RNA–Protein interactions for RNA: ENST00000542032.1

LEMD3-204, Transcript of LEM domain containing 3, humanhuman

TSL 3

Gene LEMD3, Length 645 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LEMD3-204ENST00000542032 LAMA3Q16787 3333 aa0.97□□□□□ -2.25
LEMD3-204ENST00000542032 SPINK4O60575 86 aa0.97□□□□□ -2.25
LEMD3-204ENST00000542032 LAMA2P24043 3122 aaKnown RBP0.97□□□□□ -2.25
LEMD3-204ENST00000542032 CEP290O15078 2479 aa0.96□□□□□ -2.26
LEMD3-204ENST00000542032 HTTP42858 3142 aa0.96□□□□□ -2.26
LEMD3-204ENST00000542032 MEGF8Q7Z7M0 2845 aa0.96□□□□□ -2.26
LEMD3-204ENST00000542032 ALMS1Q8TCU4 4167 aa0.96□□□□□ -2.26
LEMD3-204ENST00000542032 MKI67P46013 3256 aaKnown RBP0.96□□□□□ -2.26
LEMD3-204ENST00000542032 ZNF462Q96JM2 2506 aa0.95□□□□□ -2.26
LEMD3-204ENST00000542032 DEFB130BP0DP73 79 aa0.95□□□□□ -2.26
LEMD3-204ENST00000542032 DEFB130AP0DP74 79 aa0.95□□□□□ -2.26
LEMD3-204ENST00000542032 IAPPP10997 89 aa0.95□□□□□ -2.26
LEMD3-204ENST00000542032 C6orf48Q9UBA6 75 aa0.95□□□□□ -2.26
LEMD3-204ENST00000542032 NCOR1O75376 2440 aa0.95□□□□□ -2.26
LEMD3-204ENST00000542032 RANBP2P49792 3224 aaKnown RBP0.94□□□□□ -2.26
LEMD3-204ENST00000542032 SPTBN2O15020 2390 aa0.94□□□□□ -2.26
LEMD3-204ENST00000542032 CACNA1HO95180 2353 aa0.94□□□□□ -2.26
LEMD3-204ENST00000542032 CDH23Q9H251 3354 aa0.93□□□□□ -2.26
LEMD3-204ENST00000542032 C5orf42Q9H799 3197 aa0.93□□□□□ -2.26
LEMD3-204ENST00000542032 UNC80Q8N2C7 3258 aa0.93□□□□□ -2.26
LEMD3-204ENST00000542032 CHD7Q9P2D1 2997 aa0.93□□□□□ -2.26
LEMD3-204ENST00000542032 TRIOO75962 3097 aa0.93□□□□□ -2.26
LEMD3-204ENST00000542032 FAM186AA6NE01 2351 aa0.93□□□□□ -2.26
LEMD3-204ENST00000542032 MUC16Q8WXI7 14507 aa0.93□□□□□ -2.26
LEMD3-204ENST00000542032 A0A0C4DFX4 3053 aa0.92□□□□□ -2.26
LEMD3-204ENST00000542032 TRANK1O15050 2925 aa0.92□□□□□ -2.26
LEMD3-204ENST00000542032 ZNF292O60281 2723 aa0.92□□□□□ -2.26
LEMD3-204ENST00000542032 DNAH14Q0VDD8 3507 aa0.92□□□□□ -2.26
LEMD3-204ENST00000542032 XIRP2A4UGR9 3374 aa0.92□□□□□ -2.26
LEMD3-204ENST00000542032 REV3LO60673 3130 aa0.92□□□□□ -2.26
LEMD3-204ENST00000542032 WDR87Q6ZQQ6 2873 aa0.92□□□□□ -2.26
LEMD3-204ENST00000542032 USP34Q70CQ2 3546 aa0.92□□□□□ -2.26
LEMD3-204ENST00000542032 VCANP13611 3396 aa0.91□□□□□ -2.26
LEMD3-204ENST00000542032 MAP1BP46821 2468 aaKnown RBP0.91□□□□□ -2.26
LEMD3-204ENST00000542032 DEFB109BQ30KR1 87 aa0.91□□□□□ -2.26
LEMD3-204ENST00000542032 KRTAP5-10Q6L8G5 202 aa0.91□□□□□ -2.26
LEMD3-204ENST00000542032 CHD9Q3L8U1 2897 aa0.91□□□□□ -2.26
LEMD3-204ENST00000542032 SPEGQ15772 3267 aa0.91□□□□□ -2.26
LEMD3-204ENST00000542032 RPS27P42677 84 aaKnown RBP0.9□□□□□ -2.27
LEMD3-204ENST00000542032 TFF3Q07654 80 aa0.9□□□□□ -2.27
LEMD3-204ENST00000542032 RPS27LQ71UM5 84 aaKnown RBP0.9□□□□□ -2.27
LEMD3-204ENST00000542032 Q9Y3F1 56 aa0.9□□□□□ -2.27
LEMD3-204ENST00000542032 PRUNE2Q8WUY3 3088 aa0.9□□□□□ -2.27
LEMD3-204ENST00000542032 TTC28Q96AY4 2481 aa0.9□□□□□ -2.27
LEMD3-204ENST00000542032 SZT2Q5T011 3432 aa0.89□□□□□ -2.27
LEMD3-204ENST00000542032 LAMA1P25391 3075 aa0.89□□□□□ -2.27
LEMD3-204ENST00000542032 SPTBN1Q01082 2364 aaKnown RBP0.89□□□□□ -2.27
LEMD3-204ENST00000542032 PKDREJQ9NTG1 2253 aa0.89□□□□□ -2.27
LEMD3-204ENST00000542032 DEFB106AQ8N104 65 aa0.89□□□□□ -2.27
LEMD3-204ENST00000542032 WNK2Q9Y3S1 2297 aa0.89□□□□□ -2.27
LEMD3-204ENST00000542032 EYSQ5T1H1 3165 aa0.88□□□□□ -2.27
LEMD3-204ENST00000542032 VPS13AQ96RL7 3174 aa0.88□□□□□ -2.27
LEMD3-204ENST00000542032 PRRC2CQ9Y520 2896 aaKnown RBP0.88□□□□□ -2.27
LEMD3-204ENST00000542032 CELSR2Q9HCU4 2923 aa0.88□□□□□ -2.27
LEMD3-204ENST00000542032 SMIM2Q9BVW6 85 aa0.88□□□□□ -2.27
LEMD3-204ENST00000542032 PCNX1Q96RV3 2341 aa0.88□□□□□ -2.27
LEMD3-204ENST00000542032 F8P00451 2351 aa0.88□□□□□ -2.27
LEMD3-204ENST00000542032 CFAP54Q96N23 3096 aa0.87□□□□□ -2.27
LEMD3-204ENST00000542032 MUC3AQ02505 3323 aa0.87□□□□□ -2.27
LEMD3-204ENST00000542032 CEP250Q9BV73 2442 aa0.87□□□□□ -2.27
LEMD3-204ENST00000542032 FRYLO94915 3013 aa0.87□□□□□ -2.27
LEMD3-204ENST00000542032 FRYQ5TBA9 3013 aa0.87□□□□□ -2.27
LEMD3-204ENST00000542032 MYO15AQ9UKN7 3530 aa0.87□□□□□ -2.27
LEMD3-204ENST00000542032 RIF1Q5UIP0 2472 aaKnown RBP0.87□□□□□ -2.27
LEMD3-204ENST00000542032 CD52P31358 61 aa0.87□□□□□ -2.27
LEMD3-204ENST00000542032 WT1-ASQ06250 92 aa0.87□□□□□ -2.27
LEMD3-204ENST00000542032 BDP1A6H8Y1 2624 aa0.87□□□□□ -2.27
LEMD3-204ENST00000542032 GVINP1Q7Z2Y8 2422 aa0.87□□□□□ -2.27
LEMD3-204ENST00000542032 TPRP12270 2363 aaKnown RBP0.86□□□□□ -2.27
LEMD3-204ENST00000542032 SPTBN5Q9NRC6 3674 aaKnown RBP0.86□□□□□ -2.27
LEMD3-204ENST00000542032 CELSR3Q9NYQ7 3312 aa0.86□□□□□ -2.27
LEMD3-204ENST00000542032 EP300Q09472 2414 aaPredicted RBP0.86□□□□□ -2.27
LEMD3-204ENST00000542032 SPINK6Q6UWN8 80 aa0.86□□□□□ -2.27
LEMD3-204ENST00000542032 FREM2Q5SZK8 3169 aa0.86□□□□□ -2.27
LEMD3-204ENST00000542032 WDFY4Q6ZS81 3184 aa0.86□□□□□ -2.27
LEMD3-204ENST00000542032 POLQO75417 2590 aa0.86□□□□□ -2.27
LEMD3-204ENST00000542032 DSPP15924 2871 aaKnown RBP0.86□□□□□ -2.27
LEMD3-204ENST00000542032 COL6A3P12111 3177 aa0.86□□□□□ -2.27
LEMD3-204ENST00000542032 NBASA2RRP1 2371 aa0.85□□□□□ -2.27
LEMD3-204ENST00000542032 LOC400499M0QZD8 3231 aa0.85□□□□□ -2.27
LEMD3-204ENST00000542032 ACACAQ13085 2346 aa0.85□□□□□ -2.27
LEMD3-204ENST00000542032 WDFY3Q8IZQ1 3526 aa0.85□□□□□ -2.27
LEMD3-204ENST00000542032 NBEAQ8NFP9 2946 aa0.85□□□□□ -2.27
LEMD3-204ENST00000542032 SPTA1P02549 2419 aa0.85□□□□□ -2.27
LEMD3-204ENST00000542032 ANK2Q01484 3957 aa0.84□□□□□ -2.27
LEMD3-204ENST00000542032 SNRPGP62308 76 aaKnown RBP0.84□□□□□ -2.27
LEMD3-204ENST00000542032 COX14Q96I36 57 aa0.84□□□□□ -2.27
LEMD3-204ENST00000542032 SPTAN1Q13813 2472 aaKnown RBP0.84□□□□□ -2.28
LEMD3-204ENST00000542032 TLN1Q9Y490 2541 aaKnown RBP0.84□□□□□ -2.28
LEMD3-204ENST00000542032 TNRC18O15417 2968 aaPredicted RBP0.83□□□□□ -2.28
LEMD3-204ENST00000542032 DMDP11532 3685 aa0.83□□□□□ -2.28
LEMD3-204ENST00000542032 ABCA12Q86UK0 2595 aa0.83□□□□□ -2.28
LEMD3-204ENST00000542032 SPTBN4Q9H254 2564 aa0.83□□□□□ -2.28
LEMD3-204ENST00000542032 FRAS1Q86XX4 4008 aa0.83□□□□□ -2.28
LEMD3-204ENST00000542032 MGAQ8IWI9 3026 aa0.83□□□□□ -2.28
LEMD3-204ENST00000542032 DMXL2Q8TDJ6 3036 aa0.83□□□□□ -2.28
LEMD3-204ENST00000542032 APC2O95996 2303 aa0.82□□□□□ -2.28
LEMD3-204ENST00000542032 AKAP6Q13023 2319 aa0.82□□□□□ -2.28
LEMD3-204ENST00000542032 H3BUA1 57 aa0.82□□□□□ -2.28
LEMD3-204ENST00000542032 LINC01590Q5TEZ4 76 aa0.82□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms