RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 TRBV7-4A0A0J9YYF1 115 aa9.67□□□□□ -0.86
CUX1-214ENST00000550008 APLNQ9ULZ1 77 aa9.66□□□□□ -0.86
CUX1-214ENST00000550008 IGFL1Q6UW32 110 aa9.65□□□□□ -0.87
CUX1-214ENST00000550008 C9orf163Q8N9P6 203 aa9.65□□□□□ -0.87
CUX1-214ENST00000550008 SPENQ96T58 3664 aaKnown RBP9.64□□□□□ -0.87
CUX1-214ENST00000550008 TLX1NBP0CAT3 122 aa9.63□□□□□ -0.87
CUX1-214ENST00000550008 SPACA4Q8TDM5 124 aa9.63□□□□□ -0.87
CUX1-214ENST00000550008 TENM1Q9UKZ4 2725 aa9.63□□□□□ -0.87
CUX1-214ENST00000550008 C1orf64Q8NEQ6 169 aa9.61□□□□□ -0.87
CUX1-214ENST00000550008 A0A087WTM6 91 aa9.61□□□□□ -0.87
CUX1-214ENST00000550008 A0A1W2PNM2 257 aa9.61□□□□□ -0.87
CUX1-214ENST00000550008 H7BZZ5 65 aa9.59□□□□□ -0.87
CUX1-214ENST00000550008 hDV103S1A0JD37 113 aa9.59□□□□□ -0.87
CUX1-214ENST00000550008 CSMD2Q7Z408 3487 aa9.58□□□□□ -0.88
CUX1-214ENST00000550008 LIMD2Q9BT23 127 aa9.58□□□□□ -0.88
CUX1-214ENST00000550008 FBN1P35555 2871 aaKnown RBP9.58□□□□□ -0.88
CUX1-214ENST00000550008 KLKP1Q107X0 134 aa9.57□□□□□ -0.88
CUX1-214ENST00000550008 VWFP04275 2813 aa9.57□□□□□ -0.88
CUX1-214ENST00000550008 OBSCN-AS1Q96MR7 158 aa9.56□□□□□ -0.88
CUX1-214ENST00000550008 WWC2-AS2Q96NR7 200 aa9.56□□□□□ -0.88
CUX1-214ENST00000550008 OTOGQ6ZRI0 2925 aa9.55□□□□□ -0.88
CUX1-214ENST00000550008 KRTAP1-5Q9BYS1 174 aa9.55□□□□□ -0.88
CUX1-214ENST00000550008 TENM3Q9P273 2699 aa9.55□□□□□ -0.88
CUX1-214ENST00000550008 LINC01600Q96MT4 127 aa9.54□□□□□ -0.88
CUX1-214ENST00000550008 PLA2G2DQ9UNK4 145 aa9.54□□□□□ -0.88
CUX1-214ENST00000550008 A0A1B0GW54 56 aa9.53□□□□□ -0.88
CUX1-214ENST00000550008 A8MUN3 132 aa9.52□□□□□ -0.88
CUX1-214ENST00000550008 CNBPP62633 177 aaKnown RBP9.52□□□□□ -0.88
CUX1-214ENST00000550008 PSORS1C2Q9UIG4 136 aa9.52□□□□□ -0.89
CUX1-214ENST00000550008 IGKV2D-30A0A075B6S6 120 aa9.51□□□□□ -0.89
CUX1-214ENST00000550008 IGKV2-30P06310 120 aa9.51□□□□□ -0.89
CUX1-214ENST00000550008 KRTAP26-1Q6PEX3 210 aa9.5□□□□□ -0.89
CUX1-214ENST00000550008 NBPF19A0A087WUL8 3843 aa9.5□□□□□ -0.89
CUX1-214ENST00000550008 SPINK1P00995 79 aa9.5□□□□□ -0.89
CUX1-214ENST00000550008 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.49□□□□□ -0.89
CUX1-214ENST00000550008 ZFHX3Q15911 3703 aa9.48□□□□□ -0.89
CUX1-214ENST00000550008 ZNF861PO60384 105 aa9.47□□□□□ -0.89
CUX1-214ENST00000550008 IGLV5-48A0A075B6I7 105 aa9.46□□□□□ -0.89
CUX1-214ENST00000550008 TRAV22A0A0B4J277 110 aa9.46□□□□□ -0.89
CUX1-214ENST00000550008 A8MWP4 228 aa9.46□□□□□ -0.89
CUX1-214ENST00000550008 SMR3BP02814 79 aaPredicted RBP9.46□□□□□ -0.9
CUX1-214ENST00000550008 TNP2Q05952 138 aa9.46□□□□□ -0.9
CUX1-214ENST00000550008 CD164Q04900 197 aa9.45□□□□□ -0.9
CUX1-214ENST00000550008 CYSTM1Q9H1C7 97 aa9.44□□□□□ -0.9
CUX1-214ENST00000550008 SPAG11AQ6PDA7 123 aa9.44□□□□□ -0.9
CUX1-214ENST00000550008 IGLV5-37A0A075B6J1 123 aa9.43□□□□□ -0.9
CUX1-214ENST00000550008 TYMSOSQ8TAI1 123 aa9.43□□□□□ -0.9
CUX1-214ENST00000550008 PLA2G1BP04054 148 aaKnown RBP9.43□□□□□ -0.9
CUX1-214ENST00000550008 PRR15Q8IV56 129 aa9.43□□□□□ -0.9
CUX1-214ENST00000550008 Q5XG85 94 aa9.42□□□□□ -0.9
CUX1-214ENST00000550008 PDZD2O15018 2839 aa9.42□□□□□ -0.9
CUX1-214ENST00000550008 K7ERS5 55 aa9.41□□□□□ -0.9
CUX1-214ENST00000550008 SPRR4Q96PI1 79 aa9.4□□□□□ -0.9
CUX1-214ENST00000550008 PKD1L1Q8TDX9 2849 aa9.38□□□□□ -0.91
CUX1-214ENST00000550008 LINC00313P59037 77 aa9.37□□□□□ -0.91
CUX1-214ENST00000550008 TP53AIP1Q9HCN2 124 aa9.37□□□□□ -0.91
CUX1-214ENST00000550008 BSNQ9UPA5 3926 aa9.36□□□□□ -0.91
CUX1-214ENST00000550008 IGLV7-43P04211 117 aa9.36□□□□□ -0.91
CUX1-214ENST00000550008 DSCR10P59022 87 aa9.36□□□□□ -0.91
CUX1-214ENST00000550008 C8orf17Q9NRJ1 99 aa9.35□□□□□ -0.91
CUX1-214ENST00000550008 SPRR1AP35321 89 aa9.34□□□□□ -0.91
CUX1-214ENST00000550008 MRPL34Q9BQ48 92 aaKnown RBP9.34□□□□□ -0.91
CUX1-214ENST00000550008 Q96NJ1 140 aa9.31□□□□□ -0.92
CUX1-214ENST00000550008 OXTP01178 125 aa9.3□□□□□ -0.92
CUX1-214ENST00000550008 KTN1-AS1Q86SY8 53 aa9.3□□□□□ -0.92
CUX1-214ENST00000550008 A0A1B0GVX0 72 aa9.3□□□□□ -0.92
CUX1-214ENST00000550008 PANO1I0J062 215 aa9.3□□□□□ -0.92
CUX1-214ENST00000550008 CYP4F30PQ9H0H9 118 aa9.29□□□□□ -0.92
CUX1-214ENST00000550008 FP248Q71RG6 208 aaPredicted RBP9.29□□□□□ -0.92
CUX1-214ENST00000550008 OCR1Q9BZK8 76 aa9.28□□□□□ -0.92
CUX1-214ENST00000550008 DMBT1Q9UGM3 2413 aaPredicted RBP9.28□□□□□ -0.92
CUX1-214ENST00000550008 ATP11AUNQ6ZP68 121 aa9.27□□□□□ -0.93
CUX1-214ENST00000550008 H3BPC8 53 aa9.26□□□□□ -0.93
CUX1-214ENST00000550008 SSBP3-AS1Q7Z2R9 100 aa9.26□□□□□ -0.93
CUX1-214ENST00000550008 A0A1B0GU69 56 aa9.25□□□□□ -0.93
CUX1-214ENST00000550008 C7orf65Q6ZTY9 151 aa9.25□□□□□ -0.93
CUX1-214ENST00000550008 C8orf87E5RJ46 101 aa9.24□□□□□ -0.93
CUX1-214ENST00000550008 COA5Q86WW8 74 aa9.24□□□□□ -0.93
CUX1-214ENST00000550008 LOC101927531A0A1B0GV80 90 aa9.23□□□□□ -0.93
CUX1-214ENST00000550008 FAM229AH3BQW9 127 aa9.21□□□□□ -0.93
CUX1-214ENST00000550008 C9orf92A6NGG3 77 aa9.21□□□□□ -0.94
CUX1-214ENST00000550008 IGLV8-61A0A075B6I0 122 aa9.2□□□□□ -0.94
CUX1-214ENST00000550008 ACYP2P14621 99 aa9.19□□□□□ -0.94
CUX1-214ENST00000550008 FAM229BQ4G0N7 80 aa9.19□□□□□ -0.94
CUX1-214ENST00000550008 TENM2Q9NT68 2774 aa9.18□□□□□ -0.94
CUX1-214ENST00000550008 KRTAP4-16G5E9R7 235 aaPredicted RBP9.18□□□□□ -0.94
CUX1-214ENST00000550008 LINC00304Q8N9R0 145 aa9.17□□□□□ -0.94
CUX1-214ENST00000550008 LCA10Q71F78 164 aa9.17□□□□□ -0.94
CUX1-214ENST00000550008 KRTAP11-1Q8IUC1 163 aa9.16□□□□□ -0.94
CUX1-214ENST00000550008 KRTAP7-1Q8IUC3 87 aa9.16□□□□□ -0.94
CUX1-214ENST00000550008 Q1T7F1 81 aa9.15□□□□□ -0.95
CUX1-214ENST00000550008 KRTAP10-2P60368 255 aa9.14□□□□□ -0.95
CUX1-214ENST00000550008 TGP01266 2768 aa9.14□□□□□ -0.95
CUX1-214ENST00000550008 RBM12B-AS1Q9P1G2 102 aa9.14□□□□□ -0.95
CUX1-214ENST00000550008 PLAC8Q9NZF1 115 aa9.14□□□□□ -0.95
CUX1-214ENST00000550008 PRR26Q8N8Z3 221 aa9.11□□□□□ -0.95
CUX1-214ENST00000550008 FLG2Q5D862 2391 aaPredicted RBP9.09□□□□□ -0.95
CUX1-214ENST00000550008 LINC00472Q9H8W2 130 aa9.08□□□□□ -0.96
CUX1-214ENST00000550008 MMP24-AS1A0A0U1RRL7 71 aa9.07□□□□□ -0.96
CUX1-214ENST00000550008 SPRR1BP22528 89 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 142.7 ms