RNA–Protein interactions for RNA: ENST00000528336.1

PCF11-202, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 5

Gene PCF11, Length 1,041 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-202ENST00000528336 TRAV12-3A0A0B4J271 114 aa2.85□□□□□ -1.95
PCF11-202ENST00000528336 A8MTW9 85 aa2.85□□□□□ -1.95
PCF11-202ENST00000528336 SYS1-DBNDD2H3BUS1 97 aa2.85□□□□□ -1.95
PCF11-202ENST00000528336 PRB4P10163 310 aaPredicted RBP2.85□□□□□ -1.95
PCF11-202ENST00000528336 GCHFRP30047 84 aa2.85□□□□□ -1.95
PCF11-202ENST00000528336 DEFB1P60022 68 aa2.85□□□□□ -1.95
PCF11-202ENST00000528336 ADIRFQ15847 76 aa2.85□□□□□ -1.95
PCF11-202ENST00000528336 GDF5OSQ5U4N7 250 aa2.85□□□□□ -1.95
PCF11-202ENST00000528336 SPACA4Q8TDM5 124 aa2.85□□□□□ -1.95
PCF11-202ENST00000528336 IFI27L1Q96BM0 104 aa2.85□□□□□ -1.95
PCF11-202ENST00000528336 LINC01600Q96MT4 127 aa2.85□□□□□ -1.95
PCF11-202ENST00000528336 DNAH9Q9NYC9 4486 aa2.85□□□□□ -1.95
PCF11-202ENST00000528336 TGP01266 2768 aa2.85□□□□□ -1.95
PCF11-202ENST00000528336 TENM3Q9P273 2699 aa2.84□□□□□ -1.95
PCF11-202ENST00000528336 M0R3E3 92 aa2.84□□□□□ -1.95
PCF11-202ENST00000528336 DMAC1Q96GE9 116 aa2.84□□□□□ -1.95
PCF11-202ENST00000528336 ORMDL1Q9P0S3 153 aa2.84□□□□□ -1.95
PCF11-202ENST00000528336 SPCS1Q9Y6A9 102 aa2.84□□□□□ -1.95
PCF11-202ENST00000528336 ARL2-SNX15V9GYD0 113 aa2.84□□□□□ -1.95
PCF11-202ENST00000528336 COL7A1Q02388 2944 aa2.83□□□□□ -1.96
PCF11-202ENST00000528336 IGKV2-40A0A087WW87 121 aaPredicted RBP2.83□□□□□ -1.96
PCF11-202ENST00000528336 NUPR2A6NF83 97 aa2.83□□□□□ -1.96
PCF11-202ENST00000528336 H7BZZ5 65 aa2.83□□□□□ -1.96
PCF11-202ENST00000528336 IGKV2D-40P01614 121 aaPredicted RBP2.83□□□□□ -1.96
PCF11-202ENST00000528336 IGLC3P0DOY3 106 aa2.83□□□□□ -1.96
PCF11-202ENST00000528336 UBE2D1P51668 147 aa2.83□□□□□ -1.96
PCF11-202ENST00000528336 UBE2D3P61077 147 aa2.83□□□□□ -1.96
PCF11-202ENST00000528336 UBE2D2P62837 147 aa2.83□□□□□ -1.96
PCF11-202ENST00000528336 DEFB135Q30KP9 77 aa2.83□□□□□ -1.96
PCF11-202ENST00000528336 HUWE1Q7Z6Z7 4374 aaKnown RBP2.83□□□□□ -1.96
PCF11-202ENST00000528336 A0A1W2PPM0 123 aa2.82□□□□□ -1.96
PCF11-202ENST00000528336 IGHV3-30P01768 117 aa2.82□□□□□ -1.96
PCF11-202ENST00000528336 IGHV3-30-5P0DP03 117 aa2.82□□□□□ -1.96
PCF11-202ENST00000528336 SPINK13Q1W4C9 94 aa2.82□□□□□ -1.96
PCF11-202ENST00000528336 ETDBQ3ZM63 59 aa2.82□□□□□ -1.96
PCF11-202ENST00000528336 MANBALQ9NQG1 85 aa2.82□□□□□ -1.96
PCF11-202ENST00000528336 GNG13Q9P2W3 67 aa2.82□□□□□ -1.96
PCF11-202ENST00000528336 LENEPQ9Y5L5 61 aa2.82□□□□□ -1.96
PCF11-202ENST00000528336 TRBV7-3A0A075B6L6 115 aa2.81□□□□□ -1.96
PCF11-202ENST00000528336 TRAV23DV6A0A075B6W5 121 aa2.81□□□□□ -1.96
PCF11-202ENST00000528336 BCE1O60756 84 aa2.81□□□□□ -1.96
PCF11-202ENST00000528336 BVES-AS1Q5T3Y7 98 aa2.81□□□□□ -1.96
PCF11-202ENST00000528336 TXNDC17Q9BRA2 123 aa2.81□□□□□ -1.96
PCF11-202ENST00000528336 NXT2Q9NPJ8 142 aaKnown RBP2.81□□□□□ -1.96
PCF11-202ENST00000528336 TRBV6-8A0A0A6YYG3 113 aa2.8□□□□□ -1.96
PCF11-202ENST00000528336 TRBV6-1A0A0K0K1D8 114 aa2.8□□□□□ -1.96
PCF11-202ENST00000528336 KLKP1Q107X0 134 aa2.8□□□□□ -1.96
PCF11-202ENST00000528336 Q5VV11 94 aa2.8□□□□□ -1.96
PCF11-202ENST00000528336 Q86TA4 180 aa2.8□□□□□ -1.96
PCF11-202ENST00000528336 TVP23CQ96ET8 276 aa2.8□□□□□ -1.96
PCF11-202ENST00000528336 HIGD1BQ9P298 99 aa2.8□□□□□ -1.96
PCF11-202ENST00000528336 TRAV22A0A0B4J277 110 aa2.79□□□□□ -1.96
PCF11-202ENST00000528336 TRAV21A0A0B4J279 112 aa2.79□□□□□ -1.96
PCF11-202ENST00000528336 WFDC2Q14508 124 aa2.79□□□□□ -1.96
PCF11-202ENST00000528336 TMEM263Q8WUH6 116 aaKnown RBP2.79□□□□□ -1.96
PCF11-202ENST00000528336 DEFB4AO15263 64 aa2.78□□□□□ -1.96
PCF11-202ENST00000528336 IGLV6-57P01721 117 aa2.78□□□□□ -1.96
PCF11-202ENST00000528336 SPART-AS1P0CW21 52 aa2.78□□□□□ -1.96
PCF11-202ENST00000528336 HTN1P15515 57 aa2.78□□□□□ -1.96
PCF11-202ENST00000528336 BAGE2Q86Y30 109 aa2.78□□□□□ -1.96
PCF11-202ENST00000528336 PRO1854Q9UHT4 67 aa2.78□□□□□ -1.96
PCF11-202ENST00000528336 TEX49A0A1B0GTD5 131 aa2.77□□□□□ -1.97
PCF11-202ENST00000528336 TRBV6-4A0A1B0GX49 114 aa2.77□□□□□ -1.97
PCF11-202ENST00000528336 A0A1W2PNN7 141 aa2.77□□□□□ -1.97
PCF11-202ENST00000528336 RNASE3P12724 160 aaKnown RBP2.77□□□□□ -1.97
PCF11-202ENST00000528336 CRIP1P50238 77 aa2.77□□□□□ -1.97
PCF11-202ENST00000528336 LIMD2Q9BT23 127 aa2.77□□□□□ -1.97
PCF11-202ENST00000528336 TIMM8BQ9Y5J9 83 aaPredicted RBP2.77□□□□□ -1.97
PCF11-202ENST00000528336 PDE6GP18545 87 aa2.76□□□□□ -1.97
PCF11-202ENST00000528336 NOP10Q9NPE3 64 aaKnown RBP2.76□□□□□ -1.97
PCF11-202ENST00000528336 DNAH7Q8WXX0 4024 aa2.75□□□□□ -1.97
PCF11-202ENST00000528336 TRGV2A0A075B6R0 118 aa2.75□□□□□ -1.97
PCF11-202ENST00000528336 DEFB131BA0A096LNP1 70 aa2.75□□□□□ -1.97
PCF11-202ENST00000528336 TRGV1A0A0A0MS02 117 aa2.75□□□□□ -1.97
PCF11-202ENST00000528336 SPINK4O60575 86 aa2.75□□□□□ -1.97
PCF11-202ENST00000528336 DEFB130BP0DP73 79 aa2.75□□□□□ -1.97
PCF11-202ENST00000528336 DEFB130AP0DP74 79 aa2.75□□□□□ -1.97
PCF11-202ENST00000528336 CDC42SE2Q9NRR3 84 aa2.75□□□□□ -1.97
PCF11-202ENST00000528336 IGKV2-24A0A0C4DH68 120 aa2.74□□□□□ -1.97
PCF11-202ENST00000528336 SDHAF1A6NFY7 115 aa2.74□□□□□ -1.97
PCF11-202ENST00000528336 F2Z2F3 143 aa2.74□□□□□ -1.97
PCF11-202ENST00000528336 H3BVH4 76 aa2.74□□□□□ -1.97
PCF11-202ENST00000528336 COX6CP09669 75 aa2.74□□□□□ -1.97
PCF11-202ENST00000528336 SFTA3P0C7M3 94 aa2.74□□□□□ -1.97
PCF11-202ENST00000528336 ARMS2P0C7Q2 107 aa2.74□□□□□ -1.97
PCF11-202ENST00000528336 ZNF56Q15929 161 aa2.74□□□□□ -1.97
PCF11-202ENST00000528336 C18orf32Q8TCD1 76 aa2.74□□□□□ -1.97
PCF11-202ENST00000528336 TENM2Q9NT68 2774 aa2.74□□□□□ -1.97
PCF11-202ENST00000528336 TRBV25-1A0A075B6N4 114 aa2.73□□□□□ -1.97
PCF11-202ENST00000528336 LOC101927531A0A1B0GV80 90 aa2.73□□□□□ -1.97
PCF11-202ENST00000528336 H3BNG1 76 aa2.73□□□□□ -1.97
PCF11-202ENST00000528336 HTN3P15516 51 aa2.73□□□□□ -1.97
PCF11-202ENST00000528336 ELOF1P60002 83 aaKnown RBP2.73□□□□□ -1.97
PCF11-202ENST00000528336 DYNC2H1Q8NCM8 4307 aaKnown RBP2.73□□□□□ -1.97
PCF11-202ENST00000528336 STARD9Q9P2P6 4700 aa2.73□□□□□ -1.97
PCF11-202ENST00000528336 HIGD1CA8MV81 97 aa2.72□□□□□ -1.97
PCF11-202ENST00000528336 JMJD7-PLA2G4BH0Y9G9 81 aa2.72□□□□□ -1.97
PCF11-202ENST00000528336 CHKB-CPT1BH3BT56 60 aa2.72□□□□□ -1.97
PCF11-202ENST00000528336 H3BUT2 72 aa2.72□□□□□ -1.97
PCF11-202ENST00000528336 ACYP1P07311 99 aa2.72□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 403.8 ms