RNA–Protein interactions for RNA: ENST00000539080.1

CLIP1-211, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 4

Gene CLIP1, Length 560 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-211ENST00000539080 CFC1BP0CG36 223 aa10.45□□□□□ -0.74
CLIP1-211ENST00000539080 CFC1P0CG37 223 aa10.45□□□□□ -0.74
CLIP1-211ENST00000539080 PPDPFLQ8WWR9 84 aa10.45□□□□□ -0.74
CLIP1-211ENST00000539080 RAB37Q96AX2 223 aa10.44□□□□□ -0.74
CLIP1-211ENST00000539080 IGLV8-61A0A075B6I0 122 aa10.43□□□□□ -0.74
CLIP1-211ENST00000539080 A0A0B4J2C4 111 aa10.43□□□□□ -0.74
CLIP1-211ENST00000539080 A0A0G2JQZ4 141 aa10.43□□□□□ -0.74
CLIP1-211ENST00000539080 Q6JHZ5 121 aa10.43□□□□□ -0.74
CLIP1-211ENST00000539080 C2orf91Q6ZV80 131 aa10.43□□□□□ -0.74
CLIP1-211ENST00000539080 LCE2AQ5TA79 106 aaPredicted RBP10.42□□□□□ -0.74
CLIP1-211ENST00000539080 TCL1BO95988 128 aa10.41□□□□□ -0.74
CLIP1-211ENST00000539080 C1orf195Q5TG92 126 aa10.41□□□□□ -0.74
CLIP1-211ENST00000539080 FAT4Q6V0I7 4981 aa10.4□□□□□ -0.74
CLIP1-211ENST00000539080 H0YGX0 51 aa10.39□□□□□ -0.75
CLIP1-211ENST00000539080 SNCGO76070 127 aa10.39□□□□□ -0.75
CLIP1-211ENST00000539080 OCIAD2Q56VL3 154 aa10.39□□□□□ -0.75
CLIP1-211ENST00000539080 CLEC2BQ92478 149 aa10.39□□□□□ -0.75
CLIP1-211ENST00000539080 TMEM238LA0A1B0GVL6 79 aa10.38□□□□□ -0.75
CLIP1-211ENST00000539080 A6NJY4 79 aa10.38□□□□□ -0.75
CLIP1-211ENST00000539080 CEND1Q8N111 149 aa10.38□□□□□ -0.75
CLIP1-211ENST00000539080 C9orf92A6NGG3 77 aa10.37□□□□□ -0.75
CLIP1-211ENST00000539080 IGFL1Q6UW32 110 aa10.36□□□□□ -0.75
CLIP1-211ENST00000539080 SNHG12Q9BXW3 62 aa10.36□□□□□ -0.75
CLIP1-211ENST00000539080 KRTAP4-1Q9BYQ7 146 aa10.36□□□□□ -0.75
CLIP1-211ENST00000539080 TRBV7-7A0A0K0K1E9 115 aa10.33□□□□□ -0.76
CLIP1-211ENST00000539080 PRO1854Q9UHT4 67 aa10.33□□□□□ -0.76
CLIP1-211ENST00000539080 PYY3Q5JQD4 70 aa10.32□□□□□ -0.76
CLIP1-211ENST00000539080 A0A1B0GX51 115 aa10.31□□□□□ -0.76
CLIP1-211ENST00000539080 GHRHP01286 108 aa10.3□□□□□ -0.76
CLIP1-211ENST00000539080 FAM218AQ96MZ4 157 aa10.3□□□□□ -0.76
CLIP1-211ENST00000539080 FXYD2P54710 66 aa10.29□□□□□ -0.76
CLIP1-211ENST00000539080 HSD52Q0P140 79 aa10.27□□□□□ -0.77
CLIP1-211ENST00000539080 PCOTHQ58A44 107 aa10.27□□□□□ -0.77
CLIP1-211ENST00000539080 H3BUT2 72 aa10.26□□□□□ -0.77
CLIP1-211ENST00000539080 Q6Q795 121 aa10.25□□□□□ -0.77
CLIP1-211ENST00000539080 NDUFV3P56181 108 aaKnown RBP10.24□□□□□ -0.77
CLIP1-211ENST00000539080 TRIAP1O43715 76 aa10.23□□□□□ -0.77
CLIP1-211ENST00000539080 RPL37P61927 97 aaKnown RBP10.22□□□□□ -0.77
CLIP1-211ENST00000539080 TEN1Q86WV5 123 aa10.21□□□□□ -0.77
CLIP1-211ENST00000539080 SS18L2Q9UHA2 77 aa10.21□□□□□ -0.77
CLIP1-211ENST00000539080 TMA7Q9Y2S6 64 aaKnown RBP10.21□□□□□ -0.77
CLIP1-211ENST00000539080 LST1O00453 97 aa10.2□□□□□ -0.78
CLIP1-211ENST00000539080 UQCR10Q9UDW1 63 aa10.2□□□□□ -0.78
CLIP1-211ENST00000539080 H3BMG7 143 aa10.18□□□□□ -0.78
CLIP1-211ENST00000539080 FABP2P12104 132 aa10.18□□□□□ -0.78
CLIP1-211ENST00000539080 H3BQ85 93 aa10.17□□□□□ -0.78
CLIP1-211ENST00000539080 DNAL4O96015 105 aa10.16□□□□□ -0.78
CLIP1-211ENST00000539080 COX6CP09669 75 aa10.16□□□□□ -0.78
CLIP1-211ENST00000539080 PSMB2P49721 201 aa10.16□□□□□ -0.78
CLIP1-211ENST00000539080 K7ERJ3 54 aa10.15□□□□□ -0.78
CLIP1-211ENST00000539080 ORMDL1Q9P0S3 153 aa10.14□□□□□ -0.79
CLIP1-211ENST00000539080 A0A087WSZ3 146 aa10.11□□□□□ -0.79
CLIP1-211ENST00000539080 KRTAP19-2Q3LHN2 52 aa10.11□□□□□ -0.79
CLIP1-211ENST00000539080 LCE2CQ5TA81 110 aa10.11□□□□□ -0.79
CLIP1-211ENST00000539080 KRTAP9-2Q9BYQ4 174 aa10.11□□□□□ -0.79
CLIP1-211ENST00000539080 TMEM256-PLSCR3K7ERE1 68 aa10.1□□□□□ -0.79
CLIP1-211ENST00000539080 OBSCN-AS1Q96MR7 158 aa10.1□□□□□ -0.79
CLIP1-211ENST00000539080 Q75L30 129 aa10.08□□□□□ -0.8
CLIP1-211ENST00000539080 A0A1W2PNM2 257 aa10.06□□□□□ -0.8
CLIP1-211ENST00000539080 ANKRD29Q8N6D5 301 aa10.06□□□□□ -0.8
CLIP1-211ENST00000539080 TRBV7-4A0A0J9YYF1 115 aa10.05□□□□□ -0.8
CLIP1-211ENST00000539080 TRACP01848 142 aa10.04□□□□□ -0.8
CLIP1-211ENST00000539080 ATP11AUNQ6ZP68 121 aa10.04□□□□□ -0.8
CLIP1-211ENST00000539080 Q96NJ1 140 aa10.04□□□□□ -0.8
CLIP1-211ENST00000539080 UBE2V1Q13404 147 aa10.03□□□□□ -0.8
CLIP1-211ENST00000539080 SCGB1C2P0DMR2 95 aa10.01□□□□□ -0.81
CLIP1-211ENST00000539080 MT1HP80294 61 aa9.99□□□□□ -0.81
CLIP1-211ENST00000539080 C20orf166-AS1Q96NR2 134 aa9.98□□□□□ -0.81
CLIP1-211ENST00000539080 A0A1B0GV72 72 aa9.97□□□□□ -0.81
CLIP1-211ENST00000539080 CCKP06307 115 aa9.97□□□□□ -0.81
CLIP1-211ENST00000539080 M0R143 59 aa9.96□□□□□ -0.82
CLIP1-211ENST00000539080 A8MUU9 505 aa9.95□□□□□ -0.82
CLIP1-211ENST00000539080 SIGMAR1Q99720 223 aa9.95□□□□□ -0.82
CLIP1-211ENST00000539080 SMIM6P0DI80 62 aa9.93□□□□□ -0.82
CLIP1-211ENST00000539080 RBM3P98179 157 aaKnown RBP9.93□□□□□ -0.82
CLIP1-211ENST00000539080 COX6B2Q6YFQ2 88 aa9.93□□□□□ -0.82
CLIP1-211ENST00000539080 IGKV4-1P06312 121 aa9.92□□□□□ -0.82
CLIP1-211ENST00000539080 DSCR10P59022 87 aa9.91□□□□□ -0.82
CLIP1-211ENST00000539080 LINC00472Q9H8W2 130 aa9.91□□□□□ -0.82
CLIP1-211ENST00000539080 DSCR8Q96T75 97 aa9.9□□□□□ -0.82
CLIP1-211ENST00000539080 BAALC-AS2P0C853 105 aa9.89□□□□□ -0.83
CLIP1-211ENST00000539080 LINC00313P59037 77 aa9.89□□□□□ -0.83
CLIP1-211ENST00000539080 C21orf62-AS1Q17RA5 79 aa9.88□□□□□ -0.83
CLIP1-211ENST00000539080 LCE2DQ5TA82 110 aaPredicted RBP9.87□□□□□ -0.83
CLIP1-211ENST00000539080 ATXN8Q156A1 80 aa9.86□□□□□ -0.83
CLIP1-211ENST00000539080 VPS25Q9BRG1 176 aa9.86□□□□□ -0.83
CLIP1-211ENST00000539080 C9JAW5 83 aa9.84□□□□□ -0.83
CLIP1-211ENST00000539080 KRTAP16-1A8MUX0 517 aa9.83□□□□□ -0.84
CLIP1-211ENST00000539080 DEFB116Q30KQ4 102 aa9.83□□□□□ -0.84
CLIP1-211ENST00000539080 M0R2T5 61 aa9.82□□□□□ -0.84
CLIP1-211ENST00000539080 JMJD7-PLA2G4BH0Y9G9 81 aa9.81□□□□□ -0.84
CLIP1-211ENST00000539080 TSTD3H0UI37 97 aa9.8□□□□□ -0.84
CLIP1-211ENST00000539080 LORP23490 312 aaPredicted RBP9.8□□□□□ -0.84
CLIP1-211ENST00000539080 KRTAP10-6P60371 365 aaPredicted RBP9.8□□□□□ -0.84
CLIP1-211ENST00000539080 NAA38Q9BRA0 125 aaKnown RBP9.8□□□□□ -0.84
CLIP1-211ENST00000539080 IGHV6-1A0A0B4J1U7 121 aa9.79□□□□□ -0.84
CLIP1-211ENST00000539080 LYRM7Q5U5X0 104 aa9.79□□□□□ -0.84
CLIP1-211ENST00000539080 NOTCH2NLQ7Z3S9 236 aa9.78□□□□□ -0.84
CLIP1-211ENST00000539080 A0A1B0GW54 56 aa9.77□□□□□ -0.85
CLIP1-211ENST00000539080 C8orf87E5RJ46 101 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms