RNA–Protein interactions for RNA: ENST00000529986.5

CTNND1-223, Transcript of catenin delta 1, human

TSL 1 (best) BASIC

Gene CTNND1, Length 5,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTNND1-223	ENST00000529986	AFDN-AS1	Q9Y6Z5	254 aa	Predicted RBP	4.71	□□□□□ -1.65
CTNND1-223	ENST00000529986	HELZ2	Q9BYK8	2649 aa	Known RBP	4.71	□□□□□ -1.66
CTNND1-223	ENST00000529986	ATR	Q13535	2644 aa		4.7	□□□□□ -1.66
CTNND1-223	ENST00000529986	CAMK2N1	Q7Z7J9	78 aa		4.7	□□□□□ -1.66
CTNND1-223	ENST00000529986	TRANK1	O15050	2925 aa		4.69	□□□□□ -1.66
CTNND1-223	ENST00000529986		Q5W150	140 aa		4.69	□□□□□ -1.66
CTNND1-223	ENST00000529986	CDH23	Q9H251	3354 aa		4.69	□□□□□ -1.66
CTNND1-223	ENST00000529986	LINC00472	Q9H8W2	130 aa		4.67	□□□□□ -1.66
CTNND1-223	ENST00000529986	AKAP13	Q12802	2813 aa		4.66	□□□□□ -1.66
CTNND1-223	ENST00000529986	LAMA2	P24043	3122 aa	Known RBP	4.66	□□□□□ -1.66
CTNND1-223	ENST00000529986		A0A087X002	238 aa		4.66	□□□□□ -1.66
CTNND1-223	ENST00000529986	SPRR1A	P35321	89 aa		4.65	□□□□□ -1.66
CTNND1-223	ENST00000529986	TNP2	Q05952	138 aa		4.65	□□□□□ -1.66
CTNND1-223	ENST00000529986	ZCCHC13	Q8WW36	166 aa	Known RBP	4.65	□□□□□ -1.66
CTNND1-223	ENST00000529986	LINC00483	Q53H64	154 aa		4.65	□□□□□ -1.67
CTNND1-223	ENST00000529986	SZT2	Q5T011	3432 aa		4.65	□□□□□ -1.67
CTNND1-223	ENST00000529986	PRUNE2	Q8WUY3	3088 aa		4.64	□□□□□ -1.67
CTNND1-223	ENST00000529986		Q6ZSA8	131 aa		4.63	□□□□□ -1.67
CTNND1-223	ENST00000529986	KRTAP16-1	A8MUX0	517 aa		4.63	□□□□□ -1.67
CTNND1-223	ENST00000529986	CFAP46	Q8IYW2	2715 aa		4.62	□□□□□ -1.67
CTNND1-223	ENST00000529986	XIRP2	A4UGR9	3374 aa		4.62	□□□□□ -1.67
CTNND1-223	ENST00000529986	DNAH14	Q0VDD8	3507 aa		4.62	□□□□□ -1.67
CTNND1-223	ENST00000529986	UNC80	Q8N2C7	3258 aa		4.62	□□□□□ -1.67
CTNND1-223	ENST00000529986	MAST4	O15021	2626 aa		4.61	□□□□□ -1.67
CTNND1-223	ENST00000529986	ROMO1	P60602	79 aa		4.61	□□□□□ -1.67
CTNND1-223	ENST00000529986	KRTAP26-1	Q6PEX3	210 aa		4.61	□□□□□ -1.67
CTNND1-223	ENST00000529986		S4R3F8	94 aa		4.61	□□□□□ -1.67
CTNND1-223	ENST00000529986	FLNA	P21333	2647 aa	Known RBP	4.61	□□□□□ -1.67
CTNND1-223	ENST00000529986	CHD6	Q8TD26	2715 aa		4.61	□□□□□ -1.67
CTNND1-223	ENST00000529986	FLG2	Q5D862	2391 aa	Predicted RBP	4.61	□□□□□ -1.67
CTNND1-223	ENST00000529986	FREM2	Q5SZK8	3169 aa		4.6	□□□□□ -1.67
CTNND1-223	ENST00000529986	SPATA8	Q6RVD6	105 aa		4.6	□□□□□ -1.67
CTNND1-223	ENST00000529986	USP34	Q70CQ2	3546 aa		4.59	□□□□□ -1.67
CTNND1-223	ENST00000529986	RPL37	P61927	97 aa	Known RBP	4.59	□□□□□ -1.68
CTNND1-223	ENST00000529986	ITPR3	Q14573	2671 aa		4.58	□□□□□ -1.68
CTNND1-223	ENST00000529986	CENPE	Q02224	2701 aa		4.58	□□□□□ -1.68
CTNND1-223	ENST00000529986	SPRR1B	P22528	89 aa		4.57	□□□□□ -1.68
CTNND1-223	ENST00000529986		A8MU10	97 aa		4.57	□□□□□ -1.68
CTNND1-223	ENST00000529986	SETX	Q7Z333	2677 aa	Known RBP	4.57	□□□□□ -1.68
CTNND1-223	ENST00000529986	H1FX-AS1	Q4G0G2	97 aa		4.57	□□□□□ -1.68
CTNND1-223	ENST00000529986	ADM2	Q7Z4H4	148 aa		4.57	□□□□□ -1.68
CTNND1-223	ENST00000529986	BAHCC1	Q9P281	2608 aa		4.56	□□□□□ -1.68
CTNND1-223	ENST00000529986		A6NN06	94 aa		4.56	□□□□□ -1.68
CTNND1-223	ENST00000529986	MYO15A	Q9UKN7	3530 aa		4.55	□□□□□ -1.68
CTNND1-223	ENST00000529986	EYS	Q5T1H1	3165 aa		4.55	□□□□□ -1.68
CTNND1-223	ENST00000529986		R4GN34	69 aa		4.55	□□□□□ -1.68
CTNND1-223	ENST00000529986	PLAC8	Q9NZF1	115 aa		4.55	□□□□□ -1.68
CTNND1-223	ENST00000529986	TEP1	Q99973	2627 aa	Known RBP	4.55	□□□□□ -1.68
CTNND1-223	ENST00000529986	NBEAL1	Q6ZS30	2694 aa		4.54	□□□□□ -1.68
CTNND1-223	ENST00000529986	ZNF292	O60281	2723 aa		4.54	□□□□□ -1.68
CTNND1-223	ENST00000529986	SPTBN5	Q9NRC6	3674 aa	Known RBP	4.54	□□□□□ -1.68
CTNND1-223	ENST00000529986	KRTAP29-1	A8MX34	341 aa	Predicted RBP	4.54	□□□□□ -1.68
CTNND1-223	ENST00000529986		M0R2T5	61 aa		4.54	□□□□□ -1.68
CTNND1-223	ENST00000529986	KRTAP1-5	Q9BYS1	174 aa		4.53	□□□□□ -1.68
CTNND1-223	ENST00000529986	DMBT1	Q9UGM3	2413 aa	Predicted RBP	4.53	□□□□□ -1.68
CTNND1-223	ENST00000529986		Q6ZR54	194 aa		4.53	□□□□□ -1.68
CTNND1-223	ENST00000529986	LCE6A	A0A183	80 aa		4.52	□□□□□ -1.69
CTNND1-223	ENST00000529986	NOTCH2NL	Q7Z3S9	236 aa		4.51	□□□□□ -1.69
CTNND1-223	ENST00000529986	MGA	Q8IWI9	3026 aa		4.51	□□□□□ -1.69
CTNND1-223	ENST00000529986	GCN1	Q92616	2671 aa	Known RBP	4.51	□□□□□ -1.69
CTNND1-223	ENST00000529986	UNC79	Q9P2D8	2635 aa		4.51	□□□□□ -1.69
CTNND1-223	ENST00000529986	SEC61B	P60468	96 aa	Known RBP	4.5	□□□□□ -1.69
CTNND1-223	ENST00000529986	WDFY4	Q6ZS81	3184 aa		4.49	□□□□□ -1.69
CTNND1-223	ENST00000529986		M0QZ58	72 aa		4.49	□□□□□ -1.69
CTNND1-223	ENST00000529986	NOTCH1	P46531	2555 aa		4.49	□□□□□ -1.69
CTNND1-223	ENST00000529986	KRTAP4-16	G5E9R7	235 aa	Predicted RBP	4.49	□□□□□ -1.69
CTNND1-223	ENST00000529986	KRTAP25-1	Q3LHN0	102 aa		4.49	□□□□□ -1.69
CTNND1-223	ENST00000529986	STAB1	Q9NY15	2570 aa		4.48	□□□□□ -1.69
CTNND1-223	ENST00000529986	DSP	P15924	2871 aa	Known RBP	4.48	□□□□□ -1.69
CTNND1-223	ENST00000529986	NBEAL2	Q6ZNJ1	2754 aa		4.48	□□□□□ -1.69
CTNND1-223	ENST00000529986	TRIO	O75962	3097 aa		4.48	□□□□□ -1.69
CTNND1-223	ENST00000529986	VCAN	P13611	3396 aa		4.48	□□□□□ -1.69
CTNND1-223	ENST00000529986	PANO1	I0J062	215 aa		4.47	□□□□□ -1.69
CTNND1-223	ENST00000529986	NDUFAF8	A1L188	74 aa		4.47	□□□□□ -1.69
CTNND1-223	ENST00000529986	SPEG	Q15772	3267 aa		4.46	□□□□□ -1.7
CTNND1-223	ENST00000529986	TEX15	Q9BXT5	2789 aa		4.44	□□□□□ -1.7
CTNND1-223	ENST00000529986	MAP1A	P78559	2803 aa	Predicted RBP	4.44	□□□□□ -1.7
CTNND1-223	ENST00000529986	IGSF10	Q6WRI0	2623 aa		4.43	□□□□□ -1.7
CTNND1-223	ENST00000529986	STAB2	Q8WWQ8	2551 aa		4.43	□□□□□ -1.7
CTNND1-223	ENST00000529986	KRTAP21-3	Q3LHN1	58 aa		4.43	□□□□□ -1.7
CTNND1-223	ENST00000529986		Q5VSD8	79 aa		4.42	□□□□□ -1.7
CTNND1-223	ENST00000529986	FRY	Q5TBA9	3013 aa		4.42	□□□□□ -1.7
CTNND1-223	ENST00000529986	KRTAP10-1	P60331	282 aa		4.41	□□□□□ -1.7
CTNND1-223	ENST00000529986	KRTAP10-2	P60368	255 aa		4.41	□□□□□ -1.7
CTNND1-223	ENST00000529986	KRTAP11-1	Q8IUC1	163 aa		4.41	□□□□□ -1.7
CTNND1-223	ENST00000529986	COL6A3	P12111	3177 aa		4.4	□□□□□ -1.7
CTNND1-223	ENST00000529986	COL6A5	A8TX70	2615 aa		4.4	□□□□□ -1.71
CTNND1-223	ENST00000529986	VPS13A	Q96RL7	3174 aa		4.4	□□□□□ -1.71
CTNND1-223	ENST00000529986	CELSR3	Q9NYQ7	3312 aa		4.39	□□□□□ -1.71
CTNND1-223	ENST00000529986	PLAC4	Q8WY50	150 aa		4.37	□□□□□ -1.71
CTNND1-223	ENST00000529986	KALRN	O60229	2985 aa		4.36	□□□□□ -1.71
CTNND1-223	ENST00000529986	KRTAP7-1	Q8IUC3	87 aa		4.35	□□□□□ -1.71
CTNND1-223	ENST00000529986	TNRC18	O15417	2968 aa	Predicted RBP	4.35	□□□□□ -1.71
CTNND1-223	ENST00000529986	LAMA1	P25391	3075 aa		4.34	□□□□□ -1.71
CTNND1-223	ENST00000529986	C20orf166-AS1	Q96NR2	134 aa		4.34	□□□□□ -1.71
CTNND1-223	ENST00000529986		A8MUU9	505 aa		4.33	□□□□□ -1.72
CTNND1-223	ENST00000529986	ASH1L	Q9NR48	2969 aa	Known RBP	4.32	□□□□□ -1.72
CTNND1-223	ENST00000529986	NBEA	Q8NFP9	2946 aa		4.31	□□□□□ -1.72
CTNND1-223	ENST00000529986	REV3L	O60673	3130 aa		4.31	□□□□□ -1.72
CTNND1-223	ENST00000529986	NSD1	Q96L73	2696 aa	Predicted RBP	4.3	□□□□□ -1.72

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