RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 SLC25A6P12236 298 aa0.87□□□□□ -2.27
CD44-233ENST00000531141 KRTDAPP60985 99 aa0.87□□□□□ -2.27
CD44-233ENST00000531141 PEA15Q15121 130 aa0.87□□□□□ -2.27
CD44-233ENST00000531141 HEPN1Q6WQI6 88 aa0.87□□□□□ -2.27
CD44-233ENST00000531141 Q8N8P6 123 aa0.87□□□□□ -2.27
CD44-233ENST00000531141 SNHG12Q9BXW3 62 aa0.87□□□□□ -2.27
CD44-233ENST00000531141 SMCO4Q9NRQ5 59 aa0.87□□□□□ -2.27
CD44-233ENST00000531141 CDC42SE1Q9NRR8 79 aa0.87□□□□□ -2.27
CD44-233ENST00000531141 TMEM14BQ9NUH8 114 aa0.87□□□□□ -2.27
CD44-233ENST00000531141 MRPL35Q9NZE8 188 aaKnown RBP0.87□□□□□ -2.27
CD44-233ENST00000531141 TMEM14CQ9P0S9 112 aa0.87□□□□□ -2.27
CD44-233ENST00000531141 LINC00312Q9Y6C7 94 aa0.87□□□□□ -2.27
CD44-233ENST00000531141 MDN1Q9NU22 5596 aa0.86□□□□□ -2.27
CD44-233ENST00000531141 TEX49A0A1B0GTD5 131 aa0.86□□□□□ -2.27
CD44-233ENST00000531141 HIGD1CA8MV81 97 aa0.86□□□□□ -2.27
CD44-233ENST00000531141 M0R2T5 61 aa0.86□□□□□ -2.27
CD44-233ENST00000531141 PDCD5O14737 125 aa0.86□□□□□ -2.27
CD44-233ENST00000531141 PPYP01298 95 aa0.86□□□□□ -2.27
CD44-233ENST00000531141 SEC11AP67812 179 aa0.86□□□□□ -2.27
CD44-233ENST00000531141 MT1HP80294 61 aa0.86□□□□□ -2.27
CD44-233ENST00000531141 INSL4Q14641 139 aa0.86□□□□□ -2.27
CD44-233ENST00000531141 ZNF818PQ6ZRF7 136 aa0.86□□□□□ -2.27
CD44-233ENST00000531141 USMG5Q96IX5 58 aa0.86□□□□□ -2.27
CD44-233ENST00000531141 ODF3Q96PU9 254 aa0.86□□□□□ -2.27
CD44-233ENST00000531141 AMELYQ99218 206 aa0.86□□□□□ -2.27
CD44-233ENST00000531141 MGST2Q99735 147 aa0.86□□□□□ -2.27
CD44-233ENST00000531141 CYP4F30PQ9H0H9 118 aa0.86□□□□□ -2.27
CD44-233ENST00000531141 MRPL36Q9P0J6 103 aaKnown RBP0.86□□□□□ -2.27
CD44-233ENST00000531141 UQCR10Q9UDW1 63 aa0.86□□□□□ -2.27
CD44-233ENST00000531141 TRAV23DV6A0A075B6W5 121 aa0.85□□□□□ -2.27
CD44-233ENST00000531141 A0A1B0GWA3 101 aa0.85□□□□□ -2.27
CD44-233ENST00000531141 KANTRA0A1W2PQU2 76 aa0.85□□□□□ -2.27
CD44-233ENST00000531141 H3BUA1 57 aa0.85□□□□□ -2.27
CD44-233ENST00000531141 NDUFC1O43677 76 aa0.85□□□□□ -2.27
CD44-233ENST00000531141 IGLV3-1P01715 115 aa0.85□□□□□ -2.27
CD44-233ENST00000531141 IGKCP01834 107 aa0.85□□□□□ -2.27
CD44-233ENST00000531141 SMIM11AP58511 58 aa0.85□□□□□ -2.27
CD44-233ENST00000531141 UBE2G1P62253 170 aa0.85□□□□□ -2.27
CD44-233ENST00000531141 ADIRFQ15847 76 aa0.85□□□□□ -2.27
CD44-233ENST00000531141 TDRG1Q3Y452 100 aa0.85□□□□□ -2.27
CD44-233ENST00000531141 SPATA45Q537H7 98 aa0.85□□□□□ -2.27
CD44-233ENST00000531141 PYY3Q5JQD4 70 aa0.85□□□□□ -2.27
CD44-233ENST00000531141 PSMG4Q5JS54 123 aa0.85□□□□□ -2.27
CD44-233ENST00000531141 GDF5OSQ5U4N7 250 aa0.85□□□□□ -2.27
CD44-233ENST00000531141 CSAG1Q6PB30 78 aa0.85□□□□□ -2.27
CD44-233ENST00000531141 PPP1R1CQ8WVI7 109 aa0.85□□□□□ -2.27
CD44-233ENST00000531141 LEAP2Q969E1 77 aa0.85□□□□□ -2.27
CD44-233ENST00000531141 DSCR8Q96T75 97 aa0.85□□□□□ -2.27
CD44-233ENST00000531141 FAM103A1Q9BTL3 118 aaKnown RBP0.85□□□□□ -2.27
CD44-233ENST00000531141 TRBV7-1A0A0A6YYK4 115 aa0.84□□□□□ -2.27
CD44-233ENST00000531141 TRAV13-2A0A0B4J235 113 aa0.84□□□□□ -2.27
CD44-233ENST00000531141 TRAV12-3A0A0B4J271 114 aa0.84□□□□□ -2.27
CD44-233ENST00000531141 NAP1L6A6NFF2 107 aa0.84□□□□□ -2.27
CD44-233ENST00000531141 K7EP34 96 aa0.84□□□□□ -2.27
CD44-233ENST00000531141 M0R135 149 aa0.84□□□□□ -2.27
CD44-233ENST00000531141 ATOX1O00244 68 aa0.84□□□□□ -2.27
CD44-233ENST00000531141 HMGN4O00479 90 aa0.84□□□□□ -2.27
CD44-233ENST00000531141 SIX6O95475 246 aa0.84□□□□□ -2.27
CD44-233ENST00000531141 MPC2O95563 127 aa0.84□□□□□ -2.27
CD44-233ENST00000531141 CYB5AP00167 134 aa0.84□□□□□ -2.27
CD44-233ENST00000531141 APOC3P02656 99 aa0.84□□□□□ -2.27
CD44-233ENST00000531141 CCKP06307 115 aa0.84□□□□□ -2.27
CD44-233ENST00000531141 DEFA5Q01523 94 aa0.84□□□□□ -2.27
CD44-233ENST00000531141 Q0VG73 95 aa0.84□□□□□ -2.27
CD44-233ENST00000531141 PLGLAQ15195 96 aa0.84□□□□□ -2.27
CD44-233ENST00000531141 SPINK6Q6UWN8 80 aa0.84□□□□□ -2.27
CD44-233ENST00000531141 CYP2G1PQ6ZSU1 146 aa0.84□□□□□ -2.27
CD44-233ENST00000531141 RPS27LQ71UM5 84 aaKnown RBP0.84□□□□□ -2.27
CD44-233ENST00000531141 IFI27L1Q96BM0 104 aa0.84□□□□□ -2.27
CD44-233ENST00000531141 PMCHL2Q9BQD1 86 aa0.84□□□□□ -2.27
CD44-233ENST00000531141 NPVFQ9HCQ7 196 aa0.84□□□□□ -2.27
CD44-233ENST00000531141 AHNAK2Q8IVF2 5795 aa0.84□□□□□ -2.28
CD44-233ENST00000531141 A0A087WXM4 84 aa0.83□□□□□ -2.28
CD44-233ENST00000531141 NDUFA3O95167 84 aa0.83□□□□□ -2.28
CD44-233ENST00000531141 SFT2D2O95562 160 aa0.83□□□□□ -2.28
CD44-233ENST00000531141 DNAL4O96015 105 aa0.83□□□□□ -2.28
CD44-233ENST00000531141 ACYP1P07311 99 aa0.83□□□□□ -2.28
CD44-233ENST00000531141 IGLC1P0CG04 106 aa0.83□□□□□ -2.28
CD44-233ENST00000531141 DEFB130BP0DP73 79 aa0.83□□□□□ -2.28
CD44-233ENST00000531141 DEFB130AP0DP74 79 aa0.83□□□□□ -2.28
CD44-233ENST00000531141 UBE2D1P51668 147 aa0.83□□□□□ -2.28
CD44-233ENST00000531141 DEFB131AP59861 70 aa0.83□□□□□ -2.28
CD44-233ENST00000531141 GNGT1P63211 74 aa0.83□□□□□ -2.28
CD44-233ENST00000531141 RBM3P98179 157 aaKnown RBP0.83□□□□□ -2.28
CD44-233ENST00000531141 FXYD3Q14802 87 aa0.83□□□□□ -2.28
CD44-233ENST00000531141 PMCHL1Q16048 86 aa0.83□□□□□ -2.28
CD44-233ENST00000531141 KRTAP19-6Q3LI70 58 aa0.83□□□□□ -2.28
CD44-233ENST00000531141 S100A7L2Q5SY68 101 aa0.83□□□□□ -2.28
CD44-233ENST00000531141 LIMD2Q9BT23 127 aa0.83□□□□□ -2.28
CD44-233ENST00000531141 ST20Q9HBF5 79 aa0.83□□□□□ -2.28
CD44-233ENST00000531141 A0A087WWC5 75 aa0.82□□□□□ -2.28
CD44-233ENST00000531141 TRBV6-7A0A0A0MS04 114 aa0.82□□□□□ -2.28
CD44-233ENST00000531141 TRBV7-7A0A0K0K1E9 115 aa0.82□□□□□ -2.28
CD44-233ENST00000531141 RBAKDNA6NC62 111 aa0.82□□□□□ -2.28
CD44-233ENST00000531141 FAM223BA6NKX1 122 aa0.82□□□□□ -2.28
CD44-233ENST00000531141 HCG22E2RYF7 251 aa0.82□□□□□ -2.28
CD44-233ENST00000531141 H3BNG1 76 aa0.82□□□□□ -2.28
CD44-233ENST00000531141 BCE1O60756 84 aa0.82□□□□□ -2.28
CD44-233ENST00000531141 ELOF1P60002 83 aaKnown RBP0.82□□□□□ -2.28
CD44-233ENST00000531141 SSBP1Q04837 148 aaKnown RBP0.82□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms