RNA–Protein interactions for RNA: ENST00000539097.2

HIF1A-204, Transcript of hypoxia inducible factor 1 subunit alpha, humanhuman

TSL 1 (best) BASIC

Gene HIF1A, Length 3,956 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF1A-204ENST00000539097 ETDBQ3ZM63 59 aa0.27□□□□□ -2.37
HIF1A-204ENST00000539097 VAMP8Q9BV40 100 aa0.27□□□□□ -2.37
HIF1A-204ENST00000539097 UQCR10Q9UDW1 63 aa0.27□□□□□ -2.37
HIF1A-204ENST00000539097 TPRKBQ9Y3C4 175 aa0.27□□□□□ -2.37
HIF1A-204ENST00000539097 SPTA1P02549 2419 aa0.27□□□□□ -2.37
HIF1A-204ENST00000539097 LOC730098B7Z3J9 87 aa0.27□□□□□ -2.37
HIF1A-204ENST00000539097 ATOX1O00244 68 aa0.27□□□□□ -2.37
HIF1A-204ENST00000539097 SEC11AP67812 179 aa0.27□□□□□ -2.37
HIF1A-204ENST00000539097 RBM3P98179 157 aaKnown RBP0.27□□□□□ -2.37
HIF1A-204ENST00000539097 Q8N6K4 173 aa0.27□□□□□ -2.37
HIF1A-204ENST00000539097 PSENENQ9NZ42 101 aa0.27□□□□□ -2.37
HIF1A-204ENST00000539097 TRBV6-8A0A0A6YYG3 113 aa0.26□□□□□ -2.37
HIF1A-204ENST00000539097 TRAV12-3A0A0B4J271 114 aa0.26□□□□□ -2.37
HIF1A-204ENST00000539097 M0R135 149 aa0.26□□□□□ -2.37
HIF1A-204ENST00000539097 ELOF1P60002 83 aaKnown RBP0.26□□□□□ -2.37
HIF1A-204ENST00000539097 GINS4Q9BRT9 223 aa0.26□□□□□ -2.37
HIF1A-204ENST00000539097 PIGBOS1A0A0B4J2F0 54 aa0.26□□□□□ -2.37
HIF1A-204ENST00000539097 PCBD1P61457 104 aa0.26□□□□□ -2.37
HIF1A-204ENST00000539097 LENEPQ9Y5L5 61 aa0.26□□□□□ -2.37
HIF1A-204ENST00000539097 SONP18583 2426 aaKnown RBP0.26□□□□□ -2.37
HIF1A-204ENST00000539097 PDCD5O14737 125 aa0.26□□□□□ -2.37
HIF1A-204ENST00000539097 CYB5AP00167 134 aa0.26□□□□□ -2.37
HIF1A-204ENST00000539097 CKS2P33552 79 aa0.26□□□□□ -2.37
HIF1A-204ENST00000539097 BET1LQ9NYM9 111 aa0.26□□□□□ -2.37
HIF1A-204ENST00000539097 JMJD7-PLA2G4BH0Y9G9 81 aa0.25□□□□□ -2.37
HIF1A-204ENST00000539097 NDUFC1O43677 76 aa0.25□□□□□ -2.37
HIF1A-204ENST00000539097 SNRPFP62306 86 aaKnown RBP0.25□□□□□ -2.37
HIF1A-204ENST00000539097 KRTAP19-6Q3LI70 58 aa0.25□□□□□ -2.37
HIF1A-204ENST00000539097 GTF2H5Q6ZYL4 71 aa0.25□□□□□ -2.37
HIF1A-204ENST00000539097 HIGD1CA8MV81 97 aa0.25□□□□□ -2.37
HIF1A-204ENST00000539097 I3L2K1 104 aa0.25□□□□□ -2.37
HIF1A-204ENST00000539097 M0R233 179 aa0.25□□□□□ -2.37
HIF1A-204ENST00000539097 FXYD3Q14802 87 aa0.25□□□□□ -2.37
HIF1A-204ENST00000539097 PEA15Q15121 130 aa0.25□□□□□ -2.37
HIF1A-204ENST00000539097 SPATA45Q537H7 98 aa0.25□□□□□ -2.37
HIF1A-204ENST00000539097 SVBPQ8N300 66 aa0.25□□□□□ -2.37
HIF1A-204ENST00000539097 S100A16Q96FQ6 103 aaKnown RBP0.25□□□□□ -2.37
HIF1A-204ENST00000539097 DOPEY2Q9Y3R5 2298 aa0.25□□□□□ -2.37
HIF1A-204ENST00000539097 PLCE1Q9P212 2302 aa0.25□□□□□ -2.37
HIF1A-204ENST00000539097 GVQW2A0A096LPI5 108 aaPredicted RBP0.24□□□□□ -2.37
HIF1A-204ENST00000539097 IQCF6A8MYZ5 107 aa0.24□□□□□ -2.37
HIF1A-204ENST00000539097 HMGN2P05204 90 aaKnown RBP0.24□□□□□ -2.37
HIF1A-204ENST00000539097 SSBP1Q04837 148 aaKnown RBP0.24□□□□□ -2.37
HIF1A-204ENST00000539097 LINC00643Q86TS7 51 aa0.24□□□□□ -2.37
HIF1A-204ENST00000539097 SPTSSAQ969W0 71 aa0.24□□□□□ -2.37
HIF1A-204ENST00000539097 MGST2Q99735 147 aa0.24□□□□□ -2.37
HIF1A-204ENST00000539097 PMCHL2Q9BQD1 86 aa0.24□□□□□ -2.37
HIF1A-204ENST00000539097 SMCO4Q9NRQ5 59 aa0.24□□□□□ -2.37
HIF1A-204ENST00000539097 SPTBN2O15020 2390 aa0.24□□□□□ -2.37
HIF1A-204ENST00000539097 CASC2Q6XLA1 102 aa0.24□□□□□ -2.37
HIF1A-204ENST00000539097 ZNF720Q7Z2F6 126 aa0.24□□□□□ -2.37
HIF1A-204ENST00000539097 PRO1854Q9UHT4 67 aa0.24□□□□□ -2.37
HIF1A-204ENST00000539097 SPCS1Q9Y6A9 102 aa0.24□□□□□ -2.37
HIF1A-204ENST00000539097 V9GYH0 126 aa0.24□□□□□ -2.37
HIF1A-204ENST00000539097 ACANP16112 2415 aa0.24□□□□□ -2.37
HIF1A-204ENST00000539097 FAM24AA6NFZ4 105 aa0.24□□□□□ -2.37
HIF1A-204ENST00000539097 GNGT2O14610 69 aa0.24□□□□□ -2.37
HIF1A-204ENST00000539097 SNAPC5O75971 98 aa0.24□□□□□ -2.37
HIF1A-204ENST00000539097 APOC3P02656 99 aa0.24□□□□□ -2.37
HIF1A-204ENST00000539097 COX8AP10176 69 aa0.24□□□□□ -2.37
HIF1A-204ENST00000539097 RPL37P61927 97 aaKnown RBP0.24□□□□□ -2.37
HIF1A-204ENST00000539097 AHCTF1Q8WYP5 2266 aa0.24□□□□□ -2.37
HIF1A-204ENST00000539097 F8WEM9 126 aa0.23□□□□□ -2.37
HIF1A-204ENST00000539097 ARMS2P0C7Q2 107 aa0.23□□□□□ -2.37
HIF1A-204ENST00000539097 SAA2P0DJI9 122 aaPredicted RBP0.23□□□□□ -2.37
HIF1A-204ENST00000539097 Q6JHZ5 121 aa0.23□□□□□ -2.37
HIF1A-204ENST00000539097 S100A13Q99584 98 aa0.23□□□□□ -2.37
HIF1A-204ENST00000539097 DMBT1Q9UGM3 2413 aaPredicted RBP0.23□□□□□ -2.37
HIF1A-204ENST00000539097 TRAV23DV6A0A075B6W5 121 aa0.23□□□□□ -2.37
HIF1A-204ENST00000539097 TMEM30CPA0ZSE6 113 aa0.23□□□□□ -2.37
HIF1A-204ENST00000539097 C7orf77A4D0Y5 90 aa0.23□□□□□ -2.37
HIF1A-204ENST00000539097 LINC01546A6NGU7 62 aa0.23□□□□□ -2.37
HIF1A-204ENST00000539097 DNAL4O96015 105 aa0.23□□□□□ -2.37
HIF1A-204ENST00000539097 LINC00208Q96KT6 92 aa0.23□□□□□ -2.37
HIF1A-204ENST00000539097 SMIM7Q9BQ49 75 aa0.23□□□□□ -2.37
HIF1A-204ENST00000539097 LOC107984156A0A0G2JMH3 177 aa0.23□□□□□ -2.37
HIF1A-204ENST00000539097 NAP1L6A6NFF2 107 aa0.23□□□□□ -2.37
HIF1A-204ENST00000539097 H3BUT2 72 aa0.23□□□□□ -2.37
HIF1A-204ENST00000539097 CAV3P56539 151 aa0.23□□□□□ -2.37
HIF1A-204ENST00000539097 TMEM170BQ5T4T1 132 aa0.23□□□□□ -2.37
HIF1A-204ENST00000539097 ARL17AQ8IVW1 177 aa0.23□□□□□ -2.37
HIF1A-204ENST00000539097 MRPL36Q9P0J6 103 aaKnown RBP0.23□□□□□ -2.37
HIF1A-204ENST00000539097 SPTBN1Q01082 2364 aaKnown RBP0.23□□□□□ -2.37
HIF1A-204ENST00000539097 CENPEQ02224 2701 aa0.23□□□□□ -2.37
HIF1A-204ENST00000539097 FXYD6-FXYD2A0A087WZ82 144 aa0.22□□□□□ -2.37
HIF1A-204ENST00000539097 SNCGO76070 127 aa0.22□□□□□ -2.37
HIF1A-204ENST00000539097 ACYP1P07311 99 aa0.22□□□□□ -2.37
HIF1A-204ENST00000539097 CYP2G1PQ6ZSU1 146 aa0.22□□□□□ -2.37
HIF1A-204ENST00000539097 APC2O95996 2303 aa0.22□□□□□ -2.37
HIF1A-204ENST00000539097 PTPRQQ9UMZ3 2332 aa0.22□□□□□ -2.37
HIF1A-204ENST00000539097 SPRR2DP22532 72 aa0.22□□□□□ -2.37
HIF1A-204ENST00000539097 C6orf201Q7Z4U5 140 aa0.22□□□□□ -2.37
HIF1A-204ENST00000539097 C20orf197Q8N268 126 aa0.22□□□□□ -2.37
HIF1A-204ENST00000539097 COX7B2Q8TF08 81 aa0.22□□□□□ -2.37
HIF1A-204ENST00000539097 WNK1Q9H4A3 2382 aa0.22□□□□□ -2.37
HIF1A-204ENST00000539097 LOC285095A0A1B0GVY8 99 aa0.22□□□□□ -2.37
HIF1A-204ENST00000539097 LY6G6CO95867 125 aa0.22□□□□□ -2.37
HIF1A-204ENST00000539097 COX17Q14061 63 aa0.22□□□□□ -2.37
HIF1A-204ENST00000539097 HMGN3Q15651 99 aa0.22□□□□□ -2.37
HIF1A-204ENST00000539097 WFDC10AQ9H1F0 79 aa0.22□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms