RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 GAGE2AQ6NT46 116 aa3.34□□□□□ -1.87
CD44-237ENST00000534082 SSBP3-AS1Q7Z2R9 100 aa3.34□□□□□ -1.87
CD44-237ENST00000534082 C20orf78Q9BR46 151 aa3.34□□□□□ -1.87
CD44-237ENST00000534082 LAMTOR3Q9UHA4 124 aa3.34□□□□□ -1.87
CD44-237ENST00000534082 TRBV20-1A0A075B6N2 111 aa3.33□□□□□ -1.88
CD44-237ENST00000534082 A0A1B0GWB2 263 aa3.33□□□□□ -1.88
CD44-237ENST00000534082 KRTAP10-10P60014 251 aa3.33□□□□□ -1.88
CD44-237ENST00000534082 MPLKIPQ8TAP9 179 aa3.33□□□□□ -1.88
CD44-237ENST00000534082 C18orf32Q8TCD1 76 aa3.33□□□□□ -1.88
CD44-237ENST00000534082 TMEM141Q96I45 108 aa3.33□□□□□ -1.88
CD44-237ENST00000534082 TIMM17AQ99595 171 aa3.33□□□□□ -1.88
CD44-237ENST00000534082 PMCHL2Q9BQD1 86 aa3.33□□□□□ -1.88
CD44-237ENST00000534082 A0A1B0GUT8 65 aa3.32□□□□□ -1.88
CD44-237ENST00000534082 A8MWL6 223 aa3.32□□□□□ -1.88
CD44-237ENST00000534082 SNCGO76070 127 aa3.32□□□□□ -1.88
CD44-237ENST00000534082 ZC2HC1BQ5TFG8 222 aa3.32□□□□□ -1.88
CD44-237ENST00000534082 ANKRD29Q8N6D5 301 aa3.32□□□□□ -1.88
CD44-237ENST00000534082 SMCR5Q8TEV8 140 aa3.32□□□□□ -1.88
CD44-237ENST00000534082 PRELID3AQ96N28 172 aa3.32□□□□□ -1.88
CD44-237ENST00000534082 SMIM2Q9BVW6 85 aa3.32□□□□□ -1.88
CD44-237ENST00000534082 EIF5A2Q9GZV4 153 aaKnown RBP3.32□□□□□ -1.88
CD44-237ENST00000534082 H3BMG7 143 aa3.31□□□□□ -1.88
CD44-237ENST00000534082 H3BUT2 72 aa3.31□□□□□ -1.88
CD44-237ENST00000534082 PRR15Q8IV56 129 aa3.31□□□□□ -1.88
CD44-237ENST00000534082 RAB37Q96AX2 223 aa3.31□□□□□ -1.88
CD44-237ENST00000534082 CDKN2A-AS1Q9UH64 79 aa3.31□□□□□ -1.88
CD44-237ENST00000534082 HIGD1CA8MV81 97 aa3.3□□□□□ -1.88
CD44-237ENST00000534082 SYS1-DBNDD2H3BUS1 97 aa3.3□□□□□ -1.88
CD44-237ENST00000534082 MRPL51Q4U2R6 128 aaKnown RBP3.3□□□□□ -1.88
CD44-237ENST00000534082 SLC25A34Q6PIV7 304 aa3.3□□□□□ -1.88
CD44-237ENST00000534082 Q8NDZ9 215 aa3.3□□□□□ -1.88
CD44-237ENST00000534082 LIMD2Q9BT23 127 aa3.3□□□□□ -1.88
CD44-237ENST00000534082 RBM12B-AS1Q9P1G2 102 aa3.3□□□□□ -1.88
CD44-237ENST00000534082 SMIM1B2RUZ4 78 aa3.29□□□□□ -1.88
CD44-237ENST00000534082 C8orf87E5RJ46 101 aa3.29□□□□□ -1.88
CD44-237ENST00000534082 ETDBQ3ZM63 59 aa3.29□□□□□ -1.88
CD44-237ENST00000534082 FAM19A3Q7Z5A8 133 aa3.29□□□□□ -1.88
CD44-237ENST00000534082 COX7B2Q8TF08 81 aa3.29□□□□□ -1.88
CD44-237ENST00000534082 PPDPFLQ8WWR9 84 aa3.29□□□□□ -1.88
CD44-237ENST00000534082 PRO0461Q9UI25 63 aa3.29□□□□□ -1.88
CD44-237ENST00000534082 TRACP01848 142 aa3.28□□□□□ -1.88
CD44-237ENST00000534082 LGALS3P17931 250 aaKnown RBP3.28□□□□□ -1.88
CD44-237ENST00000534082 CKS2P33552 79 aa3.28□□□□□ -1.88
CD44-237ENST00000534082 RIGQ13278 110 aa3.28□□□□□ -1.88
CD44-237ENST00000534082 FAM104BQ5XKR9 115 aa3.28□□□□□ -1.88
CD44-237ENST00000534082 C2orf66Q6UXQ4 117 aa3.28□□□□□ -1.88
CD44-237ENST00000534082 BRK1Q8WUW1 75 aa3.28□□□□□ -1.88
CD44-237ENST00000534082 AMELXQ99217 191 aa3.28□□□□□ -1.88
CD44-237ENST00000534082 SND1-IT1Q9HBX3 110 aa3.28□□□□□ -1.88
CD44-237ENST00000534082 TRBV7-6A0A0J9YX20 115 aa3.27□□□□□ -1.89
CD44-237ENST00000534082 A0A1B0GXF2 115 aa3.27□□□□□ -1.89
CD44-237ENST00000534082 NPYP01303 97 aa3.27□□□□□ -1.89
CD44-237ENST00000534082 SRP19P09132 144 aaKnown RBP3.27□□□□□ -1.89
CD44-237ENST00000534082 COX7CP15954 63 aa3.27□□□□□ -1.89
CD44-237ENST00000534082 KRTDAPP60985 99 aa3.27□□□□□ -1.89
CD44-237ENST00000534082 IMUPQ9GZP8 106 aa3.27□□□□□ -1.89
CD44-237ENST00000534082 SMIM26A0A096LP01 95 aa3.26□□□□□ -1.89
CD44-237ENST00000534082 TRBV7-7A0A0K0K1E9 115 aa3.26□□□□□ -1.89
CD44-237ENST00000534082 ETDCA0A1B0GVM5 59 aa3.26□□□□□ -1.89
CD44-237ENST00000534082 D6R8Y8 96 aa3.26□□□□□ -1.89
CD44-237ENST00000534082 ERC2-IT1O76042 136 aa3.26□□□□□ -1.89
CD44-237ENST00000534082 SPRR1AP35321 89 aa3.26□□□□□ -1.89
CD44-237ENST00000534082 SCGB1D4Q6XE38 83 aa3.26□□□□□ -1.89
CD44-237ENST00000534082 PCP2Q8IVA1 136 aa3.26□□□□□ -1.89
CD44-237ENST00000534082 KRTAP2-3P0C7H8 128 aa3.25□□□□□ -1.89
CD44-237ENST00000534082 C3orf79P0CE67 100 aa3.25□□□□□ -1.89
CD44-237ENST00000534082 KRTAP5-11Q6L8G4 156 aa3.25□□□□□ -1.89
CD44-237ENST00000534082 KRTAP2-4Q9BYR9 128 aa3.25□□□□□ -1.89
CD44-237ENST00000534082 SERP1Q9Y6X1 66 aa3.25□□□□□ -1.89
CD44-237ENST00000534082 LOC389332A0A1B0GUA5 103 aa3.24□□□□□ -1.89
CD44-237ENST00000534082 E9PLD3 99 aa3.24□□□□□ -1.89
CD44-237ENST00000534082 H3BT86 120 aa3.24□□□□□ -1.89
CD44-237ENST00000534082 SERF1AO75920 110 aa3.24□□□□□ -1.89
CD44-237ENST00000534082 SMIM13P0DJ93 91 aa3.24□□□□□ -1.89
CD44-237ENST00000534082 PAPPA-AS1Q5QFB9 102 aa3.24□□□□□ -1.89
CD44-237ENST00000534082 KTN1-AS1Q86SY8 53 aa3.24□□□□□ -1.89
CD44-237ENST00000534082 TEN1Q86WV5 123 aa3.24□□□□□ -1.89
CD44-237ENST00000534082 COPS9Q8WXC6 57 aa3.24□□□□□ -1.89
CD44-237ENST00000534082 TRAPPC1Q9Y5R8 145 aa3.24□□□□□ -1.89
CD44-237ENST00000534082 TRAV9-1A0A075B6T8 112 aa3.23□□□□□ -1.89
CD44-237ENST00000534082 COX8AP10176 69 aa3.23□□□□□ -1.89
CD44-237ENST00000534082 TMEM136Q6ZRR5 245 aa3.23□□□□□ -1.89
CD44-237ENST00000534082 C2orf91Q6ZV80 131 aa3.23□□□□□ -1.89
CD44-237ENST00000534082 Q75L30 129 aa3.23□□□□□ -1.89
CD44-237ENST00000534082 DSCR8Q96T75 97 aa3.23□□□□□ -1.89
CD44-237ENST00000534082 IGIPA6NJ69 53 aa3.22□□□□□ -1.89
CD44-237ENST00000534082 TCL1BO95988 128 aa3.22□□□□□ -1.89
CD44-237ENST00000534082 IGKCP01834 107 aa3.22□□□□□ -1.89
CD44-237ENST00000534082 LINC01545Q5VT33 79 aa3.22□□□□□ -1.89
CD44-237ENST00000534082 ATP5L2Q7Z4Y8 100 aa3.22□□□□□ -1.89
CD44-237ENST00000534082 Q9BRP9 147 aa3.22□□□□□ -1.89
CD44-237ENST00000534082 KCNQ1DNQ9H478 68 aa3.22□□□□□ -1.89
CD44-237ENST00000534082 IGLV5-45A0A087WSX0 123 aa3.21□□□□□ -1.9
CD44-237ENST00000534082 NDUFS5O43920 106 aa3.21□□□□□ -1.9
CD44-237ENST00000534082 NPC2P61916 151 aa3.21□□□□□ -1.9
CD44-237ENST00000534082 COX17Q14061 63 aa3.21□□□□□ -1.9
CD44-237ENST00000534082 ATP11AUNQ6ZP68 121 aa3.21□□□□□ -1.9
CD44-237ENST00000534082 BAGE3Q86Y29 109 aa3.21□□□□□ -1.9
CD44-237ENST00000534082 CEND1Q8N111 149 aa3.21□□□□□ -1.9
CD44-237ENST00000534082 C20orf166-AS1Q96NR2 134 aa3.21□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms