RNA–Protein interactions for RNA: ENST00000548650.1

CHMP1A-205, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 3

Gene CHMP1A, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-205ENST00000548650 C14orf144Q96I85 54 aa9.35□□□□□ -0.91
CHMP1A-205ENST00000548650 VAMP8Q9BV40 100 aa9.34□□□□□ -0.91
CHMP1A-205ENST00000548650 TMA7Q9Y2S6 64 aaKnown RBP9.34□□□□□ -0.91
CHMP1A-205ENST00000548650 FSIP2Q5CZC0 6907 aa9.33□□□□□ -0.92
CHMP1A-205ENST00000548650 HIST1H4GQ99525 98 aa9.33□□□□□ -0.92
CHMP1A-205ENST00000548650 NHP2Q9NX24 153 aaKnown RBP9.33□□□□□ -0.92
CHMP1A-205ENST00000548650 DLEU1O43261 78 aa9.32□□□□□ -0.92
CHMP1A-205ENST00000548650 RPL37P61927 97 aaKnown RBP9.31□□□□□ -0.92
CHMP1A-205ENST00000548650 C12orf57Q99622 126 aa9.3□□□□□ -0.92
CHMP1A-205ENST00000548650 CFC1BP0CG36 223 aa9.28□□□□□ -0.92
CHMP1A-205ENST00000548650 PYY3Q5JQD4 70 aa9.26□□□□□ -0.93
CHMP1A-205ENST00000548650 C2orf91Q6ZV80 131 aa9.26□□□□□ -0.93
CHMP1A-205ENST00000548650 CRCT1Q9UGL9 99 aa9.26□□□□□ -0.93
CHMP1A-205ENST00000548650 F8WEM9 126 aa9.25□□□□□ -0.93
CHMP1A-205ENST00000548650 TCL1BO95988 128 aa9.25□□□□□ -0.93
CHMP1A-205ENST00000548650 LINC00575Q6W349 94 aa9.25□□□□□ -0.93
CHMP1A-205ENST00000548650 HIGD1BQ9P298 99 aa9.25□□□□□ -0.93
CHMP1A-205ENST00000548650 LORP23490 312 aaPredicted RBP9.24□□□□□ -0.93
CHMP1A-205ENST00000548650 Q6ZQY7 126 aa9.24□□□□□ -0.93
CHMP1A-205ENST00000548650 VAMP3Q15836 100 aa9.23□□□□□ -0.93
CHMP1A-205ENST00000548650 FLGP20930 4061 aaPredicted RBP9.21□□□□□ -0.93
CHMP1A-205ENST00000548650 KRTAP10-6P60371 365 aaPredicted RBP9.21□□□□□ -0.94
CHMP1A-205ENST00000548650 CLEC2BQ92478 149 aa9.21□□□□□ -0.94
CHMP1A-205ENST00000548650 hADV29S1A0JD25 119 aa9.2□□□□□ -0.94
CHMP1A-205ENST00000548650 CFC1P0CG37 223 aa9.2□□□□□ -0.94
CHMP1A-205ENST00000548650 Q6JHZ5 121 aa9.2□□□□□ -0.94
CHMP1A-205ENST00000548650 IGFL1Q6UW32 110 aa9.2□□□□□ -0.94
CHMP1A-205ENST00000548650 TRBV7-7A0A0K0K1E9 115 aa9.19□□□□□ -0.94
CHMP1A-205ENST00000548650 RAB37Q96AX2 223 aa9.19□□□□□ -0.94
CHMP1A-205ENST00000548650 CEND1Q8N111 149 aa9.17□□□□□ -0.94
CHMP1A-205ENST00000548650 A0A0B4J2C4 111 aa9.15□□□□□ -0.94
CHMP1A-205ENST00000548650 OCIAD2Q56VL3 154 aa9.15□□□□□ -0.94
CHMP1A-205ENST00000548650 BVES-AS1Q5T3Y7 98 aa9.15□□□□□ -0.94
CHMP1A-205ENST00000548650 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.15□□□□□ -0.94
CHMP1A-205ENST00000548650 COX6B2Q6YFQ2 88 aa9.15□□□□□ -0.94
CHMP1A-205ENST00000548650 M0R2T5 61 aa9.13□□□□□ -0.95
CHMP1A-205ENST00000548650 FXYD2P54710 66 aa9.13□□□□□ -0.95
CHMP1A-205ENST00000548650 PPDPFLQ8WWR9 84 aa9.12□□□□□ -0.95
CHMP1A-205ENST00000548650 TMEM238LA0A1B0GVL6 79 aa9.11□□□□□ -0.95
CHMP1A-205ENST00000548650 A6NJY4 79 aa9.11□□□□□ -0.95
CHMP1A-205ENST00000548650 OBSCN-AS1Q96MR7 158 aa9.11□□□□□ -0.95
CHMP1A-205ENST00000548650 PRO1854Q9UHT4 67 aa9.1□□□□□ -0.95
CHMP1A-205ENST00000548650 H3BUT2 72 aa9.09□□□□□ -0.95
CHMP1A-205ENST00000548650 HSD52Q0P140 79 aa9.09□□□□□ -0.95
CHMP1A-205ENST00000548650 Q75L30 129 aa9.09□□□□□ -0.95
CHMP1A-205ENST00000548650 UQCR10Q9UDW1 63 aa9.08□□□□□ -0.96
CHMP1A-205ENST00000548650 H0YGX0 51 aa9.06□□□□□ -0.96
CHMP1A-205ENST00000548650 SNHG12Q9BXW3 62 aa9.06□□□□□ -0.96
CHMP1A-205ENST00000548650 FAM218AQ96MZ4 157 aa9.05□□□□□ -0.96
CHMP1A-205ENST00000548650 LST1O00453 97 aa9.04□□□□□ -0.96
CHMP1A-205ENST00000548650 ATP11AUNQ6ZP68 121 aa9.04□□□□□ -0.96
CHMP1A-205ENST00000548650 K7ERJ3 54 aa9.03□□□□□ -0.96
CHMP1A-205ENST00000548650 SNCGO76070 127 aa9.02□□□□□ -0.97
CHMP1A-205ENST00000548650 Q6Q795 121 aa9.02□□□□□ -0.97
CHMP1A-205ENST00000548650 TRIAP1O43715 76 aa9.01□□□□□ -0.97
CHMP1A-205ENST00000548650 SS18L2Q9UHA2 77 aa9.01□□□□□ -0.97
CHMP1A-205ENST00000548650 Q96NJ1 140 aa8.99□□□□□ -0.97
CHMP1A-205ENST00000548650 PSMB2P49721 201 aa8.98□□□□□ -0.97
CHMP1A-205ENST00000548650 TEN1Q86WV5 123 aa8.97□□□□□ -0.97
CHMP1A-205ENST00000548650 C20orf166-AS1Q96NR2 134 aa8.97□□□□□ -0.97
CHMP1A-205ENST00000548650 A0A1B0GX51 115 aa8.96□□□□□ -0.98
CHMP1A-205ENST00000548650 NDUFV3P56181 108 aaKnown RBP8.96□□□□□ -0.98
CHMP1A-205ENST00000548650 A0A087WSZ3 146 aa8.95□□□□□ -0.98
CHMP1A-205ENST00000548650 A8MUU9 505 aa8.95□□□□□ -0.98
CHMP1A-205ENST00000548650 SMIM6P0DI80 62 aa8.93□□□□□ -0.98
CHMP1A-205ENST00000548650 COX6CP09669 75 aa8.92□□□□□ -0.98
CHMP1A-205ENST00000548650 FABP2P12104 132 aa8.92□□□□□ -0.98
CHMP1A-205ENST00000548650 H3BMG7 143 aa8.9□□□□□ -0.98
CHMP1A-205ENST00000548650 DNAL4O96015 105 aa8.9□□□□□ -0.98
CHMP1A-205ENST00000548650 GHRHP01286 108 aa8.9□□□□□ -0.98
CHMP1A-205ENST00000548650 DSCR10P59022 87 aa8.88□□□□□ -0.99
CHMP1A-205ENST00000548650 A0A1W2PNM2 257 aa8.87□□□□□ -0.99
CHMP1A-205ENST00000548650 ORMDL1Q9P0S3 153 aa8.87□□□□□ -0.99
CHMP1A-205ENST00000548650 SCGB1C2P0DMR2 95 aa8.86□□□□□ -0.99
CHMP1A-205ENST00000548650 A0A1B0GV72 72 aa8.85□□□□□ -0.99
CHMP1A-205ENST00000548650 LOC105371267A0A1B0GV96 52 aa8.85□□□□□ -0.99
CHMP1A-205ENST00000548650 M0R143 59 aa8.85□□□□□ -0.99
CHMP1A-205ENST00000548650 SIGMAR1Q99720 223 aa8.85□□□□□ -0.99
CHMP1A-205ENST00000548650 KRTAP9-8Q9BYQ0 159 aa8.84□□□□□ -0.99
CHMP1A-205ENST00000548650 TRBV20-1A0A075B6N2 111 aa8.81□□□□□ -1
CHMP1A-205ENST00000548650 KRTAP16-1A8MUX0 517 aa8.81□□□□□ -1
CHMP1A-205ENST00000548650 TSTD3H0UI37 97 aa8.81□□□□□ -1
CHMP1A-205ENST00000548650 NAA38Q9BRA0 125 aaKnown RBP8.81□□□□□ -1
CHMP1A-205ENST00000548650 H3BQ85 93 aa8.8□□□□□ -1
CHMP1A-205ENST00000548650 TMEM256-PLSCR3K7ERE1 68 aa8.8□□□□□ -1
CHMP1A-205ENST00000548650 TRACP01848 142 aa8.8□□□□□ -1
CHMP1A-205ENST00000548650 USH2AO75445 5202 aa8.8□□□□□ -1
CHMP1A-205ENST00000548650 TRBV7-4A0A0J9YYF1 115 aa8.78□□□□□ -1
CHMP1A-205ENST00000548650 ANKRD29Q8N6D5 301 aa8.78□□□□□ -1
CHMP1A-205ENST00000548650 IGKV4-1P06312 121 aa8.77□□□□□ -1.01
CHMP1A-205ENST00000548650 LINC00313P59037 77 aa8.77□□□□□ -1.01
CHMP1A-205ENST00000548650 UBE2V1Q13404 147 aa8.76□□□□□ -1.01
CHMP1A-205ENST00000548650 SSPOA2VEC9 5147 aa8.76□□□□□ -1.01
CHMP1A-205ENST00000548650 BATFQ16520 125 aa8.75□□□□□ -1.01
CHMP1A-205ENST00000548650 NOTCH2NLQ7Z3S9 236 aa8.75□□□□□ -1.01
CHMP1A-205ENST00000548650 MPLKIPQ8TAP9 179 aa8.73□□□□□ -1.01
CHMP1A-205ENST00000548650 LINC00472Q9H8W2 130 aa8.73□□□□□ -1.01
CHMP1A-205ENST00000548650 BAALC-AS2P0C853 105 aa8.72□□□□□ -1.01
CHMP1A-205ENST00000548650 MT2AP02795 61 aa8.71□□□□□ -1.02
CHMP1A-205ENST00000548650 HRES1P13985 223 aa8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms