RNA–Protein interactions for RNA: ENST00000529542.1

HIF3A-213, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 5

Gene HIF3A, Length 1,031 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-213ENST00000529542 A6NDN8 102 aa7.63□□□□□ -1.19
HIF3A-213ENST00000529542 NHP2Q9NX24 153 aaKnown RBP7.63□□□□□ -1.19
HIF3A-213ENST00000529542 TMA7Q9Y2S6 64 aaKnown RBP7.62□□□□□ -1.19
HIF3A-213ENST00000529542 S100A2P29034 98 aa7.61□□□□□ -1.19
HIF3A-213ENST00000529542 TRAV13-2A0A0B4J235 113 aa7.59□□□□□ -1.19
HIF3A-213ENST00000529542 F8WEM9 126 aa7.56□□□□□ -1.2
HIF3A-213ENST00000529542 S100A6P06703 90 aa7.56□□□□□ -1.2
HIF3A-213ENST00000529542 COX8AP10176 69 aa7.55□□□□□ -1.2
HIF3A-213ENST00000529542 LINC00575Q6W349 94 aa7.55□□□□□ -1.2
HIF3A-213ENST00000529542 HSBP1L1C9JCN9 74 aa7.54□□□□□ -1.2
HIF3A-213ENST00000529542 SCGB1D1O95968 90 aa7.54□□□□□ -1.2
HIF3A-213ENST00000529542 C12orf57Q99622 126 aa7.54□□□□□ -1.2
HIF3A-213ENST00000529542 VAMP3Q15836 100 aa7.53□□□□□ -1.2
HIF3A-213ENST00000529542 Q6JHZ5 121 aa7.53□□□□□ -1.2
HIF3A-213ENST00000529542 DLEU1O43261 78 aa7.52□□□□□ -1.21
HIF3A-213ENST00000529542 ATP11AUNQ6ZP68 121 aa7.51□□□□□ -1.21
HIF3A-213ENST00000529542 C2orf91Q6ZV80 131 aa7.51□□□□□ -1.21
HIF3A-213ENST00000529542 Q6ZQY7 126 aa7.5□□□□□ -1.21
HIF3A-213ENST00000529542 C14orf144Q96I85 54 aa7.5□□□□□ -1.21
HIF3A-213ENST00000529542 Q75L30 129 aa7.49□□□□□ -1.21
HIF3A-213ENST00000529542 CLEC2BQ92478 149 aa7.49□□□□□ -1.21
HIF3A-213ENST00000529542 TRBV7-7A0A0K0K1E9 115 aa7.48□□□□□ -1.21
HIF3A-213ENST00000529542 CFC1P0CG37 223 aa7.48□□□□□ -1.21
HIF3A-213ENST00000529542 HIST1H4GQ99525 98 aa7.48□□□□□ -1.21
HIF3A-213ENST00000529542 FLGP20930 4061 aaPredicted RBP7.47□□□□□ -1.21
HIF3A-213ENST00000529542 hADV29S1A0JD25 119 aa7.47□□□□□ -1.21
HIF3A-213ENST00000529542 PAM16Q9Y3D7 125 aa7.46□□□□□ -1.22
HIF3A-213ENST00000529542 SPATA45Q537H7 98 aa7.45□□□□□ -1.22
HIF3A-213ENST00000529542 OCIAD2Q56VL3 154 aa7.45□□□□□ -1.22
HIF3A-213ENST00000529542 IGFL1Q6UW32 110 aa7.45□□□□□ -1.22
HIF3A-213ENST00000529542 PPDPFLQ8WWR9 84 aa7.45□□□□□ -1.22
HIF3A-213ENST00000529542 FAM218AQ96MZ4 157 aa7.45□□□□□ -1.22
HIF3A-213ENST00000529542 HIGD1BQ9P298 99 aa7.45□□□□□ -1.22
HIF3A-213ENST00000529542 LOC105371267A0A1B0GV96 52 aa7.44□□□□□ -1.22
HIF3A-213ENST00000529542 Q6Q795 121 aa7.44□□□□□ -1.22
HIF3A-213ENST00000529542 OBSCN-AS1Q96MR7 158 aa7.44□□□□□ -1.22
HIF3A-213ENST00000529542 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP7.43□□□□□ -1.22
HIF3A-213ENST00000529542 A0A0B4J2C4 111 aa7.41□□□□□ -1.22
HIF3A-213ENST00000529542 LST1O00453 97 aa7.41□□□□□ -1.22
HIF3A-213ENST00000529542 BVES-AS1Q5T3Y7 98 aa7.4□□□□□ -1.22
HIF3A-213ENST00000529542 SNHG12Q9BXW3 62 aa7.4□□□□□ -1.22
HIF3A-213ENST00000529542 H3BUT2 72 aa7.39□□□□□ -1.23
HIF3A-213ENST00000529542 FXYD2P54710 66 aa7.39□□□□□ -1.23
HIF3A-213ENST00000529542 PYY3Q5JQD4 70 aa7.39□□□□□ -1.23
HIF3A-213ENST00000529542 VAMP8Q9BV40 100 aa7.39□□□□□ -1.23
HIF3A-213ENST00000529542 SS18L2Q9UHA2 77 aa7.39□□□□□ -1.23
HIF3A-213ENST00000529542 CEND1Q8N111 149 aa7.38□□□□□ -1.23
HIF3A-213ENST00000529542 Q96NJ1 140 aa7.38□□□□□ -1.23
HIF3A-213ENST00000529542 TRBV20-1A0A075B6N2 111 aa7.36□□□□□ -1.23
HIF3A-213ENST00000529542 C20orf166-AS1Q96NR2 134 aa7.36□□□□□ -1.23
HIF3A-213ENST00000529542 RAB37Q96AX2 223 aa7.35□□□□□ -1.23
HIF3A-213ENST00000529542 SNCGO76070 127 aa7.34□□□□□ -1.23
HIF3A-213ENST00000529542 A8MUU9 505 aa7.33□□□□□ -1.24
HIF3A-213ENST00000529542 H0YGX0 51 aa7.32□□□□□ -1.24
HIF3A-213ENST00000529542 TEN1Q86WV5 123 aa7.32□□□□□ -1.24
HIF3A-213ENST00000529542 KRTAP9-8Q9BYQ0 159 aa7.32□□□□□ -1.24
HIF3A-213ENST00000529542 PRO1854Q9UHT4 67 aa7.32□□□□□ -1.24
HIF3A-213ENST00000529542 KRTAP9-7A8MTY7 169 aa7.31□□□□□ -1.24
HIF3A-213ENST00000529542 TRIAP1O43715 76 aa7.31□□□□□ -1.24
HIF3A-213ENST00000529542 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.3□□□□□ -1.24
HIF3A-213ENST00000529542 NDUFV3P56181 108 aaKnown RBP7.3□□□□□ -1.24
HIF3A-213ENST00000529542 K7ERJ3 54 aa7.29□□□□□ -1.24
HIF3A-213ENST00000529542 GHRHP01286 108 aa7.28□□□□□ -1.24
HIF3A-213ENST00000529542 A0A1B0GX51 115 aa7.27□□□□□ -1.25
HIF3A-213ENST00000529542 SMIM6P0DI80 62 aa7.27□□□□□ -1.25
HIF3A-213ENST00000529542 A0A1W2PNM2 257 aa7.26□□□□□ -1.25
HIF3A-213ENST00000529542 HSD52Q0P140 79 aa7.26□□□□□ -1.25
HIF3A-213ENST00000529542 A0A087WSZ3 146 aa7.24□□□□□ -1.25
HIF3A-213ENST00000529542 TMEM238LA0A1B0GVL6 79 aa7.24□□□□□ -1.25
HIF3A-213ENST00000529542 A6NJY4 79 aa7.24□□□□□ -1.25
HIF3A-213ENST00000529542 H3BMG7 143 aa7.23□□□□□ -1.25
HIF3A-213ENST00000529542 FABP2P12104 132 aa7.21□□□□□ -1.26
HIF3A-213ENST00000529542 FAM236DA0A1B0GTK5 79 aa7.2□□□□□ -1.26
HIF3A-213ENST00000529542 FAM236CP0DP71 79 aa7.2□□□□□ -1.26
HIF3A-213ENST00000529542 LINC00313P59037 77 aa7.2□□□□□ -1.26
HIF3A-213ENST00000529542 RBM12B-AS1Q9P1G2 102 aa7.2□□□□□ -1.26
HIF3A-213ENST00000529542 DSCR10P59022 87 aa7.19□□□□□ -1.26
HIF3A-213ENST00000529542 UQCR10Q9UDW1 63 aa7.19□□□□□ -1.26
HIF3A-213ENST00000529542 SIGMAR1Q99720 223 aa7.18□□□□□ -1.26
HIF3A-213ENST00000529542 A0A1B0GV72 72 aa7.17□□□□□ -1.26
HIF3A-213ENST00000529542 MT2AP02795 61 aa7.17□□□□□ -1.26
HIF3A-213ENST00000529542 USH2AO75445 5202 aa7.17□□□□□ -1.26
HIF3A-213ENST00000529542 ORMDL1Q9P0S3 153 aa7.16□□□□□ -1.26
HIF3A-213ENST00000529542 KRTAP16-1A8MUX0 517 aa7.15□□□□□ -1.26
HIF3A-213ENST00000529542 MPLKIPQ8TAP9 179 aa7.15□□□□□ -1.26
HIF3A-213ENST00000529542 TRBV7-4A0A0J9YYF1 115 aa7.14□□□□□ -1.27
HIF3A-213ENST00000529542 H3BQ85 93 aa7.14□□□□□ -1.27
HIF3A-213ENST00000529542 IGKV4-1P06312 121 aa7.14□□□□□ -1.27
HIF3A-213ENST00000529542 PSMB2P49721 201 aa7.14□□□□□ -1.27
HIF3A-213ENST00000529542 NOTCH2NLQ7Z3S9 236 aa7.14□□□□□ -1.27
HIF3A-213ENST00000529542 SSPOA2VEC9 5147 aa7.14□□□□□ -1.27
HIF3A-213ENST00000529542 LINC00472Q9H8W2 130 aa7.13□□□□□ -1.27
HIF3A-213ENST00000529542 TSTD3H0UI37 97 aa7.12□□□□□ -1.27
HIF3A-213ENST00000529542 ANKRD29Q8N6D5 301 aa7.12□□□□□ -1.27
HIF3A-213ENST00000529542 PCP4L1A6NKN8 68 aa7.11□□□□□ -1.27
HIF3A-213ENST00000529542 TMEM256-PLSCR3K7ERE1 68 aa7.11□□□□□ -1.27
HIF3A-213ENST00000529542 DNAL4O96015 105 aa7.11□□□□□ -1.27
HIF3A-213ENST00000529542 TRACP01848 142 aa7.11□□□□□ -1.27
HIF3A-213ENST00000529542 HRES1P13985 223 aa7.11□□□□□ -1.27
HIF3A-213ENST00000529542 KRTAP10-10P60014 251 aa7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms