RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 SSPOA2VEC9 5147 aa4.12□□□□□ -1.75
NEK3-201ENST00000550331 A0A0A0MQY5 61 aa4.11□□□□□ -1.75
NEK3-201ENST00000550331 TRBV7-6A0A0J9YX20 115 aa4.11□□□□□ -1.75
NEK3-201ENST00000550331 TEX49A0A1B0GTD5 131 aa4.11□□□□□ -1.75
NEK3-201ENST00000550331 KRTAP23-1A1A580 65 aa4.11□□□□□ -1.75
NEK3-201ENST00000550331 TAL2Q16559 108 aa4.11□□□□□ -1.75
NEK3-201ENST00000550331 LINC00518Q8N0U6 118 aa4.11□□□□□ -1.75
NEK3-201ENST00000550331 USH2AO75445 5202 aa4.1□□□□□ -1.75
NEK3-201ENST00000550331 ZNF815PA8K554 130 aa4.1□□□□□ -1.75
NEK3-201ENST00000550331 COLCA2A8K830 154 aa4.1□□□□□ -1.75
NEK3-201ENST00000550331 H7C2G1 150 aa4.1□□□□□ -1.75
NEK3-201ENST00000550331 Q1RN00 199 aa4.1□□□□□ -1.75
NEK3-201ENST00000550331 LINC01545Q5VT33 79 aa4.1□□□□□ -1.75
NEK3-201ENST00000550331 IGLV5-48A0A075B6I7 105 aa4.09□□□□□ -1.75
NEK3-201ENST00000550331 A0A1B0GWB2 263 aa4.09□□□□□ -1.75
NEK3-201ENST00000550331 AKR1D1P51857 326 aa4.09□□□□□ -1.75
NEK3-201ENST00000550331 SMIM29Q86T20 159 aa4.09□□□□□ -1.75
NEK3-201ENST00000550331 DEFB105AQ8NG35 78 aa4.09□□□□□ -1.75
NEK3-201ENST00000550331 RPL37P61927 97 aaKnown RBP4.08□□□□□ -1.76
NEK3-201ENST00000550331 C1orf195Q5TG92 126 aa4.08□□□□□ -1.76
NEK3-201ENST00000550331 COPS9Q8WXC6 57 aa4.08□□□□□ -1.76
NEK3-201ENST00000550331 FLGP20930 4061 aaPredicted RBP4.08□□□□□ -1.76
NEK3-201ENST00000550331 M0R2T5 61 aa4.07□□□□□ -1.76
NEK3-201ENST00000550331 Q8N9P0 234 aaPredicted RBP4.07□□□□□ -1.76
NEK3-201ENST00000550331 TTTY13Q9BZ97 58 aa4.07□□□□□ -1.76
NEK3-201ENST00000550331 HIST1H2BKO60814 126 aa4.06□□□□□ -1.76
NEK3-201ENST00000550331 HIST1H2BJP06899 126 aa4.06□□□□□ -1.76
NEK3-201ENST00000550331 IFITM1P13164 125 aa4.06□□□□□ -1.76
NEK3-201ENST00000550331 HIST1H2BOP23527 126 aa4.06□□□□□ -1.76
NEK3-201ENST00000550331 HIST1H2BBP33778 126 aa4.06□□□□□ -1.76
NEK3-201ENST00000550331 HIST1H2BDP58876 126 aa4.06□□□□□ -1.76
NEK3-201ENST00000550331 HIST1H2BCP62807 126 aa4.06□□□□□ -1.76
NEK3-201ENST00000550331 HIST2H2BEQ16778 126 aa4.06□□□□□ -1.76
NEK3-201ENST00000550331 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.06□□□□□ -1.76
NEK3-201ENST00000550331 SCGB1D4Q6XE38 83 aa4.06□□□□□ -1.76
NEK3-201ENST00000550331 HIST1H2BHQ93079 126 aa4.06□□□□□ -1.76
NEK3-201ENST00000550331 HIST1H2BNQ99877 126 aa4.06□□□□□ -1.76
NEK3-201ENST00000550331 HIST1H2BMQ99879 126 aa4.06□□□□□ -1.76
NEK3-201ENST00000550331 NHP2Q9NX24 153 aaKnown RBP4.06□□□□□ -1.76
NEK3-201ENST00000550331 A6NDN8 102 aa4.05□□□□□ -1.76
NEK3-201ENST00000550331 C3orf79P0CE67 100 aa4.05□□□□□ -1.76
NEK3-201ENST00000550331 SNRPEP62304 92 aaKnown RBP4.05□□□□□ -1.76
NEK3-201ENST00000550331 Q6ZVH6 145 aa4.05□□□□□ -1.76
NEK3-201ENST00000550331 A0A0G2JQZ4 141 aa4.04□□□□□ -1.76
NEK3-201ENST00000550331 TCL1BO95988 128 aa4.04□□□□□ -1.76
NEK3-201ENST00000550331 FCGBPQ9Y6R7 5405 aaPredicted RBP4.04□□□□□ -1.76
NEK3-201ENST00000550331 TRAV13-2A0A0B4J235 113 aa4.03□□□□□ -1.76
NEK3-201ENST00000550331 COX6B2Q6YFQ2 88 aa4.03□□□□□ -1.76
NEK3-201ENST00000550331 SLC7A5P1Q8MH63 180 aa4.03□□□□□ -1.76
NEK3-201ENST00000550331 C20orf202A1L168 122 aa4.02□□□□□ -1.77
NEK3-201ENST00000550331 F8WEM9 126 aa4.02□□□□□ -1.77
NEK3-201ENST00000550331 KRTDAPP60985 99 aa4.02□□□□□ -1.77
NEK3-201ENST00000550331 COA6Q5JTJ3 125 aaKnown RBP4.02□□□□□ -1.77
NEK3-201ENST00000550331 MUSTN1Q8IVN3 82 aa4.02□□□□□ -1.77
NEK3-201ENST00000550331 SMIM11BQ8TCY0 68 aa4.02□□□□□ -1.77
NEK3-201ENST00000550331 VAMP3Q15836 100 aa4□□□□□ -1.77
NEK3-201ENST00000550331 Q6JHZ5 121 aa4□□□□□ -1.77
NEK3-201ENST00000550331 PCP2Q8IVA1 136 aa4□□□□□ -1.77
NEK3-201ENST00000550331 CLEC2BQ92478 149 aa4□□□□□ -1.77
NEK3-201ENST00000550331 TRBV7-7A0A0K0K1E9 115 aa3.99□□□□□ -1.77
NEK3-201ENST00000550331 UBE2V1Q13404 147 aa3.99□□□□□ -1.77
NEK3-201ENST00000550331 LINC00575Q6W349 94 aa3.99□□□□□ -1.77
NEK3-201ENST00000550331 Q6ZQY7 126 aa3.98□□□□□ -1.77
NEK3-201ENST00000550331 Q75L30 129 aa3.98□□□□□ -1.77
NEK3-201ENST00000550331 ATOH7Q8N100 152 aa3.98□□□□□ -1.77
NEK3-201ENST00000550331 hADV29S1A0JD25 119 aa3.97□□□□□ -1.77
NEK3-201ENST00000550331 IGFL1Q6UW32 110 aa3.97□□□□□ -1.77
NEK3-201ENST00000550331 ATP11AUNQ6ZP68 121 aa3.97□□□□□ -1.77
NEK3-201ENST00000550331 OCIAD2Q56VL3 154 aa3.96□□□□□ -1.78
NEK3-201ENST00000550331 PPDPFLQ8WWR9 84 aa3.96□□□□□ -1.78
NEK3-201ENST00000550331 OBSCN-AS1Q96MR7 158 aa3.96□□□□□ -1.78
NEK3-201ENST00000550331 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP3.95□□□□□ -1.78
NEK3-201ENST00000550331 Q6Q795 121 aa3.94□□□□□ -1.78
NEK3-201ENST00000550331 LST1O00453 97 aa3.93□□□□□ -1.78
NEK3-201ENST00000550331 BVES-AS1Q5T3Y7 98 aa3.93□□□□□ -1.78
NEK3-201ENST00000550331 MACF1Q9UPN3 7388 aaKnown RBP3.92□□□□□ -1.78
NEK3-201ENST00000550331 SYNE2Q8WXH0 6885 aaKnown RBP3.92□□□□□ -1.78
NEK3-201ENST00000550331 HSBP1L1C9JCN9 74 aa3.92□□□□□ -1.78
NEK3-201ENST00000550331 CFC1P0CG37 223 aa3.92□□□□□ -1.78
NEK3-201ENST00000550331 C20orf166-AS1Q96NR2 134 aa3.92□□□□□ -1.78
NEK3-201ENST00000550331 SNHG12Q9BXW3 62 aa3.92□□□□□ -1.78
NEK3-201ENST00000550331 SS18L2Q9UHA2 77 aa3.92□□□□□ -1.78
NEK3-201ENST00000550331 PCP4L1A6NKN8 68 aa3.91□□□□□ -1.78
NEK3-201ENST00000550331 Q96NJ1 140 aa3.91□□□□□ -1.78
NEK3-201ENST00000550331 A8MUU9 505 aa3.9□□□□□ -1.79
NEK3-201ENST00000550331 H3BUT2 72 aa3.9□□□□□ -1.79
NEK3-201ENST00000550331 PAM16Q9Y3D7 125 aa3.9□□□□□ -1.79
NEK3-201ENST00000550331 TRBV20-1A0A075B6N2 111 aa3.89□□□□□ -1.79
NEK3-201ENST00000550331 SNCGO76070 127 aa3.89□□□□□ -1.79
NEK3-201ENST00000550331 TEN1Q86WV5 123 aa3.89□□□□□ -1.79
NEK3-201ENST00000550331 HIST3H2BBQ8N257 126 aa3.89□□□□□ -1.79
NEK3-201ENST00000550331 C12orf57Q99622 126 aa3.89□□□□□ -1.79
NEK3-201ENST00000550331 HIST1H2BLQ99880 126 aa3.89□□□□□ -1.79
NEK3-201ENST00000550331 S100A2P29034 98 aa3.88□□□□□ -1.79
NEK3-201ENST00000550331 HIST1H4GQ99525 98 aa3.88□□□□□ -1.79
NEK3-201ENST00000550331 A0A087WSZ3 146 aa3.87□□□□□ -1.79
NEK3-201ENST00000550331 NDUFV3P56181 108 aaKnown RBP3.87□□□□□ -1.79
NEK3-201ENST00000550331 H0YGX0 51 aa3.86□□□□□ -1.79
NEK3-201ENST00000550331 DLEU1O43261 78 aa3.85□□□□□ -1.79
NEK3-201ENST00000550331 COX8AP10176 69 aa3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms