RNA–Protein interactions for RNA: ENST00000550136.1

PTCH1-220, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 2,388 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-220ENST00000550136 C9orf163Q8N9P6 203 aa6.08□□□□□ -1.44
PTCH1-220ENST00000550136 IGKV3-20P01619 116 aa6.08□□□□□ -1.44
PTCH1-220ENST00000550136 Q8IZM0 81 aa6.08□□□□□ -1.44
PTCH1-220ENST00000550136 WWC2-AS2Q96NR7 200 aa6.08□□□□□ -1.44
PTCH1-220ENST00000550136 RYR2Q92736 4967 aa6.08□□□□□ -1.44
PTCH1-220ENST00000550136 TRGV4A0A0C4DH28 118 aa6.07□□□□□ -1.44
PTCH1-220ENST00000550136 G3V318 75 aa6.07□□□□□ -1.44
PTCH1-220ENST00000550136 IGLV6-57P01721 117 aa6.07□□□□□ -1.44
PTCH1-220ENST00000550136 IGHV3-11P01762 117 aa6.07□□□□□ -1.44
PTCH1-220ENST00000550136 KRTAP10-3P60369 221 aa6.07□□□□□ -1.44
PTCH1-220ENST00000550136 LINC00959A0A1B0GUT2 108 aa6.07□□□□□ -1.44
PTCH1-220ENST00000550136 DEFB112Q30KQ8 113 aa6.07□□□□□ -1.44
PTCH1-220ENST00000550136 Q6ZR54 194 aa6.07□□□□□ -1.44
PTCH1-220ENST00000550136 WNK2Q9Y3S1 2297 aa6.06□□□□□ -1.44
PTCH1-220ENST00000550136 ROMO1P60602 79 aa6.06□□□□□ -1.44
PTCH1-220ENST00000550136 H0Y9P7 68 aa6.06□□□□□ -1.44
PTCH1-220ENST00000550136 DSCR10P59022 87 aa6.06□□□□□ -1.44
PTCH1-220ENST00000550136 Q8NDZ9 215 aa6.06□□□□□ -1.44
PTCH1-220ENST00000550136 DYNC2H1Q8NCM8 4307 aaKnown RBP6.05□□□□□ -1.44
PTCH1-220ENST00000550136 IGLV7-46A0A075B6I9 117 aa6.05□□□□□ -1.44
PTCH1-220ENST00000550136 K7EQZ3 153 aa6.04□□□□□ -1.44
PTCH1-220ENST00000550136 REG3AQ06141 175 aa6.04□□□□□ -1.44
PTCH1-220ENST00000550136 NOTCH2NLQ7Z3S9 236 aa6.04□□□□□ -1.44
PTCH1-220ENST00000550136 KRTAP9-9Q9BYP9 154 aa6.04□□□□□ -1.44
PTCH1-220ENST00000550136 KRTAP9-4Q9BYQ2 154 aa6.04□□□□□ -1.44
PTCH1-220ENST00000550136 HTN1P15515 57 aa6.03□□□□□ -1.44
PTCH1-220ENST00000550136 IGKV3OR2-268A0A0C4DH90 116 aa6.02□□□□□ -1.45
PTCH1-220ENST00000550136 COL7A1Q02388 2944 aa6.01□□□□□ -1.45
PTCH1-220ENST00000550136 IGKV2D-24A0A075B6R9 120 aa6.01□□□□□ -1.45
PTCH1-220ENST00000550136 CHCHD10Q8WYQ3 142 aaPredicted RBP6.01□□□□□ -1.45
PTCH1-220ENST00000550136 MAP6D1Q9H9H5 199 aa6.01□□□□□ -1.45
PTCH1-220ENST00000550136 MINOS1-NBL1R4GNA1 71 aa6.01□□□□□ -1.45
PTCH1-220ENST00000550136 IGHV4-28A0A0C4DH34 117 aa6□□□□□ -1.45
PTCH1-220ENST00000550136 IGLV5-48A0A075B6I7 105 aa5.99□□□□□ -1.45
PTCH1-220ENST00000550136 Q6YL49 198 aa5.99□□□□□ -1.45
PTCH1-220ENST00000550136 DNAH3Q8TD57 4116 aa5.99□□□□□ -1.45
PTCH1-220ENST00000550136 DNAH9Q9NYC9 4486 aa5.98□□□□□ -1.45
PTCH1-220ENST00000550136 IGLV1-50A0A075B6I6 118 aa5.98□□□□□ -1.45
PTCH1-220ENST00000550136 KRTAP4-8A0A0G2JLE6 195 aa5.97□□□□□ -1.45
PTCH1-220ENST00000550136 K7EIL1 84 aa5.96□□□□□ -1.45
PTCH1-220ENST00000550136 USMG5Q96IX5 58 aa5.96□□□□□ -1.45
PTCH1-220ENST00000550136 DNAH1Q9P2D7 4330 aa5.96□□□□□ -1.45
PTCH1-220ENST00000550136 SACSQ9NZJ4 4579 aa5.96□□□□□ -1.46
PTCH1-220ENST00000550136 SPATA8Q6RVD6 105 aa5.95□□□□□ -1.46
PTCH1-220ENST00000550136 TENM2Q9NT68 2774 aa5.95□□□□□ -1.46
PTCH1-220ENST00000550136 REG3GQ6UW15 175 aa5.94□□□□□ -1.46
PTCH1-220ENST00000550136 NOTCH3Q9UM47 2321 aa5.94□□□□□ -1.46
PTCH1-220ENST00000550136 HYDINQ4G0P3 5121 aa5.94□□□□□ -1.46
PTCH1-220ENST00000550136 MIR22HGQ0VDD5 57 aa5.94□□□□□ -1.46
PTCH1-220ENST00000550136 C5orf56Q8N8D9 126 aa5.94□□□□□ -1.46
PTCH1-220ENST00000550136 H3BUA1 57 aa5.93□□□□□ -1.46
PTCH1-220ENST00000550136 BRD3OSQ6XYD6 125 aa5.93□□□□□ -1.46
PTCH1-220ENST00000550136 WFDC13Q8IUB5 93 aa5.93□□□□□ -1.46
PTCH1-220ENST00000550136 Q8NBF4 154 aa5.93□□□□□ -1.46
PTCH1-220ENST00000550136 SPRR4Q96PI1 79 aa5.93□□□□□ -1.46
PTCH1-220ENST00000550136 KRTAP29-1A8MX34 341 aaPredicted RBP5.93□□□□□ -1.46
PTCH1-220ENST00000550136 DEFB116Q30KQ4 102 aa5.93□□□□□ -1.46
PTCH1-220ENST00000550136 IGLV5-37A0A075B6J1 123 aa5.92□□□□□ -1.46
PTCH1-220ENST00000550136 HERC2O95714 4834 aa5.92□□□□□ -1.46
PTCH1-220ENST00000550136 INSP01308 110 aa5.91□□□□□ -1.46
PTCH1-220ENST00000550136 CASC10Q5T4H9 136 aa5.91□□□□□ -1.46
PTCH1-220ENST00000550136 HRES1P13985 223 aa5.9□□□□□ -1.46
PTCH1-220ENST00000550136 WFDC10BQ8IUB3 73 aa5.9□□□□□ -1.46
PTCH1-220ENST00000550136 XAGE1AQ9HD64 81 aa5.89□□□□□ -1.47
PTCH1-220ENST00000550136 P0C880 135 aa5.89□□□□□ -1.47
PTCH1-220ENST00000550136 TRGV1A0A0A0MS02 117 aa5.88□□□□□ -1.47
PTCH1-220ENST00000550136 C1orf137Q5JT78 98 aa5.88□□□□□ -1.47
PTCH1-220ENST00000550136 Q8N377 158 aa5.88□□□□□ -1.47
PTCH1-220ENST00000550136 PCLOQ9Y6V0 5065 aa5.88□□□□□ -1.47
PTCH1-220ENST00000550136 KRTAP10-11P60412 298 aa5.87□□□□□ -1.47
PTCH1-220ENST00000550136 EGFEM1PQ0D2K5 195 aa5.86□□□□□ -1.47
PTCH1-220ENST00000550136 KRTAP25-1Q3LHN0 102 aa5.86□□□□□ -1.47
PTCH1-220ENST00000550136 STAB2Q8WWQ8 2551 aa5.86□□□□□ -1.47
PTCH1-220ENST00000550136 A0A0J9YWU9 116 aa5.86□□□□□ -1.47
PTCH1-220ENST00000550136 ZNF861PO60384 105 aa5.86□□□□□ -1.47
PTCH1-220ENST00000550136 C7orf33Q8WU49 177 aa5.86□□□□□ -1.47
PTCH1-220ENST00000550136 DEFB131BA0A096LNP1 70 aa5.84□□□□□ -1.48
PTCH1-220ENST00000550136 A0A1B0GUV1 79 aa5.84□□□□□ -1.48
PTCH1-220ENST00000550136 PCOTHQ58A44 107 aa5.84□□□□□ -1.48
PTCH1-220ENST00000550136 KRTAP16-1A8MUX0 517 aa5.83□□□□□ -1.48
PTCH1-220ENST00000550136 DEFB105AQ8NG35 78 aa5.83□□□□□ -1.48
PTCH1-220ENST00000550136 DEFB131AP59861 70 aa5.82□□□□□ -1.48
PTCH1-220ENST00000550136 UNQ6190/PRO20217Q6UXQ8 127 aa5.82□□□□□ -1.48
PTCH1-220ENST00000550136 PRR34Q9NV39 138 aa5.82□□□□□ -1.48
PTCH1-220ENST00000550136 LCE1DQ5T752 114 aa5.81□□□□□ -1.48
PTCH1-220ENST00000550136 DNAH7Q8WXX0 4024 aa5.81□□□□□ -1.48
PTCH1-220ENST00000550136 GVQW2A0A096LPI5 108 aaPredicted RBP5.81□□□□□ -1.48
PTCH1-220ENST00000550136 A6NDX4 124 aa5.81□□□□□ -1.48
PTCH1-220ENST00000550136 LYSTQ99698 3801 aa5.81□□□□□ -1.48
PTCH1-220ENST00000550136 RYR1P21817 5038 aa5.8□□□□□ -1.48
PTCH1-220ENST00000550136 UQCR11O14957 56 aa5.8□□□□□ -1.48
PTCH1-220ENST00000550136 GYPEP15421 78 aa5.8□□□□□ -1.48
PTCH1-220ENST00000550136 LINC00483Q53H64 154 aa5.79□□□□□ -1.48
PTCH1-220ENST00000550136 CLPSL2Q6UWE3 100 aa5.79□□□□□ -1.48
PTCH1-220ENST00000550136 A0A1B0GU69 56 aa5.78□□□□□ -1.48
PTCH1-220ENST00000550136 A8MWP4 228 aa5.78□□□□□ -1.48
PTCH1-220ENST00000550136 H3BUX3 64 aa5.78□□□□□ -1.48
PTCH1-220ENST00000550136 KRTAP4-7Q9BYR0 210 aa5.77□□□□□ -1.49
PTCH1-220ENST00000550136 IGLV10-54A0A075B6I4 117 aa5.77□□□□□ -1.49
PTCH1-220ENST00000550136 LY6EQ16553 131 aa5.75□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms