RNA–Protein interactions for RNA: ENST00000541903.6

VPS53-205, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-205ENST00000541903 DNAH8Q96JB1 4490 aa4.48□□□□□ -1.69
VPS53-205ENST00000541903 SMR3BP02814 79 aaPredicted RBP4.47□□□□□ -1.69
VPS53-205ENST00000541903 LINC00483Q53H64 154 aa4.47□□□□□ -1.69
VPS53-205ENST00000541903 SMIM29Q86T20 159 aa4.47□□□□□ -1.69
VPS53-205ENST00000541903 PKD1P98161 4303 aa4.47□□□□□ -1.69
VPS53-205ENST00000541903 TRBV7-4A0A0J9YYF1 115 aa4.46□□□□□ -1.7
VPS53-205ENST00000541903 FAM240AA0A1B0GVK7 77 aa4.46□□□□□ -1.7
VPS53-205ENST00000541903 CDK2AP2O75956 126 aa4.46□□□□□ -1.7
VPS53-205ENST00000541903 CCKP06307 115 aa4.46□□□□□ -1.7
VPS53-205ENST00000541903 ACYP1P07311 99 aa4.46□□□□□ -1.7
VPS53-205ENST00000541903 Q6ZQT0 140 aa4.46□□□□□ -1.7
VPS53-205ENST00000541903 DYNC1H1Q14204 4646 aaKnown RBP4.46□□□□□ -1.7
VPS53-205ENST00000541903 PCLOQ9Y6V0 5065 aa4.46□□□□□ -1.7
VPS53-205ENST00000541903 C9orf153Q5TBE3 101 aa4.45□□□□□ -1.7
VPS53-205ENST00000541903 Q6JHZ5 121 aa4.45□□□□□ -1.7
VPS53-205ENST00000541903 VPS25Q9BRG1 176 aa4.45□□□□□ -1.7
VPS53-205ENST00000541903 IGLV8-61A0A075B6I0 122 aa4.44□□□□□ -1.7
VPS53-205ENST00000541903 IGLV9-49A0A0B4J1Y8 123 aa4.44□□□□□ -1.7
VPS53-205ENST00000541903 PLA2G1BP04054 148 aaKnown RBP4.44□□□□□ -1.7
VPS53-205ENST00000541903 SPINK6Q6UWN8 80 aa4.44□□□□□ -1.7
VPS53-205ENST00000541903 LRP1BQ9NZR2 4599 aa4.44□□□□□ -1.7
VPS53-205ENST00000541903 Q8NBF4 154 aa4.43□□□□□ -1.7
VPS53-205ENST00000541903 FAM229AH3BQW9 127 aa4.42□□□□□ -1.7
VPS53-205ENST00000541903 MOBPQ13875 183 aa4.42□□□□□ -1.7
VPS53-205ENST00000541903 IGFL1Q6UW32 110 aa4.42□□□□□ -1.7
VPS53-205ENST00000541903 ANAPC11Q9NYG5 84 aa4.42□□□□□ -1.7
VPS53-205ENST00000541903 FAM229BQ4G0N7 80 aa4.41□□□□□ -1.7
VPS53-205ENST00000541903 A0A1B0GW54 56 aa4.4□□□□□ -1.71
VPS53-205ENST00000541903 A0A1W2PNM2 257 aa4.4□□□□□ -1.71
VPS53-205ENST00000541903 UBL5Q9BZL1 73 aa4.4□□□□□ -1.71
VPS53-205ENST00000541903 CDIP1Q9H305 208 aa4.4□□□□□ -1.71
VPS53-205ENST00000541903 LINC00846Q9NV44 126 aa4.4□□□□□ -1.71
VPS53-205ENST00000541903 RYR1P21817 5038 aa4.39□□□□□ -1.71
VPS53-205ENST00000541903 A0A0G2JQZ4 141 aa4.39□□□□□ -1.71
VPS53-205ENST00000541903 KRTAP1-4P0C5Y4 121 aa4.39□□□□□ -1.71
VPS53-205ENST00000541903 CRYGAP11844 174 aa4.39□□□□□ -1.71
VPS53-205ENST00000541903 KRTAP10-4P60372 401 aaPredicted RBP4.39□□□□□ -1.71
VPS53-205ENST00000541903 Q5VSD8 79 aa4.39□□□□□ -1.71
VPS53-205ENST00000541903 PKHD1P08F94 4074 aa4.38□□□□□ -1.71
VPS53-205ENST00000541903 Q6Q795 121 aa4.38□□□□□ -1.71
VPS53-205ENST00000541903 SSBP3-AS1Q7Z2R9 100 aa4.38□□□□□ -1.71
VPS53-205ENST00000541903 LINC00643Q86TS7 51 aa4.38□□□□□ -1.71
VPS53-205ENST00000541903 APOBP04114 4563 aaKnown RBP4.38□□□□□ -1.71
VPS53-205ENST00000541903 A0A087X002 238 aa4.37□□□□□ -1.71
VPS53-205ENST00000541903 A0A087WSZ3 146 aa4.36□□□□□ -1.71
VPS53-205ENST00000541903 TRBV7-7A0A0K0K1E9 115 aa4.36□□□□□ -1.71
VPS53-205ENST00000541903 ATP5EP2Q5VTU8 51 aa4.36□□□□□ -1.71
VPS53-205ENST00000541903 Q6ZVQ6 151 aa4.36□□□□□ -1.71
VPS53-205ENST00000541903 NREPQ16612 68 aa4.35□□□□□ -1.71
VPS53-205ENST00000541903 KRTAP13-2Q52LG2 175 aa4.35□□□□□ -1.71
VPS53-205ENST00000541903 HRCT1Q6UXD1 115 aa4.35□□□□□ -1.71
VPS53-205ENST00000541903 Q8N1X5 172 aa4.35□□□□□ -1.71
VPS53-205ENST00000541903 TYMSOSQ8TAI1 123 aa4.35□□□□□ -1.71
VPS53-205ENST00000541903 SIGMAR1Q99720 223 aa4.35□□□□□ -1.71
VPS53-205ENST00000541903 MT-ATP8P03928 68 aa4.34□□□□□ -1.71
VPS53-205ENST00000541903 CD164Q04900 197 aa4.34□□□□□ -1.71
VPS53-205ENST00000541903 SS18L2Q9UHA2 77 aa4.34□□□□□ -1.71
VPS53-205ENST00000541903 PRR26Q8N8Z3 221 aa4.33□□□□□ -1.72
VPS53-205ENST00000541903 IGKV3D-7A0A0C4DH55 119 aa4.32□□□□□ -1.72
VPS53-205ENST00000541903 C4orf48Q5BLP8 95 aa4.32□□□□□ -1.72
VPS53-205ENST00000541903 BPY2O14599 106 aa4.31□□□□□ -1.72
VPS53-205ENST00000541903 CXCL6P80162 114 aa4.31□□□□□ -1.72
VPS53-205ENST00000541903 LINC00304Q8N9R0 145 aa4.31□□□□□ -1.72
VPS53-205ENST00000541903 HERC2O95714 4834 aa4.31□□□□□ -1.72
VPS53-205ENST00000541903 LIMD2Q9BT23 127 aa4.3□□□□□ -1.72
VPS53-205ENST00000541903 HIST1H4AP62805 103 aaKnown RBP4.29□□□□□ -1.72
VPS53-205ENST00000541903 SPAG11AQ6PDA7 123 aa4.29□□□□□ -1.72
VPS53-205ENST00000541903 IMUPQ9GZP8 106 aa4.29□□□□□ -1.72
VPS53-205ENST00000541903 VPS13BQ7Z7G8 4022 aa4.28□□□□□ -1.72
VPS53-205ENST00000541903 FAT1Q14517 4588 aa4.28□□□□□ -1.72
VPS53-205ENST00000541903 J3KT08 172 aa4.28□□□□□ -1.72
VPS53-205ENST00000541903 SPINK1P00995 79 aa4.28□□□□□ -1.72
VPS53-205ENST00000541903 Q5XG85 94 aa4.28□□□□□ -1.72
VPS53-205ENST00000541903 LINC00472Q9H8W2 130 aa4.28□□□□□ -1.72
VPS53-205ENST00000541903 SRRM2Q9UQ35 2752 aaKnown RBP4.27□□□□□ -1.73
VPS53-205ENST00000541903 RPS29P62273 56 aaKnown RBP4.27□□□□□ -1.73
VPS53-205ENST00000541903 DEFB116Q30KQ4 102 aa4.27□□□□□ -1.73
VPS53-205ENST00000541903 KIAA1109Q2LD37 5005 aa4.27□□□□□ -1.73
VPS53-205ENST00000541903 HSPG2P98160 4391 aa4.26□□□□□ -1.73
VPS53-205ENST00000541903 IGKV4-1P06312 121 aa4.26□□□□□ -1.73
VPS53-205ENST00000541903 ASB16-AS1Q495Z4 193 aa4.26□□□□□ -1.73
VPS53-205ENST00000541903 A8MWP4 228 aa4.25□□□□□ -1.73
VPS53-205ENST00000541903 NDUFB1O75438 58 aa4.25□□□□□ -1.73
VPS53-205ENST00000541903 DSCR10P59022 87 aa4.25□□□□□ -1.73
VPS53-205ENST00000541903 Q8N9L7 120 aa4.25□□□□□ -1.73
VPS53-205ENST00000541903 Q96NJ1 140 aa4.25□□□□□ -1.73
VPS53-205ENST00000541903 A0A087WVE0 104 aa4.24□□□□□ -1.73
VPS53-205ENST00000541903 K7EQZ3 153 aa4.24□□□□□ -1.73
VPS53-205ENST00000541903 SCGB1A1P11684 91 aa4.24□□□□□ -1.73
VPS53-205ENST00000541903 UBR4Q5T4S7 5183 aa4.24□□□□□ -1.73
VPS53-205ENST00000541903 FAM236AA0A1B0GUQ0 79 aa4.23□□□□□ -1.73
VPS53-205ENST00000541903 FAM236BA0A1B0GV22 79 aa4.23□□□□□ -1.73
VPS53-205ENST00000541903 KRTAP10-8P60410 259 aa4.23□□□□□ -1.73
VPS53-205ENST00000541903 OXTP01178 125 aa4.22□□□□□ -1.73
VPS53-205ENST00000541903 C1orf195Q5TG92 126 aa4.22□□□□□ -1.73
VPS53-205ENST00000541903 PRR15Q8IV56 129 aa4.22□□□□□ -1.73
VPS53-205ENST00000541903 A0A1B0GVX0 72 aa4.21□□□□□ -1.74
VPS53-205ENST00000541903 KRTAP4-5Q9BYR2 181 aa4.21□□□□□ -1.74
VPS53-205ENST00000541903 PKHD1L1Q86WI1 4243 aa4.2□□□□□ -1.74
VPS53-205ENST00000541903 IGHV6-1A0A0B4J1U7 121 aa4.2□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms