RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 MAP1AP78559 2803 aaPredicted RBP8.68□□□□□ -1.02
USP3-204ENST00000540797 UQCR11O14957 56 aa8.68□□□□□ -1.02
USP3-204ENST00000540797 KRTAP26-1Q6PEX3 210 aa8.67□□□□□ -1.02
USP3-204ENST00000540797 KRTAP10-1P60331 282 aa8.67□□□□□ -1.02
USP3-204ENST00000540797 GCN1Q92616 2671 aaKnown RBP8.66□□□□□ -1.02
USP3-204ENST00000540797 A8MUN3 132 aa8.66□□□□□ -1.02
USP3-204ENST00000540797 KRTAP10-2P60368 255 aa8.66□□□□□ -1.02
USP3-204ENST00000540797 Q5VSD8 79 aa8.66□□□□□ -1.02
USP3-204ENST00000540797 CDH23Q9H251 3354 aa8.65□□□□□ -1.02
USP3-204ENST00000540797 PRO0628Q9UI54 55 aa8.65□□□□□ -1.02
USP3-204ENST00000540797 UBR5O95071 2799 aaPredicted RBP8.64□□□□□ -1.03
USP3-204ENST00000540797 CYP4F30PQ9H0H9 118 aa8.61□□□□□ -1.03
USP3-204ENST00000540797 H7BZZ5 65 aa8.6□□□□□ -1.03
USP3-204ENST00000540797 VPS13AQ96RL7 3174 aa8.6□□□□□ -1.03
USP3-204ENST00000540797 NBEAL1Q6ZS30 2694 aa8.6□□□□□ -1.03
USP3-204ENST00000540797 LINC01554Q52M75 96 aa8.59□□□□□ -1.03
USP3-204ENST00000540797 SPRR1BP22528 89 aa8.59□□□□□ -1.03
USP3-204ENST00000540797 SPANXA2-OT1Q8N9U9 137 aa8.58□□□□□ -1.04
USP3-204ENST00000540797 MIR22HGQ0VDD5 57 aa8.58□□□□□ -1.04
USP3-204ENST00000540797 Q6ZR54 194 aa8.57□□□□□ -1.04
USP3-204ENST00000540797 M0R2T5 61 aa8.56□□□□□ -1.04
USP3-204ENST00000540797 ITPR2Q14571 2701 aa8.55□□□□□ -1.04
USP3-204ENST00000540797 OCR1Q9BZK8 76 aa8.54□□□□□ -1.04
USP3-204ENST00000540797 FLNCQ14315 2725 aa8.53□□□□□ -1.04
USP3-204ENST00000540797 ZCCHC13Q8WW36 166 aaKnown RBP8.53□□□□□ -1.04
USP3-204ENST00000540797 MMP24-AS1A0A0U1RRL7 71 aa8.52□□□□□ -1.05
USP3-204ENST00000540797 NBEAL2Q6ZNJ1 2754 aa8.51□□□□□ -1.05
USP3-204ENST00000540797 A0A0D9SG42 100 aa8.5□□□□□ -1.05
USP3-204ENST00000540797 ITPR1Q14643 2758 aa8.5□□□□□ -1.05
USP3-204ENST00000540797 SZT2Q5T011 3432 aa8.5□□□□□ -1.05
USP3-204ENST00000540797 FRYQ5TBA9 3013 aa8.5□□□□□ -1.05
USP3-204ENST00000540797 PANO1I0J062 215 aa8.49□□□□□ -1.05
USP3-204ENST00000540797 SPINT4Q6UDR6 99 aa8.49□□□□□ -1.05
USP3-204ENST00000540797 HRES1P13985 223 aa8.49□□□□□ -1.05
USP3-204ENST00000540797 CRIPTQ9P021 101 aa8.47□□□□□ -1.05
USP3-204ENST00000540797 LINC00472Q9H8W2 130 aa8.47□□□□□ -1.05
USP3-204ENST00000540797 NSD1Q96L73 2696 aaPredicted RBP8.46□□□□□ -1.06
USP3-204ENST00000540797 SEC61BP60468 96 aaKnown RBP8.46□□□□□ -1.06
USP3-204ENST00000540797 ATMQ13315 3056 aa8.44□□□□□ -1.06
USP3-204ENST00000540797 KRTAP21-3Q3LHN1 58 aa8.44□□□□□ -1.06
USP3-204ENST00000540797 LINC00483Q53H64 154 aa8.42□□□□□ -1.06
USP3-204ENST00000540797 FRYLO94915 3013 aa8.42□□□□□ -1.06
USP3-204ENST00000540797 Q8N9P0 234 aaPredicted RBP8.42□□□□□ -1.06
USP3-204ENST00000540797 TACC2O95359 2948 aa8.4□□□□□ -1.06
USP3-204ENST00000540797 COL12A1Q99715 3063 aa8.39□□□□□ -1.07
USP3-204ENST00000540797 HIVEP1P15822 2718 aa8.39□□□□□ -1.07
USP3-204ENST00000540797 SPINK7P58062 85 aa8.39□□□□□ -1.07
USP3-204ENST00000540797 CSAG1Q6PB30 78 aa8.39□□□□□ -1.07
USP3-204ENST00000540797 Q5W150 140 aa8.38□□□□□ -1.07
USP3-204ENST00000540797 CELSR3Q9NYQ7 3312 aa8.37□□□□□ -1.07
USP3-204ENST00000540797 S4R3F8 94 aa8.36□□□□□ -1.07
USP3-204ENST00000540797 KRTAP4-16G5E9R7 235 aaPredicted RBP8.36□□□□□ -1.07
USP3-204ENST00000540797 Q6ZRN7 208 aaPredicted RBP8.36□□□□□ -1.07
USP3-204ENST00000540797 LAMA1P25391 3075 aa8.35□□□□□ -1.07
USP3-204ENST00000540797 CDC42SE1Q9NRR8 79 aa8.34□□□□□ -1.07
USP3-204ENST00000540797 FP248Q71RG6 208 aaPredicted RBP8.34□□□□□ -1.07
USP3-204ENST00000540797 TNRC18O15417 2968 aaPredicted RBP8.34□□□□□ -1.08
USP3-204ENST00000540797 STAB2Q8WWQ8 2551 aa8.34□□□□□ -1.08
USP3-204ENST00000540797 DMXL2Q8TDJ6 3036 aa8.33□□□□□ -1.08
USP3-204ENST00000540797 CAMK2N1Q7Z7J9 78 aa8.33□□□□□ -1.08
USP3-204ENST00000540797 UTP20O75691 2785 aaKnown RBP8.32□□□□□ -1.08
USP3-204ENST00000540797 A0A087X002 238 aa8.32□□□□□ -1.08
USP3-204ENST00000540797 A0A1B0GU33 70 aa8.32□□□□□ -1.08
USP3-204ENST00000540797 OXTP01178 125 aa8.32□□□□□ -1.08
USP3-204ENST00000540797 COL6A3P12111 3177 aa8.3□□□□□ -1.08
USP3-204ENST00000540797 REV3LO60673 3130 aa8.3□□□□□ -1.08
USP3-204ENST00000540797 VCANP13611 3396 aa8.29□□□□□ -1.08
USP3-204ENST00000540797 KMT2BQ9UMN6 2715 aaPredicted RBP8.28□□□□□ -1.08
USP3-204ENST00000540797 BOD1L1Q8NFC6 3051 aa8.26□□□□□ -1.09
USP3-204ENST00000540797 APCP25054 2843 aa8.24□□□□□ -1.09
USP3-204ENST00000540797 TENM4Q6N022 2769 aa8.24□□□□□ -1.09
USP3-204ENST00000540797 KRTAP11-1Q8IUC1 163 aa8.24□□□□□ -1.09
USP3-204ENST00000540797 KALRNO60229 2985 aa8.23□□□□□ -1.09
USP3-204ENST00000540797 EYSQ5T1H1 3165 aa8.23□□□□□ -1.09
USP3-204ENST00000540797 ADGRG4Q8IZF6 3080 aa8.23□□□□□ -1.09
USP3-204ENST00000540797 Q1T7F1 81 aa8.23□□□□□ -1.09
USP3-204ENST00000540797 LRBAP50851 2863 aa8.21□□□□□ -1.1
USP3-204ENST00000540797 R4GN34 69 aa8.18□□□□□ -1.1
USP3-204ENST00000540797 KRTAP7-1Q8IUC3 87 aa8.16□□□□□ -1.1
USP3-204ENST00000540797 DMAC1Q96GE9 116 aa8.16□□□□□ -1.1
USP3-204ENST00000540797 DNAH14Q0VDD8 3507 aa8.16□□□□□ -1.1
USP3-204ENST00000540797 NBEAQ8NFP9 2946 aa8.16□□□□□ -1.1
USP3-204ENST00000540797 LINC01558Q9Y6Z2 57 aa8.16□□□□□ -1.1
USP3-204ENST00000540797 FLG2Q5D862 2391 aaPredicted RBP8.14□□□□□ -1.11
USP3-204ENST00000540797 ZZEF1O43149 2961 aa8.14□□□□□ -1.11
USP3-204ENST00000540797 DMBT1Q9UGM3 2413 aaPredicted RBP8.14□□□□□ -1.11
USP3-204ENST00000540797 CRYBG3Q68DQ2 2970 aa8.13□□□□□ -1.11
USP3-204ENST00000540797 RPS29P62273 56 aaKnown RBP8.13□□□□□ -1.11
USP3-204ENST00000540797 Q75L30 129 aa8.12□□□□□ -1.11
USP3-204ENST00000540797 FREM2Q5SZK8 3169 aa8.11□□□□□ -1.11
USP3-204ENST00000540797 KTN1-AS1Q86SY8 53 aa8.1□□□□□ -1.11
USP3-204ENST00000540797 NIPBLQ6KC79 2804 aaeCLIP8.1□□□□□ -1.11
USP3-204ENST00000540797 ASB16-AS1Q495Z4 193 aa8.09□□□□□ -1.11
USP3-204ENST00000540797 CYSTM1Q9H1C7 97 aa8.09□□□□□ -1.11
USP3-204ENST00000540797 KRTAP29-1A8MX34 341 aaPredicted RBP8.09□□□□□ -1.12
USP3-204ENST00000540797 KRTAP13-2Q52LG2 175 aa8.08□□□□□ -1.12
USP3-204ENST00000540797 NOTCH2NLQ7Z3S9 236 aa8.07□□□□□ -1.12
USP3-204ENST00000540797 DMXL1Q9Y485 3027 aa8.07□□□□□ -1.12
USP3-204ENST00000540797 KRTAP13-1Q8IUC0 172 aa8.06□□□□□ -1.12
USP3-204ENST00000540797 SPTBN5Q9NRC6 3674 aaKnown RBP8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 73 ms