2.54
SCFD1-209ENST00000553280 MYO5CQ9NQX4 1742 aa-0.84□□□□□ -2.54
SCFD1-209ENST00000553280 AKAP9Q99996 3911 aa-0.84□□□□□ -2.54
SCFD1-209ENST00000553280 TEP1Q99973 2627 aaKnown RBP-0.85□□□□□ -2.54
SCFD1-209ENST00000553280 KIAA1109Q2LD37 5005 aa-0.85□□□□□ -2.55
SCFD1-209ENST00000553280 CRIP1P50238 77 aa-0.85□□□□□ -2.55
SCFD1-209ENST00000553280 CUBNO60494 3623 aa-0.85□□□□□ -2.55
SCFD1-209ENST00000553280 NHSQ6T4R5 1651 aa-0.85□□□□□ -2.55
SCFD1-209ENST00000553280 ANKHD1Q8IWZ3 2542 aaKnown RBP-0.86□□□□□ -2.55
SCFD1-209ENST00000553280 DNAH2Q9P225 4427 aa-0.86□□□□□ -2.55
SCFD1-209ENST00000553280 NRAPQ86VF7 1730 aa-0.86□□□□□ -2.55
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms