RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 HMCN1Q96RW7 5635 aa1.58□□□□□ -2.16
USP28-210ENST00000542033 CACNA1EQ15878 2313 aa1.58□□□□□ -2.16
USP28-210ENST00000542033 WDFY4Q6ZS81 3184 aa1.57□□□□□ -2.16
USP28-210ENST00000542033 KNL1Q8NG31 2342 aa1.57□□□□□ -2.16
USP28-210ENST00000542033 NBEAQ8NFP9 2946 aa1.57□□□□□ -2.16
USP28-210ENST00000542033 TRIOO75962 3097 aa1.57□□□□□ -2.16
USP28-210ENST00000542033 CFAP47Q6ZTR5 3102 aa1.57□□□□□ -2.16
USP28-210ENST00000542033 DEFB130BP0DP73 79 aa1.57□□□□□ -2.16
USP28-210ENST00000542033 DEFB130AP0DP74 79 aa1.57□□□□□ -2.16
USP28-210ENST00000542033 SPRR1AP35321 89 aa1.57□□□□□ -2.16
USP28-210ENST00000542033 MRPL34Q9BQ48 92 aaKnown RBP1.57□□□□□ -2.16
USP28-210ENST00000542033 DOPEY2Q9Y3R5 2298 aa1.57□□□□□ -2.16
USP28-210ENST00000542033 XIRP2A4UGR9 3374 aa1.56□□□□□ -2.16
USP28-210ENST00000542033 WNK2Q9Y3S1 2297 aa1.56□□□□□ -2.16
USP28-210ENST00000542033 LAMA1P25391 3075 aa1.56□□□□□ -2.16
USP28-210ENST00000542033 DCHS1Q96JQ0 3298 aa1.56□□□□□ -2.16
USP28-210ENST00000542033 TRANK1O15050 2925 aa1.56□□□□□ -2.16
USP28-210ENST00000542033 REV3LO60673 3130 aa1.56□□□□□ -2.16
USP28-210ENST00000542033 MUC19Q7Z5P9 8384 aa1.56□□□□□ -2.16
USP28-210ENST00000542033 PRUNE2Q8WUY3 3088 aa1.55□□□□□ -2.16
USP28-210ENST00000542033 LAMA2P24043 3122 aaKnown RBP1.55□□□□□ -2.16
USP28-210ENST00000542033 CRIPTQ9P021 101 aa1.55□□□□□ -2.16
USP28-210ENST00000542033 CHD7Q9P2D1 2997 aa1.55□□□□□ -2.16
USP28-210ENST00000542033 AHCTF1Q8WYP5 2266 aa1.55□□□□□ -2.16
USP28-210ENST00000542033 WDFY3Q8IZQ1 3526 aa1.54□□□□□ -2.16
USP28-210ENST00000542033 H0YAA0 97 aa1.54□□□□□ -2.16
USP28-210ENST00000542033 H3BNG1 76 aa1.54□□□□□ -2.16
USP28-210ENST00000542033 SPART-AS1P0CW21 52 aa1.54□□□□□ -2.16
USP28-210ENST00000542033 A0A096LPF7 62 aa1.53□□□□□ -2.16
USP28-210ENST00000542033 INE1O15225 51 aa1.53□□□□□ -2.16
USP28-210ENST00000542033 SPRR1BP22528 89 aa1.53□□□□□ -2.16
USP28-210ENST00000542033 DEFB136Q30KP8 78 aa1.53□□□□□ -2.16
USP28-210ENST00000542033 Q6ZSA8 131 aa1.53□□□□□ -2.16
USP28-210ENST00000542033 DMXL2Q8TDJ6 3036 aa1.53□□□□□ -2.16
USP28-210ENST00000542033 PLAC4Q8WY50 150 aa1.53□□□□□ -2.16
USP28-210ENST00000542033 CUL9Q8IWT3 2517 aa1.52□□□□□ -2.17
USP28-210ENST00000542033 PLCE1Q9P212 2302 aa1.52□□□□□ -2.17
USP28-210ENST00000542033 ALMS1Q8TCU4 4167 aa1.52□□□□□ -2.17
USP28-210ENST00000542033 TPRXLQ17RH7 258 aa1.52□□□□□ -2.17
USP28-210ENST00000542033 KRTAP5-7Q6L8G8 165 aa1.52□□□□□ -2.17
USP28-210ENST00000542033 HIVEP2P31629 2446 aa1.52□□□□□ -2.17
USP28-210ENST00000542033 PIEZO2Q9H5I5 2752 aa1.52□□□□□ -2.17
USP28-210ENST00000542033 SPTBN1Q01082 2364 aaKnown RBP1.51□□□□□ -2.17
USP28-210ENST00000542033 BRCA2P51587 3418 aa1.51□□□□□ -2.17
USP28-210ENST00000542033 H1FX-AS1Q4G0G2 97 aa1.51□□□□□ -2.17
USP28-210ENST00000542033 C10orf99Q6UWK7 81 aa1.51□□□□□ -2.17
USP28-210ENST00000542033 TACC2O95359 2948 aa1.51□□□□□ -2.17
USP28-210ENST00000542033 SPENQ96T58 3664 aaKnown RBP1.51□□□□□ -2.17
USP28-210ENST00000542033 VCANP13611 3396 aa1.5□□□□□ -2.17
USP28-210ENST00000542033 AKAP13Q12802 2813 aa1.5□□□□□ -2.17
USP28-210ENST00000542033 CACNA1BQ00975 2339 aa1.5□□□□□ -2.17
USP28-210ENST00000542033 DMDP11532 3685 aa1.5□□□□□ -2.17
USP28-210ENST00000542033 FREM2Q5SZK8 3169 aa1.5□□□□□ -2.17
USP28-210ENST00000542033 RPL37P61927 97 aaKnown RBP1.5□□□□□ -2.17
USP28-210ENST00000542033 LINC01556Q5JQF7 62 aa1.5□□□□□ -2.17
USP28-210ENST00000542033 KRTAP13-1Q8IUC0 172 aa1.5□□□□□ -2.17
USP28-210ENST00000542033 DSPP15924 2871 aaKnown RBP1.5□□□□□ -2.17
USP28-210ENST00000542033 CHD9Q3L8U1 2897 aa1.5□□□□□ -2.17
USP28-210ENST00000542033 FAM186AA6NE01 2351 aa1.5□□□□□ -2.17
USP28-210ENST00000542033 HTTP42858 3142 aa1.5□□□□□ -2.17
USP28-210ENST00000542033 CEP250Q9BV73 2442 aa1.49□□□□□ -2.17
USP28-210ENST00000542033 SPTBN2O15020 2390 aa1.49□□□□□ -2.17
USP28-210ENST00000542033 APC2O95996 2303 aa1.49□□□□□ -2.17
USP28-210ENST00000542033 HTN3P15516 51 aa1.49□□□□□ -2.17
USP28-210ENST00000542033 DEFB124Q8NES8 71 aa1.49□□□□□ -2.17
USP28-210ENST00000542033 SPACA4Q8TDM5 124 aa1.49□□□□□ -2.17
USP28-210ENST00000542033 LAMA3Q16787 3333 aa1.48□□□□□ -2.17
USP28-210ENST00000542033 Q6ZRN7 208 aaPredicted RBP1.48□□□□□ -2.17
USP28-210ENST00000542033 CELSR2Q9HCU4 2923 aa1.47□□□□□ -2.17
USP28-210ENST00000542033 CELSR3Q9NYQ7 3312 aa1.47□□□□□ -2.17
USP28-210ENST00000542033 PKDREJQ9NTG1 2253 aa1.47□□□□□ -2.17
USP28-210ENST00000542033 CSMD1Q96PZ7 3565 aa1.47□□□□□ -2.17
USP28-210ENST00000542033 TENM2Q9NT68 2774 aa1.47□□□□□ -2.17
USP28-210ENST00000542033 BOD1L1Q8NFC6 3051 aa1.46□□□□□ -2.18
USP28-210ENST00000542033 PRLHP81277 87 aa1.46□□□□□ -2.18
USP28-210ENST00000542033 DEFB123Q8N688 67 aa1.46□□□□□ -2.18
USP28-210ENST00000542033 SPEGQ15772 3267 aa1.46□□□□□ -2.18
USP28-210ENST00000542033 LRBAP50851 2863 aa1.46□□□□□ -2.18
USP28-210ENST00000542033 WNK1Q9H4A3 2382 aa1.45□□□□□ -2.18
USP28-210ENST00000542033 DMXL1Q9Y485 3027 aa1.45□□□□□ -2.18
USP28-210ENST00000542033 ZFHX4Q86UP3 3567 aa1.45□□□□□ -2.18
USP28-210ENST00000542033 A0A096LNI7 61 aa1.45□□□□□ -2.18
USP28-210ENST00000542033 K7EIL1 84 aa1.45□□□□□ -2.18
USP28-210ENST00000542033 KRTAP12-3P60328 96 aa1.45□□□□□ -2.18
USP28-210ENST00000542033 DEFB135Q30KP9 77 aa1.45□□□□□ -2.18
USP28-210ENST00000542033 UBE2DNLQ8IWF7 75 aa1.45□□□□□ -2.18
USP28-210ENST00000542033 LOC400499M0QZD8 3231 aa1.45□□□□□ -2.18
USP28-210ENST00000542033 CDH23Q9H251 3354 aa1.45□□□□□ -2.18
USP28-210ENST00000542033 COL6A6A6NMZ7 2263 aa1.45□□□□□ -2.18
USP28-210ENST00000542033 PRRC2CQ9Y520 2896 aaKnown RBP1.45□□□□□ -2.18
USP28-210ENST00000542033 CHD6Q8TD26 2715 aa1.44□□□□□ -2.18
USP28-210ENST00000542033 COL12A1Q99715 3063 aa1.44□□□□□ -2.18
USP28-210ENST00000542033 MAP1BP46821 2468 aaKnown RBP1.44□□□□□ -2.18
USP28-210ENST00000542033 ROS1P08922 2347 aa1.44□□□□□ -2.18
USP28-210ENST00000542033 PCNX1Q96RV3 2341 aa1.44□□□□□ -2.18
USP28-210ENST00000542033 EP300Q09472 2414 aaPredicted RBP1.44□□□□□ -2.18
USP28-210ENST00000542033 ATMQ13315 3056 aa1.43□□□□□ -2.18
USP28-210ENST00000542033 SMG1Q96Q15 3661 aaKnown RBP1.43□□□□□ -2.18
USP28-210ENST00000542033 MAP1AP78559 2803 aaPredicted RBP1.43□□□□□ -2.18
USP28-210ENST00000542033 DEFB4AO15263 64 aa1.43□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 105.5 ms